Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1C863T3 Lonicera japonica HOM05D007317 ORTHO05D009299 2.0e-176 622.5 340 100.0
Dinv22311 Davidia involucrata HOM05D007317 ORTHO05D009299 9.2e-118 427.6 304 74.3
QL08p013454 Quercus lobata HOM05D007317 ORTHO05D009299 1.6e-117 426.8 281 76.2
QL08p013772 Quercus lobata HOM05D007317 ORTHO05D009299 1.6e-117 426.8 281 76.2
Manes.03G122200 Manihot esculenta HOM05D007317 ORTHO05D009299 5.6e-115 418.3 281 75.8
CSS0029394 Camellia sinensis var. sinensis HOM05D007317 ORTHO05D009299 3.6e-114 415.6 333 67.9
Actinidia09959 Actinidia chinensis HOM05D007317 ORTHO05D009299 4.7e-114 415.2 329 69.3
CiPaw.11G183200 Carya illinoinensis HOM05D007317 ORTHO05D009299 1.4e-113 413.7 280 76.1
TAR627G0483 Trochodendron aralioides HOM05D007317 ORTHO05D009299 6.8e-113 411.4 346 65.9
TAR627G0019 Trochodendron aralioides HOM05D007317 ORTHO05D009299 1.5e-112 410.2 345 65.2
CSS0009056 Camellia sinensis var. sinensis HOM05D007317 ORTHO05D009299 2.0e-112 409.8 333 67.0
Potri.011G132500 Populus trichocarpa HOM05D007317 ORTHO05D009299 7.6e-112 407.9 332 66.0
Sabra11G0119300 Salix brachista HOM05D007317 ORTHO05D009299 3.8e-111 405.6 283 72.4
Haze_09595 Corylus avellana HOM05D007317 ORTHO05D009299 4.9e-111 405.2 331 65.9
Cfa020433 Carpinus fangiana HOM05D007317 ORTHO05D009299 6.4e-111 404.8 331 65.9
Thecc.07G054800 Theobroma cacao HOM05D007317 ORTHO05D009299 4.2e-110 402.1 313 68.1
Ciclev10008788m.g Citrus clementina HOM05D007317 ORTHO05D009299 1.2e-109 400.6 282 71.3
Prupe.4G201600 Prunus persica HOM05D007317 ORTHO05D009299 1.6e-109 400.2 344 63.1
Lsat_1_v5_gn_0_6961 Lactuca sativa HOM05D007317 ORTHO05D001968 2.5e-107 392.9 273 77.3
Gorai.002G082000 Gossypium raimondii HOM05D007317 ORTHO05D009299 5.6e-107 391.7 282 70.9
Atru.chr2.3185 Acer truncatum HOM05D007317 ORTHO05D009299 7.3e-107 391.3 341 63.0
Aqoxy4G02123 Aquilegia oxysepala HOM05D007317 ORTHO05D009299 7.3e-107 391.3 280 70.7
Gohir.D01G060600 Gossypium hirsutum HOM05D007317 ORTHO05D009299 9.6e-107 391.0 282 70.9
Hma1.2p1_2644F.1_g325960 Hydrangea macrophylla HOM05D007317 ORTHO05D009299 1.3e-106 390.6 281 72.6
Gohir.A01G074100 Gossypium hirsutum HOM05D007317 ORTHO05D009299 1.6e-106 390.2 282 70.6
HanXRQChr03g0077301 Helianthus annuus HOM05D007317 ORTHO05D009299 1.6e-106 390.2 288 72.2
Nitab4.5_0000749g0020 Nicotiana tabacum HOM05D007317 ORTHO05D009299 2.1e-106 389.8 283 70.3
Atru.chr2.3195 Acer truncatum HOM05D007317 ORTHO05D009299 2.8e-106 389.4 276 71.7
SalBow7G0069 Salvia bowleyana HOM05D007317 ORTHO05D009299 2.8e-106 389.4 346 61.8
RcHm_v2.0_Chr5g0037211 Rosa chinensis HOM05D007317 ORTHO05D009299 3.6e-106 389.0 342 62.3
PGR083G0561 Punica granatum HOM05D007317 ORTHO05D009299 4.8e-106 388.7 282 71.6
Sopen12g001230 Solanum pennellii HOM05D007317 ORTHO05D009299 4.8e-106 388.7 281 71.5
Nn1g03706 Nelumbo nucifera HOM05D007317 ORTHO05D009299 6.2e-106 388.3 343 61.5
TWI38G0523 Tripterygium wilfordii HOM05D007317 ORTHO05D009299 1.4e-105 387.1 283 70.0
Duzib213G1071 Durio zibethinus HOM05D007317 ORTHO05D009299 1.8e-105 386.7 334 64.1
