Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1C926T5 Lonicera japonica HOM05D003984 ORTHO05D004740 1.2e-186 656.4 333 100.0
Lj1A928T58 Lonicera japonica HOM05D003984 ORTHO05D004740 6.1e-114 414.8 241 90.5
Lj8A94T49 Lonicera japonica HOM05D003984 ORTHO05D004740 5.7e-104 381.7 268 76.1
CANSAT56G1305 Cannabis sativa HOM05D003984 ORTHO05D004740 8.2e-103 377.9 268 75.0
MD01G1114200 Malus domestica HOM05D003984 ORTHO05D004740 1.1e-102 377.5 268 75.0
Prupe.2G220800 Prunus persica HOM05D003984 ORTHO05D004740 1.1e-102 377.5 263 74.9
MD07G1182100 Malus domestica HOM05D003984 ORTHO05D004740 3.1e-102 375.9 263 74.9
QL08p057270 Quercus lobata HOM05D003984 ORTHO05D004740 2.0e-101 373.2 267 74.2
RcHm_v2.0_Chr1g0364411 Rosa chinensis HOM05D003984 ORTHO05D004740 2.0e-101 373.2 263 73.4
ClCG09G020350 Citrullus lanatus HOM05D003984 ORTHO05D004740 1.0e-100 370.9 268 71.6
Dinv11820 Davidia involucrata HOM05D003984 ORTHO05D004740 1.3e-100 370.5 268 73.9
CiPaw.02G177500 Carya illinoinensis HOM05D003984 ORTHO05D004740 1.7e-100 370.2 285 71.2
CsaV3_5G026080 Cucumis sativus L. HOM05D003984 ORTHO05D004740 1.7e-100 370.2 268 72.0
Nitab4.5_0000830g0100 Nicotiana tabacum HOM05D003984 ORTHO05D004740 2.9e-100 369.4 263 73.0
Sed0003028 Sechium edule HOM05D003984 ORTHO05D004740 2.9e-100 369.4 268 72.8
Manes.10G040500 Manihot esculenta HOM05D003984 ORTHO05D004740 3.8e-100 369.0 247 78.9
Cc09_g02350 Coffea canephora HOM05D003984 ORTHO05D004740 6.5e-100 368.2 242 78.1
CiPaw.01G278000 Carya illinoinensis HOM05D003984 ORTHO05D004740 5.5e-99 365.2 268 72.0
Nitab4.5_0001248g0030 Nicotiana tabacum HOM05D003984 ORTHO05D004740 5.5e-99 365.2 263 72.2
Manes.07G104700 Manihot esculenta HOM05D003984 ORTHO05D004740 7.2e-99 364.8 263 74.5
SGA_v2.0_scaffold62G21447 Striga asiatica HOM05D003984 ORTHO05D004740 1.2e-98 364.0 260 72.7
COL.COLO4_23777 Corchorus olitorius HOM05D003984 ORTHO05D004740 2.7e-98 362.8 268 72.4
Cfa001574 Carpinus fangiana HOM05D003984 ORTHO05D004740 4.7e-98 362.1 268 72.4
Haze_16954 Corylus avellana HOM05D003984 ORTHO05D004740 4.7e-98 362.1 240 78.3
Dinv31376 Davidia involucrata HOM05D003984 ORTHO05D004740 4.7e-98 362.1 268 72.0
MSTRG.27450 Avicennia marina HOM05D003984 ORTHO05D004740 1.4e-97 360.5 247 76.1
Atru.chr12.610 Acer truncatum HOM05D003984 ORTHO05D004740 1.8e-97 360.1 268 72.0
Thecc.10G065000 Theobroma cacao HOM05D003984 ORTHO05D004740 1.8e-97 360.1 268 72.4
FAN10G1795 Fragaria x ananassa HOM05D003984 ORTHO05D004740 3.0e-97 359.4 263 72.2
CSS0036351 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 5.2e-97 358.6 268 70.9
TAR633G2252 Trochodendron aralioides HOM05D003984 ORTHO05D004740 5.2e-97 358.6 242 76.4
Actinidia13840 Actinidia chinensis HOM05D003984 ORTHO05D004740 6.7e-97 358.2 263 71.9
Migut.F02015 Erythranthe guttata HOM05D003984 ORTHO05D004740 6.7e-97 358.2 260 71.2
FAN06G2832 Fragaria x ananassa HOM05D003984 ORTHO05D004740 6.7e-97 358.2 263 71.9
