Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1C898T24 Lonicera japonica HOM05D004535 ORTHO05D005341 0.0e+00 3593.5 1827 100.0
Dinv19653 Davidia involucrata HOM05D004535 ORTHO05D005341 0.0e+00 3030.0 1840 83.4
CSS0018371 Camellia sinensis var. sinensis HOM05D004535 ORTHO05D005341 0.0e+00 2947.5 1833 81.0
Hma1.2p1_0193F.1_g084240 Hydrangea macrophylla HOM05D004535 ORTHO05D005341 0.0e+00 2937.9 1835 80.5
GSVIVG01014769001 Vitis vinifera HOM05D004535 ORTHO05D005341 0.0e+00 2935.6 1836 81.2
Rhsim04G0008600 Rhododendron simsii HOM05D004535 ORTHO05D005341 0.0e+00 2894.8 1849 78.7
Atru.chr2.3782 Acer truncatum HOM05D004535 ORTHO05D005341 0.0e+00 2873.6 1836 78.8
Prupe.6G032900 Prunus persica HOM05D004535 ORTHO05D005341 0.0e+00 2840.8 1836 78.2
Ciclev10007234m.g Citrus clementina HOM05D004535 ORTHO05D005341 0.0e+00 2838.5 1842 77.8
vmacro09603 Vaccinium macrocarpon HOM05D004535 ORTHO05D005341 0.0e+00 2837.4 1941 74.7
TAR627G0331 Trochodendron aralioides HOM05D004535 ORTHO05D005341 0.0e+00 2825.4 1836 77.8
MD11G1042000 Malus domestica HOM05D004535 ORTHO05D005341 0.0e+00 2825.0 1836 77.8
CiPaw.11G209600 Carya illinoinensis HOM05D004535 ORTHO05D005341 0.0e+00 2821.6 1838 77.8
Manes.01G005500 Manihot esculenta HOM05D004535 ORTHO05D005341 0.0e+00 2817.7 1836 77.6
FAN11G1653 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 2806.5 1838 76.9
MD03G1040600 Malus domestica HOM05D004535 ORTHO05D005341 0.0e+00 2806.5 1836 77.4
CANSAT11G1644 Cannabis sativa HOM05D004535 ORTHO05D005341 0.0e+00 2802.7 1838 77.0
RcHm_v2.0_Chr5g0075021 Rosa chinensis HOM05D004535 ORTHO05D005341 0.0e+00 2802.7 1838 76.5
FAN16G2454 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 2802.3 1838 76.8
FAN21G2952 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 2795.8 1838 76.6
HanXRQChr03g0079281 Helianthus annuus HOM05D004535 ORTHO05D005341 0.0e+00 2790.8 1836 76.1
Potri.001G470600 Populus trichocarpa HOM05D004535 ORTHO05D005341 0.0e+00 2789.6 1836 76.1
FAN25G2892 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 2788.4 1838 76.4
Thecc.07G003100 Theobroma cacao HOM05D004535 ORTHO05D005341 0.0e+00 2778.0 1783 78.5
TWI38G2299 Tripterygium wilfordii HOM05D004535 ORTHO05D005341 0.0e+00 2776.9 1838 76.5
Gorai.009G454100 Gossypium raimondii HOM05D004535 ORTHO05D005341 0.0e+00 2772.3 1806 77.4
Sopen07g034220 Solanum pennellii HOM05D004535 ORTHO05D005341 0.0e+00 2763.8 1835 75.7
Solyc07g066030.4 Solanum lycopersicum HOM05D004535 ORTHO05D005341 0.0e+00 2761.9 1835 75.7
Cc05_g15580 Coffea canephora HOM05D004535 ORTHO05D005341 0.0e+00 2759.9 1842 75.6
ECA240G2049 Erigeron canadensis HOM05D004535 ORTHO05D005341 0.0e+00 2750.7 1835 75.6
Eucgr.F02001 Eucalyptus grandis HOM05D004535 ORTHO05D005341 0.0e+00 2731.4 1834 74.3