Nitab4.5_0000092g0060 Nicotiana tabacum HOM05D007317 ORTHO05D009299 1.8e-105 386.7 281 70.1
Lj3g0025188 Lotus japonicus HOM05D007317 ORTHO05D009299 2.0e-104 383.3 281 69.4
Solyc12g005240.1 Solanum lycopersicum HOM05D007317 ORTHO05D009299 2.0e-104 383.3 281 71.5
Ca_01757_v3 Cicer arietinum L. HOM05D007317 ORTHO05D009299 5.8e-104 381.7 281 66.2
Ca_01763_v3 Cicer arietinum L. HOM05D007317 ORTHO05D009299 5.8e-104 381.7 281 66.2
Glyma.12G214800 Glycine max HOM05D007317 ORTHO05D009299 5.8e-104 381.7 281 68.3
Peaxi162Scf01097g00014 Petunia axillaris HOM05D007317 ORTHO05D009299 1.7e-103 380.2 280 68.9
Phvul.005G091100 Phaseolus vulgaris HOM05D007317 ORTHO05D009299 1.7e-103 380.2 281 69.0
PGSC0003DMG400021808 Solanum tuberosum HOM05D007317 ORTHO05D009299 3.8e-103 379.0 281 70.1
Glyma.13G286800 Glycine max HOM05D007317 ORTHO05D009299 6.4e-103 378.3 280 68.2
VMungo1080G0023 Vigna mungo HOM05D007317 ORTHO05D009299 1.9e-102 376.7 281 68.0
Lalb_Chr22g0357071 Lupinus albus HOM05D007317 ORTHO05D009299 3.2e-102 375.9 280 67.5
ClCG10G005750 Citrullus lanatus HOM05D007317 ORTHO05D009299 4.2e-102 375.6 282 68.1
TPR.G36790 Trifolium pratense HOM05D007317 ORTHO05D009299 5.4e-102 375.2 280 69.3
Medtr2g082660 Medicago truncatula HOM05D007317 ORTHO05D009299 7.1e-102 374.8 281 67.6
CANSAT11G2557 Cannabis sativa HOM05D007317 ORTHO05D009299 2.1e-101 373.2 339 60.2
FvH4_3g21740 Fragaria vesca HOM05D007317 ORTHO05D009299 2.7e-101 372.9 270 70.0
CAN.G262.21 Capsicum annuum HOM05D007317 ORTHO05D009299 4.6e-101 372.1 272 69.5
AUR62029234 Chenopodium quinoa HOM05D007317 ORTHO05D009299 1.0e-100 370.9 285 67.0
MD11G1227700 Malus domestica HOM05D007317 ORTHO05D009299 1.3e-100 370.5 282 66.3
EL10Ac4g07985 Beta vulgaris HOM05D007317 ORTHO05D009299 1.7e-100 370.2 285 66.3
Ah.06g183090 Amaranthus hybridus HOM05D007317 ORTHO05D009299 3.9e-100 369.0 277 67.5
Migut.H01861 Erythranthe guttata HOM05D007317 ORTHO05D009299 1.5e-99 367.1 267 68.5
MELO3C025426.2 Cucumis melo HOM05D007317 ORTHO05D009299 1.9e-99 366.7 335 58.8
Eucgr.F00996 Eucalyptus grandis HOM05D007317 ORTHO05D009299 3.3e-99 365.9 283 67.8
CsaV3_3G005440 Cucumis sativus L. HOM05D007317 ORTHO05D009299 7.3e-99 364.8 338 58.9
AUR62015637 Chenopodium quinoa HOM05D007317 ORTHO05D009299 9.6e-99 364.4 285 66.0
Sc03g0009140 Simmondsia chinensis HOM05D007317 ORTHO05D009299 1.1e-97 360.9 279 66.7
Psat5g249840 Pisum sativum HOM05D007317 ORTHO05D009299 6.9e-97 358.2 282 65.2
MBI02_g29710_MAGBIO Magnolia biondii HOM05D007317 ORTHO05D009299 2.6e-96 356.3 276 66.7
PSO541G0431 Papaver somniferum HOM05D007317 ORTHO05D009299 9.9e-96 354.4 289 63.3
GSVIVG01014590001 Vitis vinifera HOM05D007317 ORTHO05D009299 3.8e-95 352.4 275 67.3
PSO675G5311 Papaver somniferum HOM05D007317 ORTHO05D009299 8.7e-92 341.3 276 62.7
Thhalv10021080m.g Eutrema salsugineum HOM05D007317 ORTHO05D009299 9.6e-91 337.8 282 64.9
Sp3g18720 Schrenkiella parvula HOM05D007317 ORTHO05D009299 1.6e-90 337.0 282 63.8
BraA01t03516Z Brassica rapa HOM05D007317 ORTHO05D009299 2.8e-90 336.3 285 65.3
