Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1C79T2 Lonicera japonica HOM05D004940 ORTHO05D007805 2.3e-90 335.5 162 100.0
Lj1A78G31 Lonicera japonica HOM05D004940 ORTHO05D007805 2.1e-75 285.8 135 99.3
Lj1C71G15 Lonicera japonica HOM05D004940 ORTHO05D007805 8.1e-72 273.9 131 96.9
CSS0021031 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D007805 5.6e-65 251.1 132 87.1
Prupe.8G218700 Prunus persica HOM05D004940 ORTHO05D007805 1.6e-64 249.6 131 85.5
Actinidia37536 Actinidia chinensis HOM05D004940 ORTHO05D007805 2.1e-64 249.2 130 87.7
Dinv16378 Davidia involucrata HOM05D004940 ORTHO05D007805 2.1e-64 249.2 130 86.9
arahy.Tifrunner.gnm1.ann1.N1VHSE Arachis hypogaea HOM05D004940 ORTHO05D007805 2.8e-64 248.8 130 83.8
arahy.Tifrunner.gnm1.ann1.YK26R7 Arachis hypogaea HOM05D004940 ORTHO05D007805 2.8e-64 248.8 130 83.8
vmacro02697 Vaccinium macrocarpon HOM05D004940 ORTHO05D007805 2.8e-64 248.8 130 85.4
Aqoxy5G00176 Aquilegia oxysepala HOM05D004940 ORTHO05D007805 3.7e-64 248.4 130 83.8
TWI12G0664 Tripterygium wilfordii HOM05D004940 ORTHO05D007805 4.8e-64 248.1 130 84.6
Nn1g02898 Nelumbo nucifera HOM05D004940 ORTHO05D007805 1.1e-63 246.9 130 83.8
Cc01_g18010 Coffea canephora HOM05D004940 ORTHO05D007805 1.8e-63 246.1 130 85.4
COL.COLO4_36581 Corchorus olitorius HOM05D004940 ORTHO05D007805 5.3e-63 244.6 132 82.6
Ca_08723_v3 Cicer arietinum L. HOM05D004940 ORTHO05D007805 6.9e-63 244.2 134 82.1
Duzib133G0552 Durio zibethinus HOM05D004940 ORTHO05D007805 1.2e-62 243.4 130 83.1
TAR362G0048 Trochodendron aralioides HOM05D004940 ORTHO05D007805 1.5e-62 243.0 130 82.3
Migut.D00459 Erythranthe guttata HOM05D004940 ORTHO05D007805 2.0e-62 242.7 130 85.4
Migut.N02221 Erythranthe guttata HOM05D004940 ORTHO05D007805 2.0e-62 242.7 130 85.4
SalBow4G0784 Salvia bowleyana HOM05D004940 ORTHO05D007805 3.4e-62 241.9 130 82.3
Cpa.g.sc165.41 Carica papaya HOM05D004940 ORTHO05D007805 4.5e-62 241.5 130 83.1
Ciclev10019263m.g Citrus clementina HOM05D004940 ORTHO05D007805 4.5e-62 241.5 130 83.1
Gohir.A08G045700 Gossypium hirsutum HOM05D004940 ORTHO05D007805 4.5e-62 241.5 134 83.6
Psat3g055720 Pisum sativum HOM05D004940 ORTHO05D007805 4.5e-62 241.5 134 81.3
Glyma.19G166800 Glycine max HOM05D004940 ORTHO05D007805 5.8e-62 241.1 130 83.1
MSTRG.18341 Avicennia marina HOM05D004940 ORTHO05D007805 7.6e-62 240.7 130 83.8
Eucgr.A01366 Eucalyptus grandis HOM05D004940 ORTHO05D007805 1.0e-61 240.4 130 80.0
Potri.014G195500 Populus trichocarpa HOM05D004940 ORTHO05D007805 1.0e-61 240.4 130 83.1
Thecc.01G253300 Theobroma cacao HOM05D004940 ORTHO05D007805 1.0e-61 240.4 130 83.1
MD05G1192400 Malus domestica HOM05D004940 ORTHO05D007805 1.3e-61 240.0 130 83.1