Psat5g164120 Pisum sativum HOM05D004535 ORTHO05D005341 0.0e+00 2728.0 1839 74.8
Migut.M01591 Erythranthe guttata HOM05D004535 ORTHO05D005341 0.0e+00 2720.7 1835 74.6
QL08p000781 Quercus lobata HOM05D004535 ORTHO05D005341 0.0e+00 2719.5 1791 77.4
Lsat_1_v5_gn_9_89621 Lactuca sativa HOM05D004535 ORTHO05D005341 0.0e+00 2718.3 1811 76.0
Haze_09903 Corylus avellana HOM05D004535 ORTHO05D005341 0.0e+00 2717.2 1874 75.0
Glyma.18G071500 Glycine max HOM05D004535 ORTHO05D005341 0.0e+00 2716.8 1838 74.2
Lj6g0015552 Lotus japonicus HOM05D004535 ORTHO05D005341 0.0e+00 2715.3 1838 74.2
Gohir.D05G387450 Gossypium hirsutum HOM05D004535 ORTHO05D005341 0.0e+00 2711.0 1806 76.2
Medtr3g461520 Medicago truncatula HOM05D004535 ORTHO05D005341 0.0e+00 2709.9 1838 74.0
Sabra11G0138700 Salix brachista HOM05D004535 ORTHO05D005341 0.0e+00 2707.2 1991 69.7
FvH4_3g41830 Fragaria vesca HOM05D004535 ORTHO05D005341 0.0e+00 2704.1 1756 77.2
Glyma.08G336400 Glycine max HOM05D004535 ORTHO05D005341 0.0e+00 2701.0 1839 73.8
Lalb_Chr18g0050431 Lupinus albus HOM05D004535 ORTHO05D005341 0.0e+00 2692.1 1837 73.5
Sed0018073 Sechium edule HOM05D004535 ORTHO05D005341 0.0e+00 2692.1 1832 74.1
PGR083G0052 Punica granatum HOM05D004535 ORTHO05D005341 0.0e+00 2691.8 1832 73.3
Duzib213G0320 Durio zibethinus HOM05D004535 ORTHO05D005341 0.0e+00 2691.0 1837 74.9
Oeu013013.2 Olea europaea HOM05D004535 ORTHO05D005341 0.0e+00 2680.2 1911 72.3
MSTRG.15824 Avicennia marina HOM05D004535 ORTHO05D005341 0.0e+00 2678.3 1836 73.7
Lalb_Chr20g0115261 Lupinus albus HOM05D004535 ORTHO05D005341 0.0e+00 2676.4 1837 73.2
Nitab4.5_0001303g0050 Nicotiana tabacum HOM05D004535 ORTHO05D005341 0.0e+00 2676.0 1802 74.8
Aqoxy4G02281 Aquilegia oxysepala HOM05D004535 ORTHO05D005341 0.0e+00 2672.9 1836 73.4
Phvul.006G061700 Phaseolus vulgaris HOM05D004535 ORTHO05D005341 0.0e+00 2671.0 1835 72.9
TPR.G14720 Trifolium pratense HOM05D004535 ORTHO05D005341 0.0e+00 2667.9 1837 73.0
HanXRQChr13g0409231 Helianthus annuus HOM05D004535 ORTHO05D005341 0.0e+00 2665.2 1835 74.0
ClCG10G004180 Citrullus lanatus HOM05D004535 ORTHO05D005341 0.0e+00 2658.2 1844 73.1
SalBow8G3417 Salvia bowleyana HOM05D004535 ORTHO05D005341 0.0e+00 2652.1 1863 72.5
MELO3C014086.2 Cucumis melo HOM05D004535 ORTHO05D005341 0.0e+00 2649.4 1832 73.0
PSO210G5731 Papaver somniferum HOM05D004535 ORTHO05D005341 0.0e+00 2639.4 1835 72.6
THA.LOC104822705 Tarenaya hassleriana HOM05D004535 ORTHO05D005341 0.0e+00 2636.3 1838 72.3
DCAR_013765 Daucus carota HOM05D004535 ORTHO05D005341 0.0e+00 2631.3 1829 72.9
Thhalv10019881m.g Eutrema salsugineum HOM05D004535 ORTHO05D005341 0.0e+00 2630.1 1840 72.9
BcaB04g18753 Brassica carinata HOM05D004535 ORTHO05D005341 0.0e+00 2626.7 1836 72.3
