Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1C840T8 Lonicera japonica HOM05D005295 ORTHO05D005962 4.8e-79 297.7 147 100.0
Dinv14935 Davidia involucrata HOM05D005295 ORTHO05D005962 1.8e-54 216.1 158 69.0
CSS0001236 Camellia sinensis var. sinensis HOM05D005295 ORTHO05D005962 1.8e-41 172.9 133 68.4
Nitab4.5_0000332g0010 Nicotiana tabacum HOM05D005295 ORTHO05D005962 8.2e-39 164.1 142 60.6
Actinidia12794 Actinidia chinensis HOM05D005295 ORTHO05D005962 1.4e-38 163.3 124 68.5
Rhsim06G0201600 Rhododendron simsii HOM05D005295 ORTHO05D005962 5.3e-38 161.4 128 64.1
PGSC0003DMG400015366 Solanum tuberosum HOM05D005295 ORTHO05D005962 2.0e-37 159.5 134 63.4
SalBow8G4458 Salvia bowleyana HOM05D005295 ORTHO05D005962 2.6e-37 159.1 126 64.3
Lsat_1_v5_gn_5_128440 Lactuca sativa HOM05D005295 ORTHO05D005962 4.5e-37 158.3 134 60.4
Oeu019302.2 Olea europaea HOM05D005295 ORTHO05D005962 5.9e-37 157.9 129 65.1
Solyc12g013910.2 Solanum lycopersicum HOM05D005295 ORTHO05D005962 5.9e-37 157.9 134 62.7
Sopen12g005670 Solanum pennellii HOM05D005295 ORTHO05D005962 5.9e-37 157.9 134 62.7
Peaxi162Scf00000g00314 Petunia axillaris HOM05D005295 ORTHO05D005962 7.7e-37 157.5 135 62.2
GSVIVG01014296001 Vitis vinifera HOM05D005295 ORTHO05D005962 1.0e-36 157.1 125 61.6
MELO3C025603.2 Cucumis melo HOM05D005295 ORTHO05D005962 2.2e-36 156.0 127 63.0
CsaV3_4G033520 Cucumis sativus L. HOM05D005295 ORTHO05D005962 5.0e-36 154.8 128 63.3
MSTRG.6822 Avicennia marina HOM05D005295 ORTHO05D005962 8.5e-36 154.1 134 60.4
Cc05_g11790 Coffea canephora HOM05D005295 ORTHO05D005962 1.1e-35 153.7 135 60.7
Lj8A154T78 Lonicera japonica HOM05D005295 ORTHO05D005962 1.1e-35 153.7 125 62.4
Migut.M00784 Erythranthe guttata HOM05D005295 ORTHO05D005962 2.5e-35 152.5 131 61.1
CANSAT56G1083 Cannabis sativa HOM05D005295 ORTHO05D005962 3.2e-35 152.1 133 60.9
HanXRQChr12g0361161 Helianthus annuus HOM05D005295 ORTHO05D005962 4.2e-35 151.8 134 56.0
Hma1.2p1_0387F.1_g141920 Hydrangea macrophylla HOM05D005295 ORTHO05D005962 7.2e-35 151.0 125 64.0
Sed0001385 Sechium edule HOM05D005295 ORTHO05D005962 1.2e-34 150.2 127 61.4
Aqoxy1G02337 Aquilegia oxysepala HOM05D005295 ORTHO05D005962 4.7e-34 148.3 125 60.0
SGA_v2.0_scaffold34G13800 Striga asiatica HOM05D005295 ORTHO05D005962 4.7e-34 148.3 125 62.4
ClCG11G017890 Citrullus lanatus HOM05D005295 ORTHO05D005962 6.1e-34 147.9 129 60.5
Lalb_Chr20g0109501 Lupinus albus HOM05D005295 ORTHO05D005962 6.1e-34 147.9 125 60.8
Nn1g04175 Nelumbo nucifera HOM05D005295 ORTHO05D005962 1.0e-33 147.1 137 57.7
TWI38G0013 Tripterygium wilfordii HOM05D005295 ORTHO05D005962 1.8e-33 146.4 130 60.8
CiPaw.11G171800 Carya illinoinensis HOM05D005295 ORTHO05D005962 6.7e-33 144.4 125 58.4
Medtr2g078650 Medicago truncatula HOM05D005295 ORTHO05D005962 1.2e-32 143.7 128 60.2
