Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1C842T3 Lonicera japonica HOM05D002373 ORTHO05D008661 3.3e-170 601.7 311 100.0
HanXRQChr12g0364201 Helianthus annuus HOM05D002373 ORTHO05D008661 9.6e-122 440.7 310 73.2
CSS0006904 Camellia sinensis var. sinensis HOM05D002373 ORTHO05D008661 2.1e-121 439.5 330 69.1
Actinidia35249 Actinidia chinensis HOM05D002373 ORTHO05D008661 1.7e-118 429.9 324 69.4
CSS0005109 Camellia sinensis var. sinensis HOM05D002373 ORTHO05D008661 4.9e-118 428.3 331 68.6
ECA240G3063 Erigeron canadensis HOM05D002373 ORTHO05D008661 1.1e-117 427.2 277 78.3
Dinv20179 Davidia involucrata HOM05D002373 ORTHO05D008661 7.1e-117 424.5 335 67.2
Thecc.07G090300 Theobroma cacao HOM05D002373 ORTHO05D008661 7.1e-117 424.5 322 68.9
Lsat_1_v5_gn_9_97941 Lactuca sativa HOM05D002373 ORTHO05D008661 9.3e-117 424.1 315 71.7
DCAR_019560 Daucus carota HOM05D002373 ORTHO05D008661 1.6e-116 423.3 288 75.3
GSVIVG01014327001 Vitis vinifera HOM05D002373 ORTHO05D008661 7.9e-116 421.0 324 67.9
CAN.G213.9 Capsicum annuum HOM05D002373 ORTHO05D008661 1.8e-115 419.9 325 68.9
Solyc12g013870.3 Solanum lycopersicum HOM05D002373 ORTHO05D008661 2.3e-115 419.5 330 67.6
Ciclev10008924m.g Citrus clementina HOM05D002373 ORTHO05D008661 6.7e-115 417.9 325 67.1
Gohir.D13G151000 Gossypium hirsutum HOM05D002373 ORTHO05D008661 1.1e-114 417.2 322 67.1
Migut.H01944 Erythranthe guttata HOM05D002373 ORTHO05D008661 5.7e-114 414.8 329 66.3
MD11G1252400 Malus domestica HOM05D002373 ORTHO05D008661 2.2e-113 412.9 323 65.9
RcHm_v2.0_Chr5g0033281 Rosa chinensis HOM05D002373 ORTHO05D008661 2.2e-113 412.9 323 64.7
BcaB02g10929 Brassica carinata HOM05D002373 ORTHO05D005805 8.2e-113 411.0 305 69.8
COL.COLO4_27178 Corchorus olitorius HOM05D002373 ORTHO05D008661 3.1e-112 409.1 321 67.0
PGSC0003DMG400015321 Solanum tuberosum HOM05D002373 ORTHO05D008661 4.1e-112 408.7 323 68.1
Eucgr.F01146 Eucalyptus grandis HOM05D002373 ORTHO05D008661 6.9e-112 407.9 319 65.8
Prupe.4G180500 Prunus persica HOM05D002373 ORTHO05D008661 6.9e-112 407.9 322 64.9
Gohir.A13G146100 Gossypium hirsutum HOM05D002373 ORTHO05D008661 9.0e-112 407.5 322 65.5
Sopen12g007190 Solanum pennellii HOM05D002373 ORTHO05D008661 9.0e-112 407.5 322 67.7
MSTRG.12905 Avicennia marina HOM05D002373 ORTHO05D008661 2.0e-111 406.4 329 66.0
BcaC08g44045 Brassica carinata HOM05D002373 ORTHO05D008661 2.0e-111 406.4 322 66.5
Sp1g39670 Schrenkiella parvula HOM05D002373 ORTHO05D008661 2.0e-111 406.4 282 71.3
FvH4_3g19840 Fragaria vesca HOM05D002373 ORTHO05D008661 2.6e-111 406.0 322 65.2