CSS0025505 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 8.8e-97 357.8 268 70.9
FAN03G0045 Fragaria x ananassa HOM05D003984 ORTHO05D004740 1.1e-96 357.5 263 71.5
TWI15G0393 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 2.0e-96 356.7 264 71.6
Peaxi162Scf01024g00120 Petunia axillaris HOM05D003984 ORTHO05D004740 2.6e-96 356.3 263 71.9
FvH4_7g20520 Fragaria vesca HOM05D003984 ORTHO05D004740 3.3e-96 355.9 263 71.1
Oeu055063.1 Olea europaea HOM05D003984 ORTHO05D004740 5.7e-96 355.1 242 75.6
CSS0011111 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 9.7e-96 354.4 268 72.0
Potri.008G046000 Populus trichocarpa HOM05D003984 ORTHO05D004740 9.7e-96 354.4 273 70.3
Medtr1g116240 Medicago truncatula HOM05D003984 ORTHO05D004740 1.3e-95 354.0 268 70.9
Solyc04g049710.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 1.3e-95 354.0 263 70.3
GSVIVG01032647001 Vitis vinifera HOM05D003984 ORTHO05D004740 1.3e-95 354.0 268 71.6
EL10Ac2g03538 Beta vulgaris HOM05D003984 ORTHO05D004740 2.2e-95 353.2 267 68.9
Sopen04g019960 Solanum pennellii HOM05D003984 ORTHO05D004740 2.2e-95 353.2 263 70.3
Lj5g0020432 Lotus japonicus HOM05D003984 ORTHO05D004740 4.8e-95 352.1 263 71.1
Duzib114G0791 Durio zibethinus HOM05D003984 ORTHO05D004740 8.2e-95 351.3 268 73.1
Sed0000226 Sechium edule HOM05D003984 ORTHO05D004740 8.2e-95 351.3 263 70.3
TPR.G10390 Trifolium pratense HOM05D003984 ORTHO05D004740 8.2e-95 351.3 269 71.0
AUR62036011 Chenopodium quinoa HOM05D003984 ORTHO05D004740 1.4e-94 350.5 267 69.3
Peaxi162Scf00195g00824 Petunia axillaris HOM05D003984 ORTHO05D004740 2.4e-94 349.7 263 69.6
DCAR_019150 Daucus carota HOM05D003984 ORTHO05D004740 3.1e-94 349.4 247 74.5
Lalb_Chr21g0307521 Lupinus albus HOM05D003984 ORTHO05D004740 4.1e-94 349.0 240 76.7
Rhsim09G0154900 Rhododendron simsii HOM05D003984 ORTHO05D004740 7.0e-94 348.2 251 74.1
Glyma.10G294300 Glycine max HOM05D003984 ORTHO05D004740 2.6e-93 346.3 268 69.8
Duzib128G0096 Durio zibethinus HOM05D003984 ORTHO05D004740 3.5e-93 345.9 269 71.7
Glyma.20G244200 Glycine max HOM05D003984 ORTHO05D004740 3.5e-93 345.9 267 68.9
Lalb_Chr06g0164371 Lupinus albus HOM05D003984 ORTHO05D004740 3.5e-93 345.9 268 70.1
Sabra08G0032300 Salix brachista HOM05D003984 ORTHO05D004740 5.9e-93 345.1 281 68.0
Ciclev10032445m.g Citrus clementina HOM05D003984 ORTHO05D004740 1.7e-92 343.6 269 69.5
Psat6g240040 Pisum sativum HOM05D003984 ORTHO05D004740 1.7e-92 343.6 266 69.5
Gorai.012G092700 Gossypium raimondii HOM05D003984 ORTHO05D004740 3.8e-92 342.4 268 69.0
Potri.010G215500 Populus trichocarpa HOM05D003984 ORTHO05D004740 5.0e-92 342.0 270 70.7
CAN.G186.31 Capsicum annuum HOM05D003984 ORTHO05D004740 6.5e-92 341.7 263 67.7
Nitab4.5_0000691g0240 Nicotiana tabacum HOM05D003984 ORTHO05D004740 8.5e-92 341.3 263 67.3
Gohir.A05G343700 Gossypium hirsutum HOM05D003984 ORTHO05D004740 1.5e-91 340.5 268 69.0
