Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1C919T16 Lonicera japonica HOM05D005934 ORTHO05D005165 1.6e-107 392.9 220 100.0
Prupe.2G216000 Prunus persica HOM05D005934 ORTHO05D005165 6.9e-82 307.8 256 71.9
Atru.chr12.720 Acer truncatum HOM05D005934 ORTHO05D005165 5.8e-81 304.7 260 71.5
Duzib114G0889 Durio zibethinus HOM05D005934 ORTHO05D005165 5.8e-81 304.7 260 70.8
MD01G1111100 Malus domestica HOM05D005934 ORTHO05D005165 3.8e-80 302.0 247 72.9
Thecc.10G070000 Theobroma cacao HOM05D005934 ORTHO05D005165 6.5e-80 301.2 260 70.8
FvH4_7g19882 Fragaria vesca HOM05D005934 ORTHO05D005165 1.6e-78 296.6 256 69.9
FAN03G0840 Fragaria x ananassa HOM05D005934 ORTHO05D005165 3.5e-78 295.4 256 69.1
FAN10G0472 Fragaria x ananassa HOM05D005934 ORTHO05D005165 3.5e-78 295.4 256 69.9
Gohir.D05G297500 Gossypium hirsutum HOM05D005934 ORTHO05D005165 3.5e-78 295.4 256 69.5
Gorai.009G314800 Gossypium raimondii HOM05D005934 ORTHO05D005165 7.9e-78 294.3 256 69.1
Cpa.g.sc53.46 Carica papaya HOM05D005934 ORTHO05D005165 1.0e-77 293.9 262 67.9
Eucgr.G02812 Eucalyptus grandis HOM05D005934 ORTHO05D005165 2.3e-77 292.7 260 68.1
CANSAT56G0550 Cannabis sativa HOM05D005934 ORTHO05D005165 3.0e-77 292.4 255 69.4
FAN01G0846 Fragaria x ananassa HOM05D005934 ORTHO05D005165 3.0e-77 292.4 256 68.8
FAN01G1479 Fragaria x ananassa HOM05D005934 ORTHO05D005165 3.0e-77 292.4 256 68.8
Gohir.A05G345500 Gossypium hirsutum HOM05D005934 ORTHO05D005165 3.9e-77 292.0 259 68.0
QL08p056591 Quercus lobata HOM05D005934 ORTHO05D005165 3.9e-77 292.0 255 69.8
Solyc04g047750.3 Solanum lycopersicum HOM05D005934 ORTHO05D005165 1.9e-76 289.7 256 66.8
arahy.Tifrunner.gnm1.ann1.H195MC Arachis hypogaea HOM05D005934 ORTHO05D005165 2.5e-76 289.3 256 68.0
Nitab4.5_0008994g0010 Nicotiana tabacum HOM05D005934 ORTHO05D005165 2.5e-76 289.3 256 67.6
Gohir.A05G297600 Gossypium hirsutum HOM05D005934 ORTHO05D005165 3.3e-76 288.9 256 68.0
CSS0026746 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 4.3e-76 288.5 249 69.5
Gohir.D04G084700 Gossypium hirsutum HOM05D005934 ORTHO05D005165 4.3e-76 288.5 259 66.8
Nitab4.5_0000233g0170 Nicotiana tabacum HOM05D005934 ORTHO05D005165 5.7e-76 288.1 255 67.5
PGR142G2623 Punica granatum HOM05D005934 ORTHO05D005165 7.4e-76 287.7 256 68.4
Sopen04g017890 Solanum pennellii HOM05D005934 ORTHO05D005165 7.4e-76 287.7 255 66.7
TPR.G1756 Trifolium pratense HOM05D005934 ORTHO05D005165 1.3e-75 287.0 256 68.4
Medtr1g095640 Medicago truncatula HOM05D005934 ORTHO05D005165 2.1e-75 286.2 263 66.5
TWI38G0616 Tripterygium wilfordii HOM05D005934 ORTHO05D005165 2.1e-75 286.2 256 69.1
PSO339G5008 Papaver somniferum HOM05D005934 ORTHO05D005165 2.8e-75 285.8 259 66.8
Lj5g0021458 Lotus japonicus HOM05D005934 ORTHO05D005165 3.7e-75 285.4 260 66.9
