Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1C905G3 Lonicera japonica HOM05D005971 ORTHO05D007459 0.0e+00 2035.4 1003 100.0
Dinv19623 Davidia involucrata HOM05D005971 ORTHO05D007459 0.0e+00 1331.6 1023 65.1
Actinidia35435 Actinidia chinensis HOM05D005971 ORTHO05D007459 0.0e+00 1219.1 1022 60.1
CSS0033662 Camellia sinensis var. sinensis HOM05D005971 ORTHO05D007459 0.0e+00 1191.8 981 61.4
CSS0049989 Camellia sinensis var. sinensis HOM05D005971 ORTHO05D007459 0.0e+00 1168.7 981 60.4
Potri.001G457550 Populus trichocarpa HOM05D005971 ORTHO05D007459 0.0e+00 1134.0 1001 56.2
TAR626G0017 Trochodendron aralioides HOM05D005971 ORTHO05D007459 0.0e+00 1120.1 1029 55.6
Sopen10g001570 Solanum pennellii HOM05D005971 ORTHO05D007459 0.0e+00 1085.9 1014 53.8
Migut.M01561 Erythranthe guttata HOM05D005971 ORTHO05D007459 0.0e+00 1085.5 1015 54.5
QL04p073974 Quercus lobata HOM05D005971 ORTHO05D007459 0.0e+00 1084.3 1054 53.4
Oeu052011.1 Olea europaea HOM05D005971 ORTHO05D007459 0.0e+00 1083.2 1005 55.0
Sabra16G0310100 Salix brachista HOM05D005971 ORTHO05D007459 0.0e+00 1083.2 1026 53.6
Cfa019419 Carpinus fangiana HOM05D005971 ORTHO05D007459 0.0e+00 1078.2 975 55.8
Atru.chr12.2184 Acer truncatum HOM05D005971 ORTHO05D007459 0.0e+00 1077.8 1009 53.9
FvH4_3g15860 Fragaria vesca HOM05D005971 ORTHO05D007459 1.4e-311 1072.8 1017 54.2
MD05G1219300 Malus domestica HOM05D005971 ORTHO05D007459 4.0e-310 1068.1 1017 54.7
CAN.G492.69 Capsicum annuum HOM05D005971 ORTHO05D007459 2.0e-309 1065.8 1015 52.9
FAN11G3334 Fragaria x ananassa HOM05D005971 ORTHO05D007459 2.0e-309 1065.8 1017 54.3
RcHm_v2.0_Chr5g0026671 Rosa chinensis HOM05D005971 ORTHO05D007459 9.2e-307 1057.0 1007 53.9
Ciclev10018677m.g Citrus clementina HOM05D005971 ORTHO05D007459 6.6e-305 1050.8 1000 53.1
FAN16G0465 Fragaria x ananassa HOM05D005971 ORTHO05D007459 1.9e-304 1049.3 1017 54.1
Cc05_g16010 Coffea canephora HOM05D005971 ORTHO05D007459 1.7e-300 1036.2 1009 52.4
Peaxi162Scf00267g01016 Petunia axillaris HOM05D005971 ORTHO05D007459 9.5e-296 1020.4 1000 52.0
CANSAT80G2256 Cannabis sativa HOM05D005971 ORTHO05D007459 2.8e-295 1018.8 1010 51.3
Nitab4.5_0000611g0060 Nicotiana tabacum HOM05D005971 ORTHO05D007459 7.5e-293 1010.7 982 53.0
SGA_v2.0_scaffold7G03577 Striga asiatica HOM05D005971 ORTHO05D007459 2.4e-291 1005.7 1007 52.2
Duzib268G0338 Durio zibethinus HOM05D005971 ORTHO05D007459 1.4e-283 979.9 1002 51.3
ClCG11G016380 Citrullus lanatus HOM05D005971 ORTHO05D007459 1.2e-282 976.9 1000 50.4
Glyma.15G255000 Glycine max HOM05D005971 ORTHO05D007459 1.2e-282 976.9 1017 49.1
TWI39G0032 Tripterygium wilfordii HOM05D005971 ORTHO05D007459 3.9e-281 971.8 1018 50.4
Solyc10g005600.4 Solanum lycopersicum HOM05D005971 ORTHO05D007459 1.1e-280 970.3 1014 49.9