RcHm_v2.0_Chr6g0287291 Rosa chinensis HOM05D004940 ORTHO05D007805 1.3e-61 240.0 130 82.3
MD10G1178900 Malus domestica HOM05D004940 ORTHO05D007805 2.2e-61 239.2 130 82.3
Manes.12G035200 Manihot esculenta HOM05D004940 ORTHO05D007805 2.2e-61 239.2 130 83.8
Medtr7g098010 Medicago truncatula HOM05D004940 ORTHO05D007805 2.2e-61 239.2 134 80.6
GSVIVG01028386001 Vitis vinifera HOM05D004940 ORTHO05D007805 2.9e-61 238.8 135 78.5
Gohir.D08G056200 Gossypium hirsutum HOM05D004940 ORTHO05D007805 8.4e-61 237.3 130 84.6
Gorai.004G057300 Gossypium raimondii HOM05D004940 ORTHO05D007805 8.4e-61 237.3 130 84.6
DCAR_018506 Daucus carota HOM05D004940 ORTHO05D007805 1.1e-60 236.9 147 76.9
Nitab4.5_0002389g0100 Nicotiana tabacum HOM05D004940 ORTHO05D007805 1.4e-60 236.5 130 83.1
Nitab4.5_0003295g0190 Nicotiana tabacum HOM05D004940 ORTHO05D007805 1.4e-60 236.5 130 83.1
AUR62025474 Chenopodium quinoa HOM05D004940 ORTHO05D007805 1.9e-60 236.1 132 79.5
DCAR_000927 Daucus carota HOM05D004940 ORTHO05D007805 1.9e-60 236.1 130 83.8
HanXRQChr04g0111301 Helianthus annuus HOM05D004940 ORTHO05D007805 2.5e-60 235.7 130 80.8
PSO764G0099 Papaver somniferum HOM05D004940 ORTHO05D007805 2.5e-60 235.7 130 81.5
PSO832G3423 Papaver somniferum HOM05D004940 ORTHO05D007805 2.5e-60 235.7 130 81.5
TWI75G1829 Tripterygium wilfordii HOM05D004940 ORTHO05D007805 2.5e-60 235.7 138 77.5
Sc24g0003690 Simmondsia chinensis HOM05D004940 ORTHO05D007805 3.2e-60 235.3 130 80.8
TPR.G9192 Trifolium pratense HOM05D004940 ORTHO05D007805 3.2e-60 235.3 134 79.1
Duzib138G0347 Durio zibethinus HOM05D004940 ORTHO05D007805 4.2e-60 235.0 133 80.5
Lj1g0003710 Lotus japonicus HOM05D004940 ORTHO05D007805 4.2e-60 235.0 130 80.8
AUR62008763 Chenopodium quinoa HOM05D004940 ORTHO05D007805 5.5e-60 234.6 130 80.0
Solyc09g072710.4 Solanum lycopersicum HOM05D004940 ORTHO05D007805 7.1e-60 234.2 130 81.5
Sopen09g028520 Solanum pennellii HOM05D004940 ORTHO05D007805 7.1e-60 234.2 130 81.5
EL10Ac7g17647 Beta vulgaris HOM05D004940 ORTHO05D007805 9.3e-60 233.8 130 80.0
FAN15G2608 Fragaria x ananassa HOM05D004940 ORTHO05D007805 9.3e-60 233.8 132 78.8
Glyma.03G165500 Glycine max HOM05D004940 ORTHO05D007805 1.2e-59 233.4 130 80.8
CAN.G1270.3 Capsicum annuum HOM05D004940 ORTHO05D007805 1.6e-59 233.0 130 80.8
Haze_24676 Corylus avellana HOM05D004940 ORTHO05D007805 1.6e-59 233.0 157 69.4
CsaV3_3G028180 Cucumis sativus L. HOM05D004940 ORTHO05D007805 1.6e-59 233.0 130 80.8
PGR031G0691 Punica granatum HOM05D004940 ORTHO05D007805 2.1e-59 232.6 130 80.0
Sabra14G0144700 Salix brachista HOM05D004940 ORTHO05D007805 2.1e-59 232.6 130 80.8
FAN27G1261 Fragaria x ananassa HOM05D004940 ORTHO05D007805 3.5e-59 231.9 130 79.2