SGA_v2.0_scaffold73G24237 Striga asiatica HOM05D005295 ORTHO05D005962 1.5e-32 143.3 125 59.2
ECA234G3281 Erigeron canadensis HOM05D005295 ORTHO05D005962 2.6e-32 142.5 131 57.3
DCAR_013119 Daucus carota HOM05D005295 ORTHO05D005962 7.5e-32 141.0 125 57.6
TWI39G0015 Tripterygium wilfordii HOM05D005295 ORTHO05D005962 1.3e-31 140.2 126 57.9
unitig_0.g1149 Utricularia gibba HOM05D005295 ORTHO05D005962 1.3e-31 140.2 131 56.5
VMungo1080G0752 Vigna mungo HOM05D005295 ORTHO05D005962 1.7e-31 139.8 125 59.2
PSO675G2991 Papaver somniferum HOM05D005295 ORTHO05D005962 2.2e-31 139.4 144 53.5
Lj3g0021836 Lotus japonicus HOM05D005295 ORTHO05D005962 2.8e-31 139.0 125 59.2
Eucgr.F01159 Eucalyptus grandis HOM05D005295 ORTHO05D005962 3.7e-31 138.7 125 56.8
Psat0s1402g0040 Pisum sativum HOM05D005295 ORTHO05D005962 4.8e-31 138.3 128 57.0
Thecc.07G095500 Theobroma cacao HOM05D005295 ORTHO05D005962 1.4e-30 136.7 128 56.2
CAN.G213.18 Capsicum annuum HOM05D005295 ORTHO05D005962 1.8e-30 136.3 137 54.0
PGR083G0729 Punica granatum HOM05D005295 ORTHO05D005962 4.1e-30 135.2 125 54.4
Gohir.A04G035200 Gossypium hirsutum HOM05D005295 ORTHO05D005962 5.3e-30 134.8 128 54.7
MD03G1231400 Malus domestica HOM05D005295 ORTHO05D005962 1.2e-29 133.7 125 60.0
Aa31LG5G9970 Aethionema arabicum HOM05D005295 ORTHO05D005962 1.6e-29 133.3 125 56.8
COL.COLO4_36711 Corchorus olitorius HOM05D005295 ORTHO05D005962 1.6e-29 133.3 128 56.2
Haze_09452 Corylus avellana HOM05D005295 ORTHO05D005962 2.0e-29 132.9 125 56.0
MBI02_g22345_MAGBIO Magnolia biondii HOM05D005295 ORTHO05D005962 2.0e-29 132.9 135 50.4
arahy.Tifrunner.gnm1.ann1.B1NQ7W Arachis hypogaea HOM05D005295 ORTHO05D005962 2.7e-29 132.5 126 56.3
Gohir.D05G348200 Gossypium hirsutum HOM05D005295 ORTHO05D005962 2.7e-29 132.5 128 53.9
Gorai.009G376000 Gossypium raimondii HOM05D005295 ORTHO05D005962 2.7e-29 132.5 128 53.9
Phvul.005G075000 Phaseolus vulgaris HOM05D005295 ORTHO05D005962 2.7e-29 132.5 125 56.8
Sabra16G0260000 Salix brachista HOM05D005295 ORTHO05D005962 4.5e-29 131.7 125 56.0
arahy.Tifrunner.gnm1.ann1.3CLR9I Arachis hypogaea HOM05D005295 ORTHO05D005962 5.9e-29 131.3 126 55.6
Eucgr.F01198 Eucalyptus grandis HOM05D005295 ORTHO05D005962 5.9e-29 131.3 125 56.8
Ah.06g184530 Amaranthus hybridus HOM05D005295 ORTHO05D005962 7.7e-29 131.0 143 49.7
Glyma.13G273800 Glycine max HOM05D005295 ORTHO05D005962 7.7e-29 131.0 125 54.4
THA.LOC104811877 Tarenaya hassleriana HOM05D005295 ORTHO05D005962 1.0e-28 130.6 125 55.2
Duzib213G0204 Durio zibethinus HOM05D005295 ORTHO05D005962 2.2e-28 129.4 126 57.1
Manes.03G106500 Manihot esculenta HOM05D005295 ORTHO05D005962 2.2e-28 129.4 126 58.7
Cfa020562 Carpinus fangiana HOM05D005295 ORTHO05D005962 6.5e-28 127.9 125 54.4
Ca_03531_v3 Cicer arietinum L. HOM05D005295 ORTHO05D005962 8.5e-28 127.5 125 55.2
Cpa.g.sc622.2 Carica papaya HOM05D005295 ORTHO05D005962 1.9e-27 126.3 125 52.0