CsaV3_3G003990 Cucumis sativus L. HOM05D004535 ORTHO05D005341 0.0e+00 2624.7 1832 72.4
Sc20g0000040 Simmondsia chinensis HOM05D004535 ORTHO05D005341 0.0e+00 2624.0 1835 71.8
AL3G25150 Arabidopsis lyrata HOM05D004535 ORTHO05D005341 0.0e+00 2623.2 1840 72.4
Carub.0003s1271 Capsella rubella HOM05D004535 ORTHO05D005341 0.0e+00 2620.5 1839 72.4
AT3G13330 Arabidopsis thaliana HOM05D004535 ORTHO05D005341 0.0e+00 2619.7 1839 72.4
arahy.Tifrunner.gnm1.ann1.DDNH16 Arachis hypogaea HOM05D004535 ORTHO05D005341 0.0e+00 2618.2 1916 69.9
BcaC01g03999 Brassica carinata HOM05D004535 ORTHO05D005341 0.0e+00 2607.8 1836 72.0
BolC3t16899H Brassica oleracea HOM05D004535 ORTHO05D005341 0.0e+00 2605.9 1837 71.9
BraA03t12967Z Brassica rapa HOM05D004535 ORTHO05D005341 0.0e+00 2605.5 1836 71.7
C03p46300 Brassica napus HOM05D004535 ORTHO05D005341 0.0e+00 2602.4 1836 71.9
A03p38140 Brassica napus HOM05D004535 ORTHO05D005341 0.0e+00 2602.0 1836 71.6
CARHR087940 Cardamine hirsuta HOM05D004535 ORTHO05D005341 0.0e+00 2599.3 1840 71.7
AUR62035634 Chenopodium quinoa HOM05D004535 ORTHO05D005341 0.0e+00 2596.2 1839 71.2
VMungo0540G2510 Vigna mungo HOM05D004535 ORTHO05D005341 0.0e+00 2593.5 1782 73.0
Sp3g11530 Schrenkiella parvula HOM05D004535 ORTHO05D005341 0.0e+00 2592.8 1837 71.4
Aa31LG8G550 Aethionema arabicum HOM05D004535 ORTHO05D005341 0.0e+00 2592.0 1837 71.4
Peaxi162Scf00232g00530 Petunia axillaris HOM05D004535 ORTHO05D005341 0.0e+00 2588.5 1853 71.9
AUR62017172 Chenopodium quinoa HOM05D004535 ORTHO05D005341 0.0e+00 2582.0 1851 70.4
EL10Ac4g07499 Beta vulgaris HOM05D004535 ORTHO05D005341 0.0e+00 2579.7 1832 71.0
Gohir.A04G001901 Gossypium hirsutum HOM05D004535 ORTHO05D005341 0.0e+00 2568.5 1694 77.2
SalBow8G2487 Salvia bowleyana HOM05D004535 ORTHO05D005341 0.0e+00 2558.9 1844 70.6
MBI15_g37116_MAGBIO Magnolia biondii HOM05D004535 ORTHO05D005341 0.0e+00 2548.1 1810 71.7
QL08p000755 Quercus lobata HOM05D004535 ORTHO05D005341 0.0e+00 2527.3 1963 67.1
Nn1g08312 Nelumbo nucifera HOM05D004535 ORTHO05D005341 0.0e+00 2502.6 1643 76.9
Hund22978 Selenicereus undatus HOM05D004535 ORTHO05D005341 0.0e+00 2496.5 1836 69.4
Actinidia03667 Actinidia chinensis HOM05D004535 ORTHO05D005341 0.0e+00 2486.4 1579 80.6
Medtr3g461500 Medicago truncatula HOM05D004535 ORTHO05D005341 0.0e+00 2479.1 1874 68.3
Nitab4.5_0000152g0130 Nicotiana tabacum HOM05D004535 ORTHO05D005341 0.0e+00 2439.8 1670 74.6
Haze_09904 Corylus avellana HOM05D004535 ORTHO05D005341 0.0e+00 2432.9 1922 67.1
Ah.06g180940 Amaranthus hybridus HOM05D004535 ORTHO05D005341 0.0e+00 2418.3 1858 66.4
ATR0751G071 Amborella trichopoda HOM05D004535 ORTHO05D005341 0.0e+00 2375.5 1840 65.3
HPP92_018915 Vanilla planifolia HOM05D004535 ORTHO05D005341 0.0e+00 2365.9 1846 65.0