Nn2g10608 Nelumbo nucifera HOM05D003984 ORTHO05D004740 1.5e-91 340.5 263 66.2
Phvul.007G005800 Phaseolus vulgaris HOM05D003984 ORTHO05D004740 1.9e-91 340.1 269 69.5
PGSC0003DMG400032551 Solanum tuberosum HOM05D003984 ORTHO05D004740 2.5e-91 339.7 263 68.1
VMungo0720G0811 Vigna mungo HOM05D003984 ORTHO05D004740 2.5e-91 339.7 267 69.7
Gohir.D10G216200 Gossypium hirsutum HOM05D003984 ORTHO05D004740 2.1e-90 336.7 268 68.7
CSS0002243 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 2.7e-90 336.3 256 71.9
SGA_v2.0_scaffold329G48849 Striga asiatica HOM05D003984 ORTHO05D004740 2.7e-90 336.3 261 67.8
Gorai.011G241800 Gossypium raimondii HOM05D003984 ORTHO05D004740 4.7e-90 335.5 268 68.3
Nitab4.5_0004104g0120 Nicotiana tabacum HOM05D003984 ORTHO05D004740 6.1e-90 335.1 251 69.3
Solyc04g009550.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 6.1e-90 335.1 263 66.9
Ah.10g033080 Amaranthus hybridus HOM05D003984 ORTHO05D004740 1.4e-89 334.0 291 63.6
PGR044G2197 Punica granatum HOM05D003984 ORTHO05D004740 1.4e-89 334.0 264 68.9
TWI63G0288 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 1.4e-89 334.0 258 68.6
AUR62041612 Chenopodium quinoa HOM05D003984 ORTHO05D004740 3.0e-89 332.8 294 62.2
Eucgr.J01137 Eucalyptus grandis HOM05D003984 ORTHO05D004740 3.0e-89 332.8 268 67.2
Hund22456 Selenicereus undatus HOM05D003984 ORTHO05D004740 4.0e-89 332.4 268 68.3
Lalb_Chr02g0144171 Lupinus albus HOM05D003984 ORTHO05D004740 1.2e-88 330.9 266 67.7
Gohir.A10G208060 Gossypium hirsutum HOM05D003984 ORTHO05D004740 2.0e-88 330.1 268 67.9
DCAR_015251 Daucus carota HOM05D003984 ORTHO05D004740 2.6e-88 329.7 251 68.9
TAR623G0696 Trochodendron aralioides HOM05D003984 ORTHO05D004740 3.4e-88 329.3 231 73.2
Oeu057248.1 Olea europaea HOM05D003984 ORTHO05D004740 4.4e-88 328.9 234 71.8
arahy.Tifrunner.gnm1.ann1.V3HSKN Arachis hypogaea HOM05D003984 ORTHO05D004740 7.5e-88 328.2 268 68.3
Migut.F01787 Erythranthe guttata HOM05D003984 ORTHO05D004740 9.7e-88 327.8 262 66.8
THA.LOC104825886 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 1.3e-87 327.4 263 68.1
ECA238G2056 Erigeron canadensis HOM05D003984 ORTHO05D004740 2.8e-87 326.2 267 66.3
Lsat_1_v5_gn_2_115481 Lactuca sativa HOM05D003984 ORTHO05D004740 2.8e-87 326.2 240 70.8
Sabra10G0166500 Salix brachista HOM05D003984 ORTHO05D004740 4.1e-86 322.4 243 72.8
Nn2g12956 Nelumbo nucifera HOM05D003984 ORTHO05D004740 7.0e-86 321.6 263 65.8
HanXRQChr12g0367731 Helianthus annuus HOM05D003984 ORTHO05D004740 9.1e-86 321.2 268 64.2
THA.LOC104824242 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 5.9e-85 318.5 263 67.3
Aqoxy4G03159 Aquilegia oxysepala HOM05D003984 ORTHO05D004740 3.8e-84 315.8 278 63.7
SalBow3G2899 Salvia bowleyana HOM05D003984 ORTHO05D004740 6.5e-84 315.1 226 72.6
ATR0594G132 Amborella trichopoda HOM05D003984 ORTHO05D004740 1.9e-83 313.5 271 63.5
PSO339G0239 Papaver somniferum HOM05D003984 ORTHO05D004740 1.2e-82 310.8 268 62.7
