Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1C824T4 Lonicera japonica HOM05D006003 ORTHO05D007388 6.0e-166 587.4 294 100.0
Hma1.2p1_0050F.1_g028770 Hydrangea macrophylla HOM05D006003 ORTHO05D007388 5.0e-120 434.9 281 77.2
Actinidia12605 Actinidia chinensis HOM05D006003 ORTHO05D007388 6.5e-120 434.5 281 78.3
CSS0003385 Camellia sinensis var. sinensis HOM05D006003 ORTHO05D007388 2.7e-118 429.1 281 76.9
Dinv13362 Davidia involucrata HOM05D006003 ORTHO05D007388 4.7e-118 428.3 281 76.9
CSS0022288 Camellia sinensis var. sinensis HOM05D006003 ORTHO05D007388 3.0e-117 425.6 281 76.2
CAN.G375.51 Capsicum annuum HOM05D006003 ORTHO05D007388 8.8e-117 424.1 281 74.4
vmacro11973 Vaccinium macrocarpon HOM05D006003 ORTHO05D007388 3.4e-116 422.2 280 75.7
DCAR_019616 Daucus carota HOM05D006003 ORTHO05D007388 4.4e-116 421.8 284 71.8
Atru.chr2.1938 Acer truncatum HOM05D006003 ORTHO05D007388 3.7e-115 418.7 281 73.3
Rhsim06G0211900 Rhododendron simsii HOM05D006003 ORTHO05D007388 6.3e-115 417.9 281 73.7
Atru.chr2.1967 Acer truncatum HOM05D006003 ORTHO05D007388 8.3e-115 417.5 281 73.0
Lj8A146G66 Lonicera japonica HOM05D006003 ORTHO05D007388 7.0e-114 414.5 302 70.9
Nitab4.5_0003230g0040 Nicotiana tabacum HOM05D006003 ORTHO05D007388 9.1e-114 414.1 281 73.3
Ciclev10021233m.g Citrus clementina HOM05D006003 ORTHO05D007388 2.0e-113 412.9 280 71.8
PGSC0003DMG400007060 Solanum tuberosum HOM05D006003 ORTHO05D007388 2.2e-112 409.5 281 71.5
Peaxi162Scf00111g01321 Petunia axillaris HOM05D006003 ORTHO05D007388 4.2e-111 405.2 281 71.9
TAR624G1186 Trochodendron aralioides HOM05D006003 ORTHO05D007388 1.2e-110 403.7 280 70.7
Solyc07g062150.3 Solanum lycopersicum HOM05D006003 ORTHO05D007388 3.6e-110 402.1 281 70.8
Nitab4.5_0000347g0030 Nicotiana tabacum HOM05D006003 ORTHO05D007388 6.1e-110 401.4 272 73.9
Thecc.07G133000 Theobroma cacao HOM05D006003 ORTHO05D007388 8.0e-110 401.0 281 68.7
GSVIVG01014095001 Vitis vinifera HOM05D006003 ORTHO05D007388 1.4e-109 400.2 284 70.1
TAR626G1650 Trochodendron aralioides HOM05D006003 ORTHO05D007388 1.8e-109 399.8 281 69.8
Sabra11G0081200 Salix brachista HOM05D006003 ORTHO05D007388 5.2e-109 398.3 284 70.8
Sopen07g030420 Solanum pennellii HOM05D006003 ORTHO05D007388 6.8e-109 397.9 281 70.5
Oeu005377.2 Olea europaea HOM05D006003 ORTHO05D007388 3.4e-108 395.6 280 70.7
PGR031G3165 Punica granatum HOM05D006003 ORTHO05D007388 3.4e-108 395.6 286 67.5
HanXRQChr14g0439341 Helianthus annuus HOM05D006003 ORTHO05D007388 9.8e-108 394.0 280 69.3
Potri.011G104400 Populus trichocarpa HOM05D006003 ORTHO05D007388 1.7e-107 393.3 275 70.9
Manes.15G098700 Manihot esculenta HOM05D006003 ORTHO05D007388 2.8e-107 392.5 276 68.1
Oeu059254.1 Olea europaea HOM05D006003 ORTHO05D007388 2.8e-107 392.5 281 70.5
Sabra11G0076500 Salix brachista HOM05D006003 ORTHO05D007388 3.7e-107 392.1 284 69.7