CiPaw.12G142100 Carya illinoinensis HOM05D004535 ORTHO05D005341 0.0e+00 2241.5 1678 68.4
Ca_14867_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 0.0e+00 2228.4 1517 73.6
Cpa.g.sc12.80 Carica papaya HOM05D004535 ORTHO05D005341 0.0e+00 2225.7 1739 67.0
Zm00001eb281130 Zea mays HOM05D004535 ORTHO05D005341 0.0e+00 2169.4 1810 60.7
arahy.Tifrunner.gnm1.ann1.HJC4WF Arachis hypogaea HOM05D004535 ORTHO05D005341 0.0e+00 2166.7 1439 74.4
MD00G1206400 Malus domestica HOM05D004535 ORTHO05D005341 0.0e+00 1879.0 1252 76.3
CDE05G3236 Ceratophyllum demersum HOM05D004535 ORTHO05D005341 0.0e+00 1842.8 1528 62.2
Potri.011G167700 Populus trichocarpa HOM05D004535 ORTHO05D005341 0.0e+00 1822.4 1146 76.7
unitig_699.g19598 Utricularia gibba HOM05D004535 ORTHO05D005341 0.0e+00 1787.3 1835 53.9
PGSC0003DMG401022150 Solanum tuberosum HOM05D004535 ORTHO05D005341 0.0e+00 1494.2 944 77.1
Pp3c20_11540 Physcomitrium patens HOM05D004535 ORTHO05D005341 0.0e+00 1400.2 1874 42.5
Mapoly0071s0029 Marchantia polymorpha HOM05D004535 ORTHO05D005341 0.0e+00 1386.3 1947 41.3
AagrBONN_evm.TU.Sc2ySwM_228.5886 Anthoceros agrestis HOM05D004535 ORTHO05D005341 0.0e+00 1377.5 1872 42.4
Mapoly0069s0005 Marchantia polymorpha HOM05D004535 ORTHO05D005341 0.0e+00 1303.1 1895 39.6
CAN.G623.63 Capsicum annuum HOM05D004535 ORTHO05D005341 0.0e+00 1245.3 882 73.9
Pp3c15_5520 Physcomitrium patens HOM05D004535 ORTHO05D005341 0.0e+00 1233.8 1831 39.9
SMO184G0002 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 0.0e+00 1199.5 1877 37.9
SMO340G0109 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 0.0e+00 1174.5 1820 37.7
CAN.G623.64 Capsicum annuum HOM05D004535 ORTHO05D005341 0.0e+00 1107.8 944 62.7
Ca_14861_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 6.2e-311 1071.6 713 73.8
SMO239G0001 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 5.7e-307 1058.5 1833 36.3
CBR_g24134 Chara braunii HOM05D004535 ORTHO05D005341 4.9e-274 949.1 1949 32.6
COL.COLO4_07778 Corchorus olitorius HOM05D004535 ORTHO05D005341 8.4e-266 921.8 1171 48.1
Os06g0301300 Oryza sativa ssp. japonica HOM05D004535 ORTHO05D005341 7.6e-259 898.7 692 63.4
Potri.011G167650 Populus trichocarpa HOM05D004535 ORTHO05D005341 2.3e-199 701.0 523 70.9
Actinidia00829 Actinidia chinensis HOM05D004535 ORTHO05D005341 8.3e-181 639.4 636 59.7
QL10p044954 Quercus lobata HOM05D004535 ORTHO05D005341 5.6e-145 520.4 639 48.4
SEGI_13123 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 8.4e-141 506.5 458 54.6
MCO11G531 Micromonas commoda HOM05D004535 ORTHO05D005341 7.9e-123 446.8 1914 25.4
Ca_14860_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 1.6e-120 439.1 339 71.1
VMungo0540G1109 Vigna mungo HOM05D004535 ORTHO05D005341 2.0e-118 432.2 322 65.2
Actinidia00827 Actinidia chinensis HOM05D004535 ORTHO05D005341 1.8e-114 419.1 300 70.0