ECA240G1928 Erigeron canadensis HOM05D005971 ORTHO05D007459 2.8e-279 965.7 991 51.5
Nitab4.5_0004488g0030 Nicotiana tabacum HOM05D005971 ORTHO05D007459 1.8e-278 963.0 1002 50.2
Lsat_1_v5_gn_7_71401 Lactuca sativa HOM05D005971 ORTHO05D007459 4.4e-277 958.4 1011 51.5
DCAR_009638 Daucus carota HOM05D005971 ORTHO05D007459 3.8e-276 955.3 938 52.3
TPR.G9756 Trifolium pratense HOM05D005971 ORTHO05D007459 3.8e-276 955.3 1019 49.1
vmacro09786 Vaccinium macrocarpon HOM05D005971 ORTHO05D007459 1.9e-275 953.0 1012 51.1
HanXRQChr05g0160991 Helianthus annuus HOM05D005971 ORTHO05D007459 3.2e-275 952.2 1003 51.1
Rhsim04G0005800 Rhododendron simsii HOM05D005971 ORTHO05D007459 5.4e-275 951.4 1132 47.3
Phvul.005G056400 Phaseolus vulgaris HOM05D005971 ORTHO05D007459 1.2e-274 950.3 1013 48.3
CsaV3_4G031820 Cucumis sativus L. HOM05D005971 ORTHO05D007459 4.6e-274 948.3 1001 49.5
Lalb_Chr25g0285011 Lupinus albus HOM05D005971 ORTHO05D007459 7.8e-274 947.6 1012 48.5
Gorai.013G178300 Gossypium raimondii HOM05D005971 ORTHO05D007459 1.0e-273 947.2 1027 49.6
arahy.Tifrunner.gnm1.ann1.MUD8D6 Arachis hypogaea HOM05D005971 ORTHO05D007459 3.0e-273 945.7 1006 48.2
THA.LOC104822751 Tarenaya hassleriana HOM05D005971 ORTHO05D007459 3.9e-273 945.3 994 48.8
Lj3g0007743 Lotus japonicus HOM05D005971 ORTHO05D007459 5.6e-272 941.4 1016 48.9
Medtr2g069560 Medicago truncatula HOM05D005971 ORTHO05D007459 1.4e-270 936.8 1019 47.8
Psat1g011400 Pisum sativum HOM05D005971 ORTHO05D007459 2.4e-270 936.0 1018 47.9
Ca_03684_v3 Cicer arietinum L. HOM05D005971 ORTHO05D007459 5.8e-269 931.4 1019 48.0
PSO675G3107 Papaver somniferum HOM05D005971 ORTHO05D007459 5.6e-264 914.8 1009 48.2
GSVIVG01020430001 Vitis vinifera HOM05D005971 ORTHO05D007459 1.3e-263 913.7 917 51.6
Aqoxy2G04113 Aquilegia oxysepala HOM05D005971 ORTHO05D007459 8.1e-263 911.0 1027 48.6
AL1G14000 Arabidopsis lyrata HOM05D005971 ORTHO05D007459 8.1e-263 911.0 996 47.0
SalBow8G3201 Salvia bowleyana HOM05D005971 ORTHO05D007459 8.1e-263 911.0 998 49.5
Aa31LG1G20480 Aethionema arabicum HOM05D005971 ORTHO05D007459 4.0e-262 908.7 995 46.0
PGR031G0315 Punica granatum HOM05D005971 ORTHO05D007459 2.6e-261 906.0 1019 46.4
BolC5t29039H Brassica oleracea HOM05D005971 ORTHO05D007459 2.9e-260 902.5 987 46.0
C05p02580 Brassica napus HOM05D005971 ORTHO05D007459 6.4e-260 901.4 987 46.1
Prupe.4G140600 Prunus persica HOM05D005971 ORTHO05D007459 1.4e-259 900.2 951 50.6
AT1G04390 Arabidopsis thaliana HOM05D005971 ORTHO05D007459 4.2e-259 898.7 996 46.2
Ah.06g185720 Amaranthus hybridus HOM05D005971 ORTHO05D007459 4.6e-258 895.2 1021 44.3
PSO017G5934 Papaver somniferum HOM05D005971 ORTHO05D007459 1.0e-257 894.0 1011 47.2
A10p02830 Brassica napus HOM05D005971 ORTHO05D007459 5.1e-257 891.7 993 45.6