AUR62019651 Chenopodium quinoa HOM05D006003 ORTHO05D007388 6.3e-107 391.3 281 67.3
CANSAT56G1876 Cannabis sativa HOM05D006003 ORTHO05D007388 1.1e-106 390.6 287 68.6
MSTRG.6692 Avicennia marina HOM05D006003 ORTHO05D007388 2.4e-106 389.4 282 68.8
Eucgr.F03233 Eucalyptus grandis HOM05D006003 ORTHO05D007388 3.1e-106 389.0 281 68.3
Cc05_g10700 Coffea canephora HOM05D006003 ORTHO05D007388 5.4e-106 388.3 281 69.4
Ah.04g164020 Amaranthus hybridus HOM05D006003 ORTHO05D007388 7.0e-106 387.9 283 68.2
Gohir.A01G047600 Gossypium hirsutum HOM05D006003 ORTHO05D007388 9.2e-106 387.5 276 67.4
Gorai.002G047000 Gossypium raimondii HOM05D006003 ORTHO05D007388 1.2e-105 387.1 276 67.0
TWI39G0770 Tripterygium wilfordii HOM05D006003 ORTHO05D007388 1.6e-105 386.7 280 66.8
MD11G1270000 Malus domestica HOM05D006003 ORTHO05D007388 2.7e-105 386.0 279 67.7
Prupe.4G156300 Prunus persica HOM05D006003 ORTHO05D007388 4.5e-105 385.2 279 68.8
EL10Ac4g08418 Beta vulgaris HOM05D006003 ORTHO05D007388 1.0e-104 384.0 283 65.7
Sc16g0007750 Simmondsia chinensis HOM05D006003 ORTHO05D007388 1.3e-104 383.6 280 65.4
Gohir.D01G038300 Gossypium hirsutum HOM05D006003 ORTHO05D007388 1.1e-103 380.6 268 68.3
PGR083G1570 Punica granatum HOM05D006003 ORTHO05D007388 1.1e-103 380.6 280 66.1
ECA240G1635 Erigeron canadensis HOM05D006003 ORTHO05D007388 1.9e-103 379.8 280 68.2
Migut.M00692 Erythranthe guttata HOM05D006003 ORTHO05D007388 2.5e-103 379.4 278 69.1
Medtr2g073350 Medicago truncatula HOM05D006003 ORTHO05D007388 2.5e-103 379.4 280 67.5
Eucgr.F01368 Eucalyptus grandis HOM05D006003 ORTHO05D007388 3.3e-103 379.0 281 67.3
MD11G1270100 Malus domestica HOM05D006003 ORTHO05D007388 7.3e-103 377.9 282 65.2
HanXRQChr13g0389731 Helianthus annuus HOM05D006003 ORTHO05D007388 1.2e-102 377.1 280 67.5
Ca_03928_v3 Cicer arietinum L. HOM05D006003 ORTHO05D007388 1.4e-101 373.6 280 66.8
Ca_30126_v3 Cicer arietinum L. HOM05D006003 ORTHO05D007388 1.4e-101 373.6 280 66.8
Lalb_Chr20g0109151 Lupinus albus HOM05D006003 ORTHO05D007388 4.0e-101 372.1 283 66.8
MELO3C016117.2 Cucumis melo HOM05D006003 ORTHO05D007388 5.2e-101 371.7 281 65.1
Cfa019519 Carpinus fangiana HOM05D006003 ORTHO05D007388 6.8e-101 371.3 283 64.3
Prupe.4G156400 Prunus persica HOM05D006003 ORTHO05D007388 8.9e-101 370.9 287 65.2
Glyma.12G234000 Glycine max HOM05D006003 ORTHO05D007388 2.0e-100 369.8 279 65.6
Lj3g0000598 Lotus japonicus HOM05D006003 ORTHO05D007388 2.6e-100 369.4 280 66.1
Lj3g0003080 Lotus japonicus HOM05D006003 ORTHO05D007388 2.6e-100 369.4 280 66.1
ClCG07G010140 Citrullus lanatus HOM05D006003 ORTHO05D007388 4.4e-100 368.6 280 64.6
Glyma.13G264900 Glycine max HOM05D006003 ORTHO05D007388 4.4e-100 368.6 280 66.4
Lsat_1_v5_gn_9_100380 Lactuca sativa HOM05D006003 ORTHO05D007388 4.4e-100 368.6 285 65.6