ClCG07G001250 Citrullus lanatus HOM05D004940 ORTHO05D007805 6.0e-59 231.1 130 79.2
FAN20G1599 Fragaria x ananassa HOM05D004940 ORTHO05D007805 7.9e-59 230.7 155 68.4
Sed0008536 Sechium edule HOM05D004940 ORTHO05D007805 7.9e-59 230.7 130 79.2
Atru.chr5.1786 Acer truncatum HOM05D004940 ORTHO05D007805 3.0e-58 228.8 130 79.2
Thhalv10007051m.g Eutrema salsugineum HOM05D004940 ORTHO05D007805 3.9e-58 228.4 130 80.0
FAN24G3024 Fragaria x ananassa HOM05D004940 ORTHO05D007805 3.9e-58 228.4 132 77.3
Lalb_Chr01g0019571 Lupinus albus HOM05D004940 ORTHO05D007805 3.9e-58 228.4 130 78.5
SGA_v2.0_scaffold1G00640 Striga asiatica HOM05D004940 ORTHO05D007805 3.9e-58 228.4 143 74.8
Lsat_1_v5_gn_8_92240 Lactuca sativa HOM05D004940 ORTHO05D007805 5.1e-58 228.0 130 77.7
CANSAT01G2138 Cannabis sativa HOM05D004940 ORTHO05D007805 8.7e-58 227.3 130 77.7
BcaC05g24475 Brassica carinata HOM05D004940 ORTHO05D007805 1.1e-57 226.9 130 78.5
C05p02330 Brassica napus HOM05D004940 ORTHO05D007805 1.1e-57 226.9 130 78.5
BolC5t29011H Brassica oleracea HOM05D004940 ORTHO05D007805 1.1e-57 226.9 130 78.5
ECA236G4817 Erigeron canadensis HOM05D004940 ORTHO05D007805 1.1e-57 226.9 130 76.2
A10p02520 Brassica napus HOM05D004940 ORTHO05D007805 1.5e-57 226.5 130 77.7
BraA10t42520Z Brassica rapa HOM05D004940 ORTHO05D007805 1.5e-57 226.5 130 77.7
Carub.0001s0317 Capsella rubella HOM05D004940 ORTHO05D007805 1.5e-57 226.5 130 79.2
AL1G13620 Arabidopsis lyrata HOM05D004940 ORTHO05D007805 3.3e-57 225.3 130 78.5
CARHR003360 Cardamine hirsuta HOM05D004940 ORTHO05D007805 3.3e-57 225.3 130 78.5
CiPaw.03G268400 Carya illinoinensis HOM05D004940 ORTHO05D007805 3.3e-57 225.3 130 78.5
BcaC07g42217 Brassica carinata HOM05D004940 ORTHO05D007805 4.3e-57 224.9 130 77.7
Phvul.001G163200 Phaseolus vulgaris HOM05D004940 ORTHO05D007805 5.7e-57 224.6 130 80.0
AT1G04010 Arabidopsis thaliana HOM05D004940 ORTHO05D007805 9.6e-57 223.8 130 76.9
FvH4_2g20890 Fragaria vesca HOM05D004940 ORTHO05D007805 1.3e-56 223.4 130 76.9
Peaxi162Scf00415g00416 Petunia axillaris HOM05D004940 ORTHO05D007805 2.1e-56 222.6 158 69.0
A09p68080 Brassica napus HOM05D004940 ORTHO05D007805 3.7e-56 221.9 130 76.9
C08p52520 Brassica napus HOM05D004940 ORTHO05D007805 3.7e-56 221.9 130 76.9
BolC8t52779H Brassica oleracea HOM05D004940 ORTHO05D007805 3.7e-56 221.9 130 76.9
BraA09t42143Z Brassica rapa HOM05D004940 ORTHO05D007805 3.7e-56 221.9 130 76.9
VMungo1383G2176 Vigna mungo HOM05D004940 ORTHO05D007805 6.3e-56 221.1 130 79.2
Zm00001eb258680 Zea mays HOM05D004940 ORTHO05D007805 6.3e-56 221.1 130 76.2
Sp1g02850 Schrenkiella parvula HOM05D004940 ORTHO05D007805 8.2e-56 220.7 130 75.4