PSO384G2137 Papaver somniferum HOM05D003984 ORTHO05D004740 1.2e-82 310.8 268 62.7
HanXRQChr07g0200921 Helianthus annuus HOM05D003984 ORTHO05D004740 3.6e-82 309.3 261 64.0
THA.LOC104810167 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 4.0e-81 305.8 251 66.5
Carub.0005s2162 Capsella rubella HOM05D003984 ORTHO05D004740 6.8e-81 305.1 264 62.5
PSO339G2647 Papaver somniferum HOM05D003984 ORTHO05D004740 1.5e-80 303.9 263 61.6
AL5G36120 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 2.0e-80 303.5 264 62.5
arahy.Tifrunner.gnm1.ann1.B234YK Arachis hypogaea HOM05D003984 ORTHO05D004740 2.6e-80 303.1 321 57.0
Lsat_1_v5_gn_8_21240 Lactuca sativa HOM05D003984 ORTHO05D004740 4.4e-80 302.4 244 66.0
Sp5g07420 Schrenkiella parvula HOM05D003984 ORTHO05D004740 4.4e-80 302.4 264 62.5
AL5G36110 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 5.7e-80 302.0 264 62.1
BcaC08g44716 Brassica carinata HOM05D003984 ORTHO05D004740 7.5e-80 301.6 264 62.1
C06p22550 Brassica napus HOM05D003984 ORTHO05D004740 7.5e-80 301.6 264 62.1
Carub.0005s2163 Capsella rubella HOM05D003984 ORTHO05D004740 9.8e-80 301.2 264 62.9
Aa31sc33G70 Aethionema arabicum HOM05D003984 ORTHO05D004740 3.7e-79 299.3 264 62.1
Os11g0102600 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 4.8e-79 298.9 238 64.7
Os12g0102200 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 4.8e-79 298.9 238 64.7
AT3G55000 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 8.3e-79 298.1 264 61.7
A07p22390 Brassica napus HOM05D003984 ORTHO05D004740 8.3e-79 298.1 264 62.5
Thhalv10010647m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 3.1e-78 296.2 264 61.7
Zm00001eb094350 Zea mays HOM05D003984 ORTHO05D004740 3.1e-78 296.2 238 64.3
AT3G55005 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 4.1e-78 295.8 265 62.3
BcaB02g07705 Brassica carinata HOM05D003984 ORTHO05D004740 5.4e-78 295.4 264 61.7
BolC6t37445H Brassica oleracea HOM05D003984 ORTHO05D004740 5.4e-78 295.4 264 61.7
Ca_11380_v3 Cicer arietinum L. HOM05D003984 ORTHO05D004740 9.1e-78 294.7 262 63.7
BraA07t29915Z Brassica rapa HOM05D003984 ORTHO05D004740 1.2e-77 294.3 281 59.1
CDE09G0608 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 1.2e-77 294.3 268 60.4
CARHR165000 Cardamine hirsuta HOM05D003984 ORTHO05D004740 1.7e-76 290.4 264 61.0
HPP92_017944 Vanilla planifolia HOM05D003984 ORTHO05D004740 3.8e-76 289.3 244 63.5
HanXRQChr14g0460861 Helianthus annuus HOM05D003984 ORTHO05D004740 8.6e-76 288.1 267 61.4
HPP92_019786 Vanilla planifolia HOM05D003984 ORTHO05D004740 1.1e-75 287.7 243 61.7
Zm00001eb163130 Zea mays HOM05D003984 ORTHO05D004740 5.5e-75 285.4 238 63.0
Sp5g07430 Schrenkiella parvula HOM05D003984 ORTHO05D004740 9.5e-75 284.6 264 61.4
CARHR165010 Cardamine hirsuta HOM05D003984 ORTHO05D004740 6.8e-73 278.5 266 59.0
Gohir.D04G082100 Gossypium hirsutum HOM05D003984 ORTHO05D004740 8.9e-73 278.1 228 66.2