A01p34120 Brassica napus HOM05D007317 ORTHO05D009299 3.7e-90 335.9 285 64.9
Hma1.2p1_2644F.1_g325950 Hydrangea macrophylla HOM05D007317 ORTHO05D009299 4.8e-90 335.5 281 65.5
Aa31LG8G7460 Aethionema arabicum HOM05D007317 ORTHO05D009299 8.1e-90 334.7 287 62.4
unitig_578.g16764 Utricularia gibba HOM05D007317 ORTHO05D009299 8.1e-90 334.7 283 60.1
AL3G34590 Arabidopsis lyrata HOM05D007317 ORTHO05D009299 1.1e-89 334.3 281 63.3
BcaB04g20638 Brassica carinata HOM05D007317 ORTHO05D009299 2.4e-89 333.2 286 64.0
BcaC09g49009 Brassica carinata HOM05D007317 ORTHO05D009299 2.4e-89 333.2 285 63.5
AT3G20680 Arabidopsis thaliana HOM05D007317 ORTHO05D009299 6.9e-89 331.6 341 54.8
C01p43540 Brassica napus HOM05D007317 ORTHO05D009299 6.9e-89 331.6 286 64.0
BolC1t04315H Brassica oleracea HOM05D007317 ORTHO05D009299 6.9e-89 331.6 286 64.0
Sed0024877 Sechium edule HOM05D007317 ORTHO05D009299 1.2e-88 330.9 276 62.0
CARHR096490 Cardamine hirsuta HOM05D007317 ORTHO05D009299 1.1e-86 324.3 282 63.5
THA.LOC104825404 Tarenaya hassleriana HOM05D007317 ORTHO05D009299 9.3e-86 321.2 277 62.5
COL.COLO4_09559 Corchorus olitorius HOM05D007317 ORTHO05D009299 8.7e-84 314.7 318 55.3
Carub.0003s2066 Capsella rubella HOM05D007317 ORTHO05D009299 1.2e-80 304.3 282 60.3
SGA_v2.0_scaffold320G48570 Striga asiatica HOM05D007317 ORTHO05D009299 1.4e-78 297.4 269 59.1
Cc05_g13190 Coffea canephora HOM05D007317 ORTHO05D009299 6.7e-76 288.5 204 72.5
ATR0733G181 Amborella trichopoda HOM05D007317 ORTHO05D009299 2.4e-73 280.0 269 51.3
Zm00001eb291900 Zea mays HOM05D007317 ORTHO05D009299 4.7e-61 239.2 285 48.4
Os05g0500400 Oryza sativa ssp. japonica HOM05D007317 ORTHO05D009299 2.2e-58 230.3 282 47.5
Lalb_Chr14g0366071 Lupinus albus HOM05D007317 ORTHO05D009299 2.2e-55 220.3 184 59.8
FAN21G2436 Fragaria x ananassa HOM05D007317 ORTHO05D009299 5.2e-52 209.1 132 76.5
Cpa.g.sc97.77 Carica papaya HOM05D007317 ORTHO05D009299 6.3e-50 202.2 168 63.7
SEGI_21971 Sequoiadendron giganteum HOM05D007317 ORTHO05D009299 1.2e-48 198.0 266 39.8
PGSC0003DMG400016049 Solanum tuberosum HOM05D007317 ORTHO05D009299 2.6e-48 196.8 120 76.7
Pp3c9_12310 Physcomitrium patens HOM05D007317 ORTHO05D009299 3.1e-33 146.7 278 32.4
BolC3t18840H Brassica oleracea HOM05D007317 ORTHO05D009299 7.0e-33 145.6 252 43.7
Dinv32111 Davidia involucrata HOM05D007317 ORTHO05D009299 2.0e-32 144.1 114 65.8
BcaC01g02387 Brassica carinata HOM05D007317 ORTHO05D009299 4.3e-30 136.3 193 48.2
Mapoly0015s0049 Marchantia polymorpha HOM05D007317 ORTHO05D009299 2.8e-29 133.7 264 33.0
BcaC09g49010 Brassica carinata HOM05D007317 ORTHO05D009299 2.3e-28 130.6 135 51.1
MD03G1212500 Malus domestica HOM05D007317 ORTHO05D009299 1.1e-25 121.7 126 53.2
CBR_g22430 Chara braunii HOM05D006038 ORTHO05D007547 2.3e-20 104.0 260 31.2
MCO11G003 Micromonas commoda HOM05D007317 ORTHO05D009299 1.1e-17 95.1 275 31.6
BcaB02g11442 Brassica carinata HOM05D007317 ORTHO05D009299 1.8e-12 77.8 107 40.2
Cre08.g369000 Chlamydomonas reinhardtii HOM05D007317 ORTHO05D009299 4.4e-11 73.2 298 27.9


User provided reference genes

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