CANSAT56G3654 Cannabis sativa HOM05D002373 ORTHO05D008661 3.4e-111 405.6 325 66.5
A05p18620 Brassica napus HOM05D002373 ORTHO05D008661 7.7e-111 404.4 319 67.4
BolC6t36626H Brassica oleracea HOM05D002373 ORTHO05D008661 7.7e-111 404.4 322 66.1
Thhalv10011660m.g Eutrema salsugineum HOM05D002373 ORTHO05D008661 7.7e-111 404.4 285 70.9
TAR624G1149 Trochodendron aralioides HOM05D002373 ORTHO05D008661 1.0e-110 404.1 321 67.0
C06p14460 Brassica napus HOM05D002373 ORTHO05D008661 2.2e-110 402.9 322 65.8
BraA05t20753Z Brassica rapa HOM05D002373 ORTHO05D008661 2.9e-110 402.5 279 71.7
arahy.Tifrunner.gnm1.ann1.CVL1T8 Arachis hypogaea HOM05D002373 ORTHO05D008661 3.8e-110 402.1 303 67.0
arahy.Tifrunner.gnm1.ann1.D1WMTZ Arachis hypogaea HOM05D002373 ORTHO05D008661 6.5e-110 401.4 303 67.0
CARHR043340 Cardamine hirsuta HOM05D002373 ORTHO05D008661 1.1e-109 400.6 332 63.9
FAN11G3740 Fragaria x ananassa HOM05D002373 ORTHO05D008661 1.4e-109 400.2 322 64.6
THA.LOC104810464 Tarenaya hassleriana HOM05D002373 ORTHO05D008661 4.2e-109 398.7 322 64.6
SGA_v2.0_scaffold70G23676 Striga asiatica HOM05D002373 ORTHO05D008661 7.2e-109 397.9 343 62.7
Nn1g04122 Nelumbo nucifera HOM05D002373 ORTHO05D008661 1.6e-108 396.7 313 67.4
Nitab4.5_0009292g0020 Nicotiana tabacum HOM05D002373 ORTHO05D008661 1.6e-108 396.7 306 69.0
AL1G61480 Arabidopsis lyrata HOM05D002373 ORTHO05D008661 2.7e-108 396.0 321 65.7
Peaxi162Scf00000g03511 Petunia axillaris HOM05D002373 ORTHO05D008661 2.7e-108 396.0 304 68.1
AT1G53120 Arabidopsis thaliana HOM05D002373 ORTHO05D008661 6.1e-108 394.8 278 71.2
Cpa.g.sc80.70 Carica papaya HOM05D002373 ORTHO05D008661 6.1e-108 394.8 323 65.0
Cfa020577 Carpinus fangiana HOM05D002373 ORTHO05D008661 6.1e-108 394.8 294 66.3
FAN25G2634 Fragaria x ananassa HOM05D002373 ORTHO05D008661 1.0e-107 394.0 319 64.3
Potri.011G119800 Populus trichocarpa HOM05D002373 ORTHO05D008661 2.3e-107 392.9 285 70.2
Aa31LG10G2010 Aethionema arabicum HOM05D002373 ORTHO05D008661 5.1e-107 391.7 274 70.8
vmacro09529 Vaccinium macrocarpon HOM05D002373 ORTHO05D008661 1.5e-106 390.2 362 61.0
Carub.0001s4228 Capsella rubella HOM05D002373 ORTHO05D008661 2.0e-106 389.8 321 63.9
Sabra11G0104200 Salix brachista HOM05D002373 ORTHO05D008661 2.0e-106 389.8 270 71.1
CsaV3_3G019460 Cucumis sativus L. HOM05D002373 ORTHO05D008661 3.3e-106 389.0 323 64.7
Lalb_Chr25g0286331 Lupinus albus HOM05D002373 ORTHO05D008661 3.3e-106 389.0 320 63.4
Glyma.12G224900 Glycine max HOM05D002373 ORTHO05D008661 5.7e-106 388.3 276 68.5
Phvul.002G286700 Phaseolus vulgaris HOM05D002373 ORTHO05D008661 1.3e-105 387.1 322 62.7