Carub.0001s0356 Capsella rubella HOM05D005971 ORTHO05D007459 2.5e-256 889.4 999 45.1
EL10Ac2g03354 Beta vulgaris HOM05D005971 ORTHO05D007459 4.3e-256 888.6 1018 44.9
Manes.14G015836 Manihot esculenta HOM05D005971 ORTHO05D007459 1.1e-254 884.0 840 52.3
Sed0013026 Sechium edule HOM05D005971 ORTHO05D007459 1.0e-249 867.5 922 49.1
GSVIVG01020427001 Vitis vinifera HOM05D005971 ORTHO05D007459 3.6e-234 815.8 919 48.4
FAN21G1476 Fragaria x ananassa HOM05D005971 ORTHO05D007459 7.9e-234 814.7 998 45.7
Atru.chr12.2179 Acer truncatum HOM05D005971 ORTHO05D007459 7.4e-232 808.1 750 53.7
Hma1.2p1_0637F.1_g193590 Hydrangea macrophylla HOM05D005971 ORTHO05D007459 7.0e-214 748.4 1080 42.3
BraA10t42550Z Brassica rapa HOM05D005971 ORTHO05D007459 2.0e-213 746.9 991 40.5
Thecc.07G154200 Theobroma cacao HOM05D005971 ORTHO05D007459 2.2e-212 743.4 828 47.7
Nn7g37820 Nelumbo nucifera HOM05D005971 ORTHO05D007459 1.1e-211 741.1 832 48.0
Hund12466 Selenicereus undatus HOM05D005971 ORTHO05D007459 2.7e-210 736.5 879 43.2
AUR62038398 Chenopodium quinoa HOM05D005971 ORTHO05D007459 1.0e-209 734.6 1018 39.4
MBI02_g40085_MAGBIO Magnolia biondii HOM05D005971 ORTHO05D007459 1.2e-205 721.1 854 44.1
Thhalv10006788m.g Eutrema salsugineum HOM05D005971 ORTHO05D007459 1.6e-202 710.7 998 39.6
Sc06g0001560 Simmondsia chinensis HOM05D005971 ORTHO05D007459 3.7e-199 699.5 745 46.0
Eucgr.F03182 Eucalyptus grandis HOM05D005971 ORTHO05D007459 1.1e-198 698.0 754 47.6
MELO3C010564.2 Cucumis melo HOM05D005971 ORTHO05D007459 2.4e-198 696.8 999 40.8
VMungo1080G0173 Vigna mungo HOM05D005971 ORTHO05D007459 2.3e-196 690.3 841 44.4
CARHR003720 Cardamine hirsuta HOM05D005971 ORTHO05D007459 2.9e-175 620.2 725 44.4
PGSC0003DMG402011239 Solanum tuberosum HOM05D005971 ORTHO05D007459 9.2e-174 615.1 575 53.2
Sp1g03210 Schrenkiella parvula HOM05D005971 ORTHO05D007459 1.0e-172 611.7 711 43.2
Cpa.g.sc10.37 Carica papaya HOM05D005971 ORTHO05D007459 7.8e-165 585.5 794 41.7
ATR0165G004 Amborella trichopoda HOM05D005971 ORTHO05D007459 1.8e-161 574.3 1011 35.1
Gohir.D13G157500 Gossypium hirsutum HOM05D005971 ORTHO05D007459 1.4e-158 564.7 588 51.0
CDE12G0091 Ceratophyllum demersum HOM05D005971 ORTHO05D007459 2.4e-137 494.2 755 38.5
PGSC0003DMG401011239 Solanum tuberosum HOM05D005971 ORTHO05D007459 4.3e-131 473.4 438 54.3
Zm00001eb273960 Zea mays HOM05D005971 ORTHO05D007459 1.2e-125 455.3 880 32.7
Gohir.A13G153066 Gossypium hirsutum HOM05D005971 ORTHO05D007459 1.0e-124 452.2 430 53.7
Pp3c6_21780 Physcomitrium patens HOM05D005971 ORTHO05D007459 9.4e-102 375.9 1034 27.8
Mapoly0060s0028 Marchantia polymorpha HOM05D005971 ORTHO05D007459 1.6e-96 358.6 992 27.3
unitig_26.g10082 Utricularia gibba HOM05D005971 ORTHO05D007459 3.5e-96 357.5 997 28.3