Sc20g0002240 Simmondsia chinensis HOM05D003984 ORTHO05D004740 6.3e-71 271.9 262 58.8
unitig_0.g190 Utricularia gibba HOM05D003984 ORTHO05D004740 6.3e-71 271.9 236 61.9
CDE02G0952 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 2.4e-70 270.0 253 58.1
BraA09t40255Z Brassica rapa HOM05D003984 ORTHO05D004740 3.9e-68 262.7 266 54.1
MELO3C025490.2 Cucumis melo HOM05D003984 ORTHO05D004740 1.5e-67 260.8 215 65.6
A09p48020 Brassica napus HOM05D003984 ORTHO05D004740 1.9e-67 260.4 264 54.5
C08p30240 Brassica napus HOM05D003984 ORTHO05D004740 1.8e-65 253.8 281 52.7
BcaNung04652 Brassica carinata HOM05D003984 ORTHO05D004740 1.2e-64 251.1 265 54.0
MSTRG.9196 Avicennia marina HOM05D003984 ORTHO05D004740 1.5e-64 250.8 177 71.2
Thhalv10010676m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 7.5e-64 248.4 242 58.7
BcaB01g00136 Brassica carinata HOM05D003984 ORTHO05D004740 8.3e-63 245.0 292 51.0
BolC8t50631H Brassica oleracea HOM05D003984 ORTHO05D004740 1.6e-61 240.7 264 51.1
FAN06G1180 Fragaria x ananassa HOM05D003984 ORTHO05D004740 7.8e-61 238.4 171 73.1
Sopen04g004710 Solanum pennellii HOM05D003984 ORTHO05D004740 5.0e-60 235.7 199 64.3
Sc20g0002230 Simmondsia chinensis HOM05D003984 ORTHO05D004740 2.3e-57 226.9 159 70.4
FAN01G2342 Fragaria x ananassa HOM05D003984 ORTHO05D004740 5.4e-54 215.7 143 74.8
SEGI_35779 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 3.8e-31 139.8 239 39.3
Cpa.g.sc1.281 Carica papaya HOM05D003984 ORTHO05D004740 2.4e-30 137.1 109 70.6
AagrBONN_evm.TU.Sc2ySwM_344.1695 Anthoceros agrestis HOM05D003984 ORTHO05D004740 2.5e-27 127.1 121 55.4
Actinidia29191 Actinidia chinensis HOM05D003984 ORTHO05D004740 2.8e-26 123.6 123 61.8
Pp3c14_5580 Physcomitrium patens HOM05D003984 ORTHO05D004740 2.4e-25 120.6 172 40.7
Mapoly0066s0078 Marchantia polymorpha HOM05D003984 ORTHO05D004740 4.0e-25 119.8 162 45.7
TAR624G0784 Trochodendron aralioides HOM05D003984 ORTHO05D004740 3.4e-24 116.7 74 77.0
CBR_g37750 Chara braunii HOM05D000019 ORTHO05D000002 2.1e-18 97.4 148 39.9
AUR62035988 Chenopodium quinoa HOM05D003984 ORTHO05D004740 2.4e-17 94.0 117 47.0
CBR_g10977 Chara braunii HOM05D003984 ORTHO05D004740 4.0e-17 93.2 124 41.9
FAN06G2469 Fragaria x ananassa HOM05D003984 ORTHO05D004740 1.9e-14 84.3 73 63.0
SEGI_13922 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 3.5e-13 80.1 67 65.7
HanXRQChr17g0557371 Helianthus annuus HOM05D000549 ORTHO05D004740 4.3e-11 73.2 39 79.5
SHI42769 Sapria himalayana HOM05D003984 ORTHO05D004740 2.8e-10 70.5 125 41.6
CSS0046661 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 4.8e-10 69.7 60 58.3
Nn6g33815 Nelumbo nucifera HOM05D003984 ORTHO05D004740 8.2e-10 68.9 37 81.1
RcHm_v2.0_Chr2g0140211 Rosa chinensis HOM05D003984 ORTHO05D004740 8.2e-10 68.9 43 69.8
SMO356G0399 Selaginella moellendorffii HOM05D003984 ORTHO05D004740 8.4e-07 58.9 150 34.0


User provided reference genes

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