Hund19343 Selenicereus undatus HOM05D005934 ORTHO05D005165 3.7e-75 285.4 212 76.4
Phvul.007G092600 Phaseolus vulgaris HOM05D005934 ORTHO05D005165 1.1e-74 283.9 256 66.4
Carub.0008s1083 Capsella rubella HOM05D005934 ORTHO05D005165 4.1e-74 282.0 259 66.0
RcHm_v2.0_Chr1g0363881 Rosa chinensis HOM05D005934 ORTHO05D005165 1.2e-73 280.4 256 66.8
AL8G25010 Arabidopsis lyrata HOM05D005934 ORTHO05D005165 2.0e-73 279.6 256 66.8
C03p19490 Brassica napus HOM05D005934 ORTHO05D005165 3.4e-73 278.9 258 65.1
BolC3t14330H Brassica oleracea HOM05D005934 ORTHO05D005165 3.4e-73 278.9 258 65.1
A03p16560 Brassica napus HOM05D005934 ORTHO05D005165 4.5e-73 278.5 258 65.1
BraA03t10943Z Brassica rapa HOM05D005934 ORTHO05D005165 4.5e-73 278.5 258 65.1
Aqoxy2G01769 Aquilegia oxysepala HOM05D005934 ORTHO05D005165 1.0e-72 277.3 255 66.7
AT5G50840 Arabidopsis thaliana HOM05D005934 ORTHO05D005165 1.0e-72 277.3 256 66.0
Sed0003296 Sechium edule HOM05D005934 ORTHO05D005165 1.3e-72 276.9 253 68.0
CiPaw.02G175500 Carya illinoinensis HOM05D005934 ORTHO05D005165 1.7e-72 276.6 255 67.1
PSO541G4936 Papaver somniferum HOM05D005934 ORTHO05D005165 1.7e-72 276.6 259 65.6
Haze_16922 Corylus avellana HOM05D005934 ORTHO05D005165 2.2e-72 276.2 279 63.1
Sp6g12980 Schrenkiella parvula HOM05D005934 ORTHO05D005165 2.9e-72 275.8 256 66.0
Glyma.20G178100 Glycine max HOM05D005934 ORTHO05D005165 3.8e-72 275.4 256 65.2
Thhalv10013687m.g Eutrema salsugineum HOM05D005934 ORTHO05D005165 5.0e-72 275.0 256 65.6
C02p20680 Brassica napus HOM05D005934 ORTHO05D005165 1.1e-71 273.9 258 64.3
BolC2t08210H Brassica oleracea HOM05D005934 ORTHO05D005165 1.1e-71 273.9 258 64.3
Ca_10584_v3 Cicer arietinum L. HOM05D005934 ORTHO05D005165 5.5e-71 271.6 259 63.7
BcaC03g14634 Brassica carinata HOM05D005934 ORTHO05D005165 9.3e-71 270.8 258 63.6
Cc02_g11420 Coffea canephora HOM05D005934 ORTHO05D005165 1.6e-70 270.0 260 64.2
arahy.Tifrunner.gnm1.ann1.W2M3W6 Arachis hypogaea HOM05D005934 ORTHO05D005165 4.6e-70 268.5 257 65.0
MD07G1177300 Malus domestica HOM05D005934 ORTHO05D005165 6.1e-70 268.1 247 68.4
CARHR257410 Cardamine hirsuta HOM05D005934 ORTHO05D005165 2.3e-69 266.2 258 63.2
CAN.G471.3 Capsicum annuum HOM05D005934 ORTHO05D005165 3.9e-69 265.4 256 62.9
BcaB05g24030 Brassica carinata HOM05D005934 ORTHO05D005165 8.7e-69 264.2 262 62.2
MSTRG.27465 Avicennia marina HOM05D005934 ORTHO05D005165 3.7e-67 258.8 256 64.1
A02p12610 Brassica napus HOM05D005934 ORTHO05D005165 6.3e-67 258.1 243 63.4
BraA02t06319Z Brassica rapa HOM05D005934 ORTHO05D005165 6.3e-67 258.1 258 61.2
ATR0759G024 Amborella trichopoda HOM05D005934 ORTHO05D005165 8.2e-67 257.7 249 62.2
COL.COLO4_23717 Corchorus olitorius HOM05D005934 ORTHO05D005165 9.0e-66 254.2 227 69.2