Gohir.A13G153099 Gossypium hirsutum HOM05D005971 ORTHO05D007459 2.3e-92 344.7 491 43.6
FAN25G3291 Fragaria x ananassa HOM05D005971 ORTHO05D007459 1.3e-90 339.0 377 49.6
Cpa.g.sc10.38 Carica papaya HOM05D005971 ORTHO05D007459 3.9e-71 274.2 197 62.9
Peaxi162Scf00095g00013 Petunia axillaris HOM05D005971 ORTHO05D007459 6.6e-71 273.5 258 53.1
HPP92_026349 Vanilla planifolia HOM05D005971 ORTHO05D007459 2.5e-70 271.6 507 35.9
Nn7g37821 Nelumbo nucifera HOM05D005971 ORTHO05D007459 1.6e-69 268.9 193 63.2
Os06g0674800 Oryza sativa ssp. japonica HOM05D005971 ORTHO05D007459 5.6e-62 243.8 428 33.6
HPP92_026348 Vanilla planifolia HOM05D005971 ORTHO05D007459 4.7e-61 240.7 310 39.4
Peaxi162Scf01123g00008 Petunia axillaris HOM05D005971 ORTHO05D007459 4.0e-60 237.7 234 50.9
CARHR003730 Cardamine hirsuta HOM05D005971 ORTHO05D007459 6.8e-60 236.9 231 51.5
Peaxi162Scf01123g00003 Petunia axillaris HOM05D005971 ORTHO05D007459 4.4e-59 234.2 442 35.5
Atru.chr12.2180 Acer truncatum HOM05D005971 ORTHO05D007459 1.7e-58 232.3 224 53.1
Haze_08564 Corylus avellana HOM05D005971 ORTHO05D000006 2.8e-53 214.9 144 70.8
arahy.Tifrunner.gnm1.ann1.Q40ZT9 Arachis hypogaea HOM05D005971 ORTHO05D007459 3.2e-41 174.9 187 48.1
GSVIVG01020426001 Vitis vinifera HOM05D005971 ORTHO05D007459 3.5e-40 171.4 176 46.6
Gohir.D13G157600 Gossypium hirsutum HOM05D005971 ORTHO05D007459 4.6e-40 171.0 195 46.2
VMungo1080G1570 Vigna mungo HOM05D005971 ORTHO05D007459 2.3e-39 168.7 140 53.6
GSVIVG01020425001 Vitis vinifera HOM05D005971 ORTHO05D007459 2.0e-35 155.6 147 50.3
COL.COLO4_20820 Corchorus olitorius HOM05D005971 ORTHO05D007459 6.6e-31 140.6 115 60.0
Glyma.13G358366 Glycine max HOM05D005971 ORTHO05D007459 3.3e-30 138.3 148 47.3
Glyma.13G098800 Glycine max HOM05D005971 ORTHO05D007459 2.1e-29 135.6 148 46.6
C03p00610 Brassica napus HOM05D005971 ORTHO05D040551 1.3e-26 126.3 157 40.1
Zm00001eb395680 Zea mays HOM05D005971 ORTHO05D007459 3.9e-23 114.8 257 29.6
Glyma.08G171633 Glycine max HOM05D005971 ORTHO05D007459 1.1e-22 113.2 93 57.0
Sc06g0001570 Simmondsia chinensis HOM05D005971 ORTHO05D007459 1.4e-20 106.3 96 51.0
Glyma.13G358300 Glycine max HOM05D005971 ORTHO05D007459 1.1e-17 96.7 185 33.5
BolC3t12626H Brassica oleracea HOM05D005971 ORTHO05D040551 1.9e-17 95.9 157 33.8
CDE12G0613 Ceratophyllum demersum HOM05D005971 ORTHO05D007459 7.1e-17 94.0 95 43.2
Glyma.13G052600 Glycine max HOM05D005971 ORTHO05D007459 1.2e-08 66.6 124 33.9
GSVIVG01020432001 Vitis vinifera HOM05D005971 ORTHO05D007459 4.6e-08 64.7 71 43.7
CAN.G1199.4 Capsicum annuum HOM05D002053 ORTHO05D007459 6.1e-08 64.3 47 55.3
Glyma.08G171600 Glycine max HOM05D005971 ORTHO05D007459 3.0e-07 62.0 68 48.5


User provided reference genes

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