Prupe.4G176600 Prunus persica HOM05D005295 ORTHO05D005962 1.9e-27 126.3 125 56.8
Sc16g0007150 Simmondsia chinensis HOM05D005295 ORTHO05D005962 2.5e-27 125.9 133 50.4
Thhalv10026112m.g Eutrema salsugineum HOM05D005295 ORTHO05D005962 5.5e-27 124.8 132 51.5
CDE05G1939 Ceratophyllum demersum HOM05D005295 ORTHO05D005962 1.6e-26 123.2 124 53.2
Potri.011G116200 Populus trichocarpa HOM05D005295 ORTHO05D005962 1.6e-26 123.2 125 54.4
QL08p022700 Quercus lobata HOM05D005295 ORTHO05D005962 1.6e-26 123.2 125 53.6
CARHR235220 Cardamine hirsuta HOM05D005295 ORTHO05D005962 2.1e-26 122.9 133 51.1
Sp7g25480 Schrenkiella parvula HOM05D005295 ORTHO05D005962 2.1e-26 122.9 132 51.5
Carub.0007s1331 Capsella rubella HOM05D005295 ORTHO05D005962 2.7e-26 122.5 129 51.9
CDE05G3097 Ceratophyllum demersum HOM05D006331 ORTHO05D008043 4.7e-26 121.7 124 52.4
Potri.001G396900 Populus trichocarpa HOM05D005295 ORTHO05D005962 4.7e-26 121.7 125 52.8
AL7G25230 Arabidopsis lyrata HOM05D005295 ORTHO05D005962 8.0e-26 120.9 132 50.8
BcaNung06688 Brassica carinata HOM05D005295 ORTHO05D005962 1.0e-25 120.6 134 49.3
Atru.chr2.2424 Acer truncatum HOM05D005295 ORTHO05D005962 1.8e-25 119.8 122 51.6
BcaNung06687 Brassica carinata HOM05D005295 ORTHO05D005962 1.8e-25 119.8 133 48.9
C01p23710 Brassica napus HOM05D005295 ORTHO05D005962 1.8e-25 119.8 133 48.9
AT4G27540 Arabidopsis thaliana HOM05D005295 ORTHO05D005962 2.3e-25 119.4 132 50.8
MD06G1175000 Malus domestica HOM05D005295 ORTHO05D005962 3.0e-25 119.0 117 57.3
BraA01t01821Z Brassica rapa HOM05D005295 ORTHO05D005962 5.2e-25 118.2 125 48.0
BolC1t02323H Brassica oleracea HOM05D005295 ORTHO05D005962 6.8e-25 117.9 133 48.1
Sabra11G0101800 Salix brachista HOM05D005295 ORTHO05D005962 6.8e-25 117.9 125 52.8
HPP92_003730 Vanilla planifolia HOM05D005295 ORTHO05D005962 6.8e-25 117.9 138 47.8
A01p18770 Brassica napus HOM05D005295 ORTHO05D005962 8.8e-25 117.5 134 48.5
Ciclev10009383m.g Citrus clementina HOM05D005295 ORTHO05D005962 8.8e-25 117.5 124 50.8
Dinv12314 Davidia involucrata HOM05D005295 ORTHO05D005962 2.0e-24 116.3 130 52.3
EL10Ac4g08225 Beta vulgaris HOM05D005295 ORTHO05D005962 3.4e-24 115.5 140 47.1
Ciclev10009380m.g Citrus clementina HOM05D005295 ORTHO05D005962 9.8e-24 114.0 124 49.2
TPR.G7946 Trifolium pratense HOM05D005295 ORTHO05D005962 1.4e-22 110.2 125 51.2
RcHm_v2.0_Chr5g0032761 Rosa chinensis HOM05D005295 ORTHO05D005962 9.1e-22 107.5 126 49.2
AUR62019458 Chenopodium quinoa HOM05D005295 ORTHO05D005962 1.6e-21 106.7 145 44.1
FAN11G0135 Fragaria x ananassa HOM05D005295 ORTHO05D005962 3.5e-21 105.5 125 48.8
Hund22882 Selenicereus undatus HOM05D005295 ORTHO05D005962 5.9e-21 104.8 143 42.0
AUR62036172 Chenopodium quinoa HOM05D005295 ORTHO05D005962 1.0e-20 104.0 147 44.2
vmacro11885 Vaccinium macrocarpon HOM05D005295 ORTHO05D005962 1.3e-20 103.6 119 50.4
