Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1C795T1 Lonicera japonica HOM05D005756 ORTHO05D018916 2.9e-52 208.4 111 100.0
Rhsim04G0027400 Rhododendron simsii HOM05D005756 ORTHO05D007991 6.7e-17 90.9 53 86.8
GSVIVG01030075001 Vitis vinifera HOM05D005756 ORTHO05D007991 1.3e-15 86.7 51 88.2
Nn1g03213 Nelumbo nucifera HOM05D005756 ORTHO05D007991 4.8e-15 84.7 62 71.0
CSS0006225 Camellia sinensis var. sinensis HOM05D005756 ORTHO05D007991 1.1e-14 83.6 54 83.3
Hma1.2p1_0545F.1_g176010 Hydrangea macrophylla HOM05D005756 ORTHO05D018916 1.4e-14 83.2 74 68.9
Oeu021293.1 Olea europaea HOM05D005756 ORTHO05D007991 1.8e-14 82.8 53 81.1
Cpa.g.sc211.21 Carica papaya HOM05D005