Manes.13G037500 Manihot esculenta HOM05D004940 ORTHO05D007805 1.4e-55 219.9 130 78.5
Aa31LG1G20810 Aethionema arabicum HOM05D004940 ORTHO05D007805 6.9e-55 217.6 130 74.6
THA.LOC104826048 Tarenaya hassleriana HOM05D004940 ORTHO05D007805 9.0e-55 217.2 130 76.2
Oeu028892.3 Olea europaea HOM05D004940 ORTHO05D007805 1.0e-53 213.8 192 56.8
ATR0736G200 Amborella trichopoda HOM05D004940 ORTHO05D007805 2.5e-52 209.1 130 72.3
Pp3c16_20320 Physcomitrium patens HOM05D004940 ORTHO05D007805 1.2e-46 190.3 131 68.7
SMO137G0189 Selaginella moellendorffii HOM05D004940 ORTHO05D007805 3.8e-45 185.3 135 60.0
MBI07_g18994_MAGBIO Magnolia biondii HOM05D004940 ORTHO05D007805 6.5e-45 184.5 130 65.4
Rhsim13G0038600 Rhododendron simsii HOM05D004940 ORTHO05D007805 6.5e-45 184.5 98 84.7
SMO137G0113 Selaginella moellendorffii HOM05D004940 ORTHO05D007805 1.2e-43 180.3 136 61.0
AagrBONN_evm.TU.Sc2ySwM_344.1925 Anthoceros agrestis HOM05D004940 ORTHO05D007805 2.1e-43 179.5 137 61.3
QL09p040550 Quercus lobata HOM05D004940 ORTHO05D007805 3.9e-42 175.3 276 38.0
SHI09711 Sapria himalayana HOM05D004940 ORTHO05D018819 2.5e-41 172.6 116 69.0
Hund05470 Selenicereus undatus HOM05D004940 ORTHO05D007805 2.2e-40 169.5 98 75.5
Atru.chr5.1783 Acer truncatum HOM05D004940 ORTHO05D007805 2.9e-37 159.1 111 68.5
Mapoly0023s0070 Marchantia polymorpha HOM05D004940 ORTHO05D007805 1.4e-36 156.8 131 55.7
SEGI_08888 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 8.8e-34 147.5 97 71.1
CDE01G0548 Ceratophyllum demersum HOM05D004940 ORTHO05D007805 4.5e-30 135.2 74 78.4
CSS0008401 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 2.7e-22 109.4 57 87.7
CSS0049470 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 2.7e-22 109.4 57 87.7
CSS0034361 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 4.5e-22 108.6 57 87.7
CSS0033490 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 5.9e-22 108.2 57 87.7
CSS0026527 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 2.2e-21 106.3 57 86.0
CSS0024627 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 2.0e-17 93.2 51 86.3
CSS0048666 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 2.0e-17 93.2 51 86.3
MELO3C012862.2 Cucumis melo HOM05D004940 ORTHO05D007805 2.7e-11 72.8 38 81.6
Os02g0814100 Oryza sativa ssp. japonica HOM05D004940 ORTHO05D007805 6.1e-11 71.6 71 47.9
HPP92_012807 Vanilla planifolia HOM05D004940 ORTHO05D007805 1.1e-07 60.8 28 85.7
HPP92_012808 Vanilla planifolia HOM05D004940 ORTHO05D007805 1.8e-07 60.1 31 83.9
SMO181G0022 Selaginella moellendorffii HOM05D004940 ORTHO05D037547 7.0e-07 58.2 56 57.1


User provided reference genes

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