SEGI_38328 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 1.1e-113 416.4 468 48.3
MD00G1206600 Malus domestica HOM05D004535 ORTHO05D005341 6.7e-106 390.6 220 82.3
VMungo1127G2045 Vigna mungo HOM05D004535 ORTHO05D005341 7.7e-102 377.1 271 70.5
MD00G1206500 Malus domestica HOM05D004535 ORTHO05D005341 1.4e-98 366.3 250 76.8
Actinidia03668 Actinidia chinensis HOM05D004535 ORTHO05D005341 1.3e-85 323.2 226 68.6
PRCOL_00006556 Prasinoderma coloniale HOM05D004535 ORTHO05D005341 4.7e-83 314.7 1921 22.2
SEGI_32129 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 2.6e-81 308.9 362 51.7
Nn1g08306 Nelumbo nucifera HOM05D004535 ORTHO05D005341 5.0e-77 294.7 166 84.9
arahy.Tifrunner.gnm1.ann1.P6R29M Arachis hypogaea HOM05D004535 ORTHO05D005341 2.1e-75 289.3 345 49.0
SEGI_15666 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 5.6e-36 158.3 157 58.0
Cpa.g.sc12.82 Carica papaya HOM05D004535 ORTHO05D005341 7.3e-36 157.9 119 72.3
Actinidia00828 Actinidia chinensis HOM05D004535 ORTHO05D005341 2.1e-35 156.4 210 48.1
Cre14.g628702 Chlamydomonas reinhardtii HOM05D004535 ORTHO05D005341 3.1e-34 152.5 655 24.9
Cfa027001 Carpinus fangiana HOM05D004535 ORTHO05D005341 1.9e-31 143.3 1935 19.8
arahy.Tifrunner.gnm1.ann1.A7P7U5 Arachis hypogaea HOM05D004535 ORTHO05D005341 1.9e-28 133.3 116 66.4
arahy.Tifrunner.gnm1.ann1.6S2B7N Arachis hypogaea HOM05D012221 ORTHO05D005341 2.2e-24 119.8 122 56.6
Lsat_1_v5_gn_0_5420 Lactuca sativa HOM05D004535 ORTHO05D005341 7.1e-23 114.8 74 70.3
PSO541G1144 Papaver somniferum HOM05D004535 ORTHO05D005341 6.0e-22 111.7 76 68.4
Psat5g106440 Pisum sativum HOM05D004535 ORTHO05D005341 1.8e-21 110.2 65 83.1
arahy.Tifrunner.gnm1.ann1.QBA8JR Arachis hypogaea HOM05D004535 ORTHO05D005341 3.9e-21 109.0 163 44.8
arahy.Tifrunner.gnm1.ann1.EHT35G Arachis hypogaea HOM05D004535 ORTHO05D005341 5.6e-20 105.1 116 53.4
Ca_31034_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 6.2e-19 101.7 75 72.0
SEGI_18126 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 1.1e-15 90.9 73 50.7
VMungo1215G1327 Vigna mungo HOM05D004535 ORTHO05D005341 1.4e-15 90.5 72 66.7
PGSC0003DMG402022150 Solanum tuberosum HOM05D004535 ORTHO05D005341 7.1e-15 88.2 96 53.1
arahy.Tifrunner.gnm1.ann1.HQ6FCP Arachis hypogaea HOM05D004535 ORTHO05D005341 1.8e-13 83.6 170 39.4
CSS0045016 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000018 5.3e-10 72.0 68 55.9
VMungo0110G0001 Vigna mungo HOM05D004535 ORTHO05D005341 1.5e-09 70.5 63 49.2
Psat4g112520 Pisum sativum HOM05D004535 ORTHO05D005341 1.3e-08 67.4 45 68.9
Actinidia23168 Actinidia chinensis HOM05D004535 ORTHO05D005341 7.9e-06 58.2 65 50.8


User provided reference genes

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