Sed0005123 Sechium edule HOM05D006003 ORTHO05D007388 7.5e-100 367.9 284 64.8
TPR.G12996 Trifolium pratense HOM05D006003 ORTHO05D007388 1.3e-99 367.1 276 66.7
FAN16G0946 Fragaria x ananassa HOM05D006003 ORTHO05D007388 1.7e-99 366.7 278 63.7
CsaV3_4G008190 Cucumis sativus L. HOM05D006003 ORTHO05D007388 3.7e-99 365.5 281 63.7
SGA_v2.0_scaffold181G39767 Striga asiatica HOM05D006003 ORTHO05D007388 6.4e-99 364.8 281 65.8
Cpa.g.sc77.63 Carica papaya HOM05D006003 ORTHO05D007388 8.3e-99 364.4 281 65.1
unitig_62.g23076 Utricularia gibba HOM05D006003 ORTHO05D007388 1.4e-98 363.6 284 63.4
FvH4_3g17730 Fragaria vesca HOM05D006003 ORTHO05D007388 3.2e-98 362.5 278 62.9
FAN25G0059 Fragaria x ananassa HOM05D006003 ORTHO05D007388 2.7e-97 359.4 293 60.8
QL08p024148 Quercus lobata HOM05D006003 ORTHO05D007388 5.9e-97 358.2 283 62.5
Haze_09249 Corylus avellana HOM05D006003 ORTHO05D007388 7.8e-97 357.8 283 63.3
MBI06_g08515_MAGBIO Magnolia biondii HOM05D006003 ORTHO05D007388 1.3e-96 357.1 279 63.4
SalBow8G3868 Salvia bowleyana HOM05D006003 ORTHO05D007388 1.3e-96 357.1 281 66.2
Psat5g233200 Pisum sativum HOM05D006003 ORTHO05D007388 8.6e-96 354.4 281 63.7
Os09g0345700 Oryza sativa ssp. japonica HOM05D006003 ORTHO05D007388 6.2e-94 348.2 280 59.6
HPP92_006378 Vanilla planifolia HOM05D006003 ORTHO05D007388 8.0e-94 347.8 269 63.2
PSO675G5422 Papaver somniferum HOM05D006003 ORTHO05D007388 8.9e-93 344.4 282 59.6
PSO541G5634 Papaver somniferum HOM05D006003 ORTHO05D007388 4.4e-92 342.0 276 60.1
ATR0602G094 Amborella trichopoda HOM05D006003 ORTHO05D007388 1.3e-91 340.5 276 61.2
FAN21G1616 Fragaria x ananassa HOM05D006003 ORTHO05D007388 2.4e-90 336.3 256 64.1
THA.LOC104813991 Tarenaya hassleriana HOM05D006003 ORTHO05D007388 2.4e-90 336.3 285 58.2
COL.COLO4_17472 Corchorus olitorius HOM05D006003 ORTHO05D007388 5.0e-88 328.6 223 71.7
Duzib268G1415 Durio zibethinus HOM05D006003 ORTHO05D007388 6.6e-88 328.2 209 77.5
MD03G1247500 Malus domestica HOM05D006003 ORTHO05D007388 1.5e-87 327.0 245 66.9
AL2G38990 Arabidopsis lyrata HOM05D006003 ORTHO05D007388 3.3e-87 325.9 276 58.0
THA.LOC104808088 Tarenaya hassleriana HOM05D006003 ORTHO05D007388 9.5e-87 324.3 285 57.9
SHI27565 Sapria himalayana HOM05D006003 ORTHO05D007388 2.1e-86 323.2 246 63.0
AT1G78590 Arabidopsis thaliana HOM05D006003 ORTHO05D007388 1.8e-85 320.1 276 57.2
BcaB05g25146 Brassica carinata HOM05D006003 ORTHO05D007388 1.8e-85 320.1 276 57.6
Thhalv10018897m.g Eutrema salsugineum HOM05D006003 ORTHO05D007388 5.2e-85 318.5 276 57.2
BcaC08g47430 Brassica carinata HOM05D006003 ORTHO05D007388 1.5e-84 317.0 276 57.2
Aa31LG4G2370 Aethionema arabicum HOM05D006003 ORTHO05D007388 2.0e-84 316.6 279 56.6
CARHR072080 Cardamine hirsuta HOM05D006003 ORTHO05D007388 2.6e-84 316.2 276 57.2
BolC2t09587H Brassica oleracea HOM05D006003 ORTHO05D007388 5.8e-84 315.1 276 57.6