MELO3C019408.2 Cucumis melo HOM05D002373 ORTHO05D008661 2.2e-105 386.3 307 65.5
CiPaw.11G170200 Carya illinoinensis HOM05D002373 ORTHO05D008661 2.8e-105 386.0 321 62.6
Sed0026190 Sechium edule HOM05D002373 ORTHO05D008661 6.3e-105 384.8 278 69.1
VMungo1080G1315 Vigna mungo HOM05D002373 ORTHO05D008661 6.3e-105 384.8 321 62.3
Atru.BG.257.p Acer truncatum HOM05D002373 ORTHO05D008661 8.2e-105 384.4 254 73.6
Lj3g0019501 Lotus japonicus HOM05D002373 ORTHO05D008661 1.4e-104 383.6 276 68.5
QL08p022081 Quercus lobata HOM05D002373 ORTHO05D008661 1.4e-104 383.6 329 60.2
Medtr2g085340 Medicago truncatula HOM05D002373 ORTHO05D008661 2.4e-104 382.9 276 67.8
Atru.BG.152.p Acer truncatum HOM05D002373 ORTHO05D008661 4.1e-104 382.1 254 73.2
TPR.G39017 Trifolium pratense HOM05D002373 ORTHO05D008661 1.2e-103 380.6 278 67.6
Psat5g243920 Pisum sativum HOM05D002373 ORTHO05D008661 2.6e-103 379.4 276 67.0
MBI06_g23077_MAGBIO Magnolia biondii HOM05D002373 ORTHO05D008661 5.9e-103 378.3 286 67.1
Aqoxy1G02390 Aquilegia oxysepala HOM05D002373 ORTHO05D008661 7.7e-103 377.9 277 68.6
Ca_03504_v3 Cicer arietinum L. HOM05D002373 ORTHO05D008661 7.7e-103 377.9 276 67.8
PGR083G2563 Punica granatum HOM05D002373 ORTHO05D008661 1.0e-102 377.5 295 64.1
ClCG05G009320 Citrullus lanatus HOM05D002373 ORTHO05D008661 1.4e-101 373.6 332 60.2
EL10Ac4g08187 Beta vulgaris HOM05D002373 ORTHO05D008661 2.7e-100 369.4 287 65.9
Haze_09434 Corylus avellana HOM05D002373 ORTHO05D008661 2.6e-98 362.8 281 63.3
AUR62019433 Chenopodium quinoa HOM05D002373 ORTHO05D008661 4.4e-98 362.1 307 61.9
Ah.06g184370 Amaranthus hybridus HOM05D002373 ORTHO05D008661 1.7e-97 360.1 270 66.3
Manes.03G109500 Manihot esculenta HOM05D002373 ORTHO05D008661 3.7e-97 359.0 237 74.7
Hund20000 Selenicereus undatus HOM05D002373 ORTHO05D008661 4.8e-97 358.6 323 61.0
AUR62039201 Chenopodium quinoa HOM05D002373 ORTHO05D008661 2.4e-96 356.3 307 62.2
Nitab4.5_0000332g0080 Nicotiana tabacum HOM05D002373 ORTHO05D008661 4.5e-95 352.1 306 63.1
Os01g0747700 Oryza sativa ssp. japonica HOM05D002373 ORTHO05D008661 4.5e-95 352.1 273 63.4
TWI38G1988 Tripterygium wilfordii HOM05D002373 ORTHO05D008661 2.2e-94 349.7 232 75.0
Zm00001eb153060 Zea mays HOM05D002373 ORTHO05D008661 5.0e-94 348.6 264 64.4
FAN16G2188 Fragaria x ananassa HOM05D002373 ORTHO05D008661 6.7e-91 338.2 236 68.6
ATR0737G132 Amborella trichopoda HOM05D002373 ORTHO05D008661 5.7e-90 335.1 274 61.7
CDE02G2303 Ceratophyllum demersum HOM05D002373 ORTHO05D008661 1.3e-89 334.0 234 68.8