VMungo0720G0064 Vigna mungo HOM05D005934 ORTHO05D005165 2.0e-65 253.1 224 67.0
ClCG09G020550 Citrullus lanatus HOM05D005934 ORTHO05D005165 3.4e-65 252.3 231 66.2
CSS0046829 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 1.0e-64 250.8 249 63.1
Ciclev10031457m.g Citrus clementina HOM05D005934 ORTHO05D005165 2.2e-64 249.6 256 61.7
Manes.10G044200 Manihot esculenta HOM05D005934 ORTHO05D005165 2.9e-64 249.2 256 63.3
vmacro07085 Vaccinium macrocarpon HOM05D005934 ORTHO05D005165 5.0e-64 248.4 379 47.8
Os03g0288600 Oryza sativa ssp. japonica HOM05D005934 ORTHO05D005165 3.2e-63 245.7 254 56.3
TWI63G0603 Tripterygium wilfordii HOM05D005934 ORTHO05D005165 5.5e-63 245.0 256 61.3
CSS0015713 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 9.4e-63 244.2 261 61.7
Migut.F01993 Erythranthe guttata HOM05D005934 ORTHO05D005165 1.6e-62 243.4 254 60.2
Psat6g182920 Pisum sativum HOM05D005934 ORTHO05D005165 1.6e-62 243.4 255 60.4
unitig_899.g14449 Utricularia gibba HOM05D005934 ORTHO05D005165 1.6e-62 243.4 248 60.5
EL10Ac2g03586 Beta vulgaris HOM05D005934 ORTHO05D005165 6.7e-61 238.0 300 53.0
Sc09g0006590 Simmondsia chinensis HOM05D005934 ORTHO05D005165 1.1e-60 237.3 251 60.6
Zm00001eb397090 Zea mays HOM05D005934 ORTHO05D005165 3.7e-59 232.3 249 55.8
Lalb_Chr02g0141961 Lupinus albus HOM05D005934 ORTHO05D005165 4.1e-58 228.8 256 58.2
Oeu043928.1 Olea europaea HOM05D005934 ORTHO05D005165 1.4e-55 220.3 260 56.2
TAR636G3344 Trochodendron aralioides HOM05D005934 ORTHO05D005165 4.2e-55 218.8 259 54.8
AUR62027949 Chenopodium quinoa HOM05D005934 ORTHO05D005165 3.6e-54 215.7 313 49.2
SGA_v2.0_scaffold13G06359 Striga asiatica HOM05D005934 ORTHO05D005165 7.9e-54 214.5 260 54.6
Ah.11g043450 Amaranthus hybridus HOM05D005934 ORTHO05D005165 2.6e-52 209.5 262 53.4
Dinv31355 Davidia involucrata HOM05D005934 ORTHO05D005165 1.3e-51 207.2 260 53.8
GSVIVG01016314001 Vitis vinifera HOM05D005934 ORTHO05D005165 4.8e-51 205.3 255 54.5
Gorai.012G094400 Gossypium raimondii HOM05D005934 ORTHO05D005165 3.5e-49 199.1 183 65.6
Zm00001eb013240 Zea mays HOM05D005934 ORTHO05D005165 7.7e-49 198.0 249 50.2
AUR62020763 Chenopodium quinoa HOM05D005934 ORTHO05D005165 1.3e-48 197.2 227 57.7
DCAR_003640 Daucus carota HOM05D005934 ORTHO05D005165 1.9e-47 193.4 228 55.3
THA.LOC104819151 Tarenaya hassleriana HOM05D005934 ORTHO05D005165 5.7e-44 181.8 245 51.4
SMO201G0134 Selaginella moellendorffii HOM05D005934 ORTHO05D005165 9.1e-42 174.5 239 46.4
Lsat_1_v5_gn_2_113761 Lactuca sativa HOM05D005934 ORTHO05D005165 2.7e-41 172.9 229 52.8
Dinv11795 Davidia involucrata HOM05D005934 ORTHO05D005165 1.9e-39 166.8 260 48.1
Potri.010G219700 Populus trichocarpa HOM05D005934 ORTHO05D005165 3.2e-39 166.0 256 48.0