Sp5g33680 Schrenkiella parvula HOM05D006003 ORTHO05D007388 5.8e-84 315.1 276 58.0
arahy.Tifrunner.gnm1.ann1.U60PIC Arachis hypogaea HOM05D006003 ORTHO05D007388 7.5e-84 314.7 280 59.6
BraA07t31893Z Brassica rapa HOM05D006003 ORTHO05D007388 7.5e-84 314.7 276 56.5
BcaC03g15825 Brassica carinata HOM05D006003 ORTHO05D007388 1.7e-83 313.5 276 57.2
A07p43860 Brassica napus HOM05D006003 ORTHO05D007388 3.7e-83 312.4 276 56.2
C02p35670 Brassica napus HOM05D006003 ORTHO05D007388 4.9e-83 312.0 276 56.9
A02p22240 Brassica napus HOM05D006003 ORTHO05D007388 6.4e-83 311.6 276 56.9
Nn6g34421 Nelumbo nucifera HOM05D006003 ORTHO05D007388 8.3e-83 311.2 209 72.2
Carub.0002s2544 Capsella rubella HOM05D006003 ORTHO05D007388 1.4e-82 310.5 276 56.2
Dinv26706 Davidia involucrata HOM05D006003 ORTHO05D007388 1.4e-82 310.5 199 78.9
C06p52490 Brassica napus HOM05D006003 ORTHO05D007388 1.9e-82 310.1 275 55.6
BolC6t40268H Brassica oleracea HOM05D006003 ORTHO05D007388 1.9e-82 310.1 276 55.4
BraA02t07230Z Brassica rapa HOM05D006003 ORTHO05D007388 7.1e-82 308.1 276 56.5
CDE04G1397 Ceratophyllum demersum HOM05D006003 ORTHO05D007388 1.0e-80 304.3 223 66.4
Sc03g0010720 Simmondsia chinensis HOM05D006003 ORTHO05D007388 1.3e-80 303.9 281 56.6
CDE10G0670 Ceratophyllum demersum HOM05D000595 ORTHO05D001274 2.5e-79 299.7 235 60.9
Phvul.005G076600 Phaseolus vulgaris HOM05D006003 ORTHO05D007388 2.0e-76 290.0 222 66.2
SMO169G0094 Selaginella moellendorffii HOM05D006003 ORTHO05D007388 1.0e-72 277.7 276 51.1
CiPaw.11G156000 Carya illinoinensis HOM05D006003 ORTHO05D007388 1.7e-72 276.9 215 64.7
CBR_g12698 Chara braunii HOM05D006003 ORTHO05D007388 7.3e-71 271.6 292 46.9
Mapoly0214s0005 Marchantia polymorpha HOM05D006003 ORTHO05D007388 2.0e-68 263.5 274 49.6
Pp3c14_23600 Physcomitrium patens HOM05D006003 ORTHO05D007388 1.1e-66 257.7 274 48.2
Zm00001eb098430 Zea mays HOM05D006003 ORTHO05D007388 1.2e-60 237.7 203 57.6
MD03G1248900 Malus domestica HOM05D006003 ORTHO05D007388 5.1e-48 195.7 192 57.8
FAN11G1972 Fragaria x ananassa HOM05D006003 ORTHO05D007388 2.2e-43 180.3 134 60.4
SalBow7G3240 Salvia bowleyana HOM05D006003 ORTHO05D007388 6.5e-43 178.7 138 58.7
AUR62039577 Chenopodium quinoa HOM05D006003 ORTHO05D007388 1.9e-39 167.2 109 67.9
MCO14G555 Micromonas commoda HOM05D006003 ORTHO05D007388 9.6e-39 164.9 280 38.9
RcHm_v2.0_Chr5g0029501 Rosa chinensis HOM05D006003 ORTHO05D007388 2.1e-33 147.1 111 60.4
RcHm_v2.0_Chr5g0029511 Rosa chinensis HOM05D006003 ORTHO05D007388 7.9e-33 145.2 114 65.8
Psat5g275400 Pisum sativum HOM05D006003 ORTHO05D007388 1.1e-23 114.8 83 61.4
PRCOL_00004450 Prasinoderma coloniale HOM05D006003 ORTHO05D007388 1.2e-12 78.2 275 29.1
CDE03G0511 Ceratophyllum demersum HOM05D006003 ORTHO05D007388 1.7e-11 74.3 68 61.8


User provided reference genes

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