Phvul.005G072600 Phaseolus vulgaris HOM05D002373 ORTHO05D008661 2.2e-89 333.2 237 70.0
HPP92_024439 Vanilla planifolia HOM05D002373 ORTHO05D008661 4.8e-89 332.0 250 64.0
Rhsim04G0021500 Rhododendron simsii HOM05D002373 ORTHO05D008661 8.2e-89 331.3 273 65.9
unitig_26.g9527 Utricularia gibba HOM05D002373 ORTHO05D008661 1.8e-88 330.1 270 62.6
Sc03g0010080 Simmondsia chinensis HOM05D002373 ORTHO05D008661 5.3e-88 328.6 270 62.6
PSO541G6350 Papaver somniferum HOM05D002373 ORTHO05D008661 2.2e-86 323.2 256 65.2
Oeu060559.2 Olea europaea HOM05D002373 ORTHO05D008661 4.2e-85 318.9 381 49.9
Gorai.013G170800 Gossypium raimondii HOM05D002373 ORTHO05D008661 1.0e-83 314.3 212 72.2
FAN21G4050 Fragaria x ananassa HOM05D002373 ORTHO05D008661 4.8e-81 305.4 212 68.4
Gorai.013G169000 Gossypium raimondii HOM05D002373 ORTHO05D008661 4.9e-73 278.9 219 65.8
Pp3c20_21790 Physcomitrium patens HOM05D002373 ORTHO05D008661 7.7e-71 271.6 280 51.1
Glyma.13G276400 Glycine max HOM05D002373 ORTHO05D008661 8.0e-68 261.5 248 57.7
AagrBONN_evm.TU.Sc2ySwM_344.3401 Anthoceros agrestis HOM05D002373 ORTHO05D008661 1.4e-64 250.8 280 45.7
Mapoly0051s0038 Marchantia polymorpha HOM05D002373 ORTHO05D008661 1.3e-62 244.2 286 46.9
SMO367G1013 Selaginella moellendorffii HOM05D002373 ORTHO05D008661 4.3e-61 239.2 243 53.1
Cre12.g502950 Chlamydomonas reinhardtii HOM05D002373 ORTHO05D008661 6.4e-57 225.3 250 49.2
CDE08G0691 Ceratophyllum demersum HOM05D002373 ORTHO05D008661 9.8e-50 201.4 148 64.9
CSS0025404 Camellia sinensis var. sinensis HOM05D002373 ORTHO05D008661 1.4e-48 197.6 129 72.1
MCO14G219 Micromonas commoda HOM05D002373 ORTHO05D008661 3.5e-47 193.0 315 41.6
Thecc.07G090900 Theobroma cacao HOM05D002373 ORTHO05D008661 8.6e-38 161.8 105 73.3
Gohir.D13G152082 Gossypium hirsutum HOM05D002373 ORTHO05D008661 1.4e-24 117.9 88 68.2
Gorai.013G170900 Gossypium raimondii HOM05D002373 ORTHO05D008661 2.7e-23 113.6 88 65.9
Gohir.A13G147066 Gossypium hirsutum HOM05D002373 ORTHO05D008661 4.0e-19 99.8 81 61.7
CSS0007754 Camellia sinensis var. sinensis HOM05D002373 ORTHO05D008661 4.5e-18 96.3 65 66.2
CSS0007182 Camellia sinensis var. sinensis HOM05D002373 ORTHO05D008661 1.7e-17 94.4 64 67.2
A01p26780 Brassica napus HOM05D002373 ORTHO05D008661 9.6e-13 78.6 76 55.3
PRCOL_00005720 Prasinoderma coloniale HOM05D002373 ORTHO05D008661 1.4e-11 74.7 261 28.0
BcaC05g28656 Brassica carinata HOM05D022203 ORTHO05D024331 7.1e-08 62.4 36 77.8
Atru.chr2.2601 Acer truncatum HOM05D002373 ORTHO05D013107 1.0e-06 58.5 56 55.4


User provided reference genes

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