FvH4_3g19520 Fragaria vesca HOM05D005295 ORTHO05D005962 1.7e-20 103.2 125 47.2
Zm00001eb231100 Zea mays HOM05D005295 ORTHO05D005962 1.7e-20 103.2 126 43.7
FAN21G0215 Fragaria x ananassa HOM05D005295 ORTHO05D005962 2.9e-20 102.4 130 47.7
FAN25G2205 Fragaria x ananassa HOM05D005295 ORTHO05D005962 3.8e-20 102.1 130 47.7
Ciclev10010240m.g Citrus clementina HOM05D005295 ORTHO05D005962 1.1e-19 100.5 124 45.2
BolC2t07912H Brassica oleracea HOM05D005295 ORTHO05D005962 4.7e-18 95.1 125 42.4
BcaB05g22086 Brassica carinata HOM05D005295 ORTHO05D005962 1.8e-17 93.2 125 41.6
BcaC03g14369 Brassica carinata HOM05D005295 ORTHO05D005962 2.3e-17 92.8 125 41.6
ATR0150G019 Amborella trichopoda HOM05D005295 ORTHO05D005962 5.7e-16 88.2 129 42.6
BcaC03g14372 Brassica carinata HOM05D005295 ORTHO05D005962 6.3e-15 84.7 125 40.8
BolC2t07916H Brassica oleracea HOM05D005295 ORTHO05D005962 6.3e-15 84.7 125 40.8
Os09g0134400 Oryza sativa ssp. japonica HOM05D005295 ORTHO05D005962 1.1e-14 84.0 128 37.5
C02p17850 Brassica napus HOM05D005295 ORTHO05D005962 2.4e-14 82.8 125 40.0
Cc11_g09910 Coffea canephora HOM05D005295 ORTHO05D005962 7.3e-11 71.2 38 84.2
SEGI_06803 Sequoiadendron giganteum HOM05D005295 ORTHO05D005962 1.6e-10 70.1 125 35.2
Mapoly0124s0020 Marchantia polymorpha HOM05D005295 ORTHO05D005962 2.8e-10 69.3 129 33.3
Pp3c9_10810 Physcomitrium patens HOM05D005295 ORTHO05D005962 1.0e-09 67.4 129 35.7
SMO285G0011 Selaginella moellendorffii HOM05D005295 ORTHO05D005962 1.8e-09 66.6 127 31.5
BcaB06g26783 Brassica carinata HOM05D005295 ORTHO05D005962 6.8e-09 64.7 73 49.3
C02p17830 Brassica napus HOM05D005295 ORTHO05D005962 6.8e-09 64.7 84 41.7
Thhalv10015755m.g Eutrema salsugineum HOM05D005295 ORTHO05D005962 8.9e-09 64.3 88 42.0
Duzib268G1416 Durio zibethinus HOM05D005295 ORTHO05D005962 3.4e-08 62.4 90 44.4
A02p10710 Brassica napus HOM05D005295 ORTHO05D005962 1.7e-07 60.1 88 40.9
BcaB05g22088 Brassica carinata HOM05D005295 ORTHO05D005962 4.9e-07 58.5 93 40.9
BraA02t06134Z Brassica rapa HOM05D005295 ORTHO05D005962 4.9e-07 58.5 86 40.7
AL1G49440 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 1.1e-06 57.4 35 71.4
AL4G33490 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 1.1e-06 57.4 35 71.4
AL6G44190 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 1.1e-06 57.4 35 71.4
AL6G51010 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 1.1e-06 57.4 35 71.4
AL7G20040 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 1.1e-06 57.4 35 71.4
BcaB05g22090 Brassica carinata HOM05D005295 ORTHO05D005962 1.4e-06 57.0 54 51.9
Carub.0001s2750 Capsella rubella HOM05D005295 ORTHO05D005962 1.4e-06 57.0 64 45.3
AL3G43900 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 3.2e-06 55.8 35 68.6


User provided reference genes

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