CBR_g15990 Chara braunii HOM05D005934 ORTHO05D005165 4.7e-38 162.2 241 44.0
Sabra10G0169500 Salix brachista HOM05D005934 ORTHO05D005165 8.0e-38 161.4 256 47.3
MELO3C002886.2 Cucumis melo HOM05D005934 ORTHO05D005165 1.8e-37 160.2 260 45.8
TAR633G0441 Trochodendron aralioides HOM05D005934 ORTHO05D005165 2.6e-36 156.4 259 45.9
HanXRQChr11g0323311 Helianthus annuus HOM05D005934 ORTHO05D005165 1.7e-35 153.7 261 46.0
CsaV3_5G025820 Cucumis sativus L. HOM05D005934 ORTHO05D005165 8.3e-35 151.4 260 44.2
HanXRQChr14g0457271 Helianthus annuus HOM05D005934 ORTHO05D005165 7.0e-34 148.3 253 45.1
ECA238G0735 Erigeron canadensis HOM05D005934 ORTHO05D005165 9.1e-34 147.9 260 44.6
Aa31LG3G7310 Aethionema arabicum HOM05D005934 ORTHO05D005165 1.6e-33 147.1 246 45.5
Aa31LG3G7290 Aethionema arabicum HOM05D005934 ORTHO05D005165 2.1e-30 136.7 164 53.0
Mapoly0007s0101 Marchantia polymorpha HOM05D005934 ORTHO05D005165 6.8e-29 131.7 253 37.2
Nn2g10703 Nelumbo nucifera HOM05D005934 ORTHO05D005165 2.0e-28 130.2 88 83.0
THA.LOC104819150 Tarenaya hassleriana HOM05D005934 ORTHO05D005165 2.7e-25 119.8 143 55.9
Hund22502 Selenicereus undatus HOM05D005934 ORTHO05D005165 1.9e-23 113.6 256 39.5
SalBow4G0998 Salvia bowleyana HOM05D011515 ORTHO05D005165 1.6e-22 110.5 92 68.5
SalBow4G2489 Salvia bowleyana HOM05D011515 ORTHO05D005165 1.6e-22 110.5 92 68.5
Actinidia38257 Actinidia chinensis HOM05D005934 ORTHO05D005165 1.4e-21 107.5 257 39.3
Pp3c11_23150 Physcomitrium patens HOM05D005934 ORTHO05D005165 2.3e-21 106.7 235 34.9
Lsat_1_v5_gn_1_128800 Lactuca sativa HOM05D005934 ORTHO05D005165 6.8e-21 105.1 143 53.1
Actinidia03038 Actinidia chinensis HOM05D005934 ORTHO05D005165 4.1e-18 95.9 156 46.8
Peaxi162Scf00108g01212 Petunia axillaris HOM05D005934 ORTHO05D005165 4.1e-18 95.9 156 44.2
MBI05_g20541_MAGBIO Magnolia biondii HOM05D005934 ORTHO05D005165 7.0e-18 95.1 239 37.2
Peaxi162Scf00108g01217 Petunia axillaris HOM05D005934 ORTHO05D005165 2.7e-17 93.2 49 95.9
Atru.chr12.721 Acer truncatum HOM05D002519 ORTHO05D005165 4.6e-17 92.4 87 63.2
HPP92_006750 Vanilla planifolia HOM05D005934 ORTHO05D005165 5.6e-15 85.5 68 66.2
A03p42390 Brassica napus HOM05D005934 ORTHO05D005165 4.0e-13 79.3 60 71.7
BraA03t13391Z Brassica rapa HOM05D005934 ORTHO05D005165 4.0e-13 79.3 60 71.7
Medtr1g101870 Medicago truncatula HOM05D000280 ORTHO05D000632 5.8e-12 75.5 49 77.6
MCO09G455 Micromonas commoda HOM05D005934 ORTHO05D005165 1.9e-10 70.5 199 31.7
HPP92_006751 Vanilla planifolia HOM05D005934 ORTHO05D005165 6.6e-08 62.0 119 44.5
Cre12.g546300 Chlamydomonas reinhardtii HOM05D005934 ORTHO05D005165 5.6e-07 58.9 244 27.5


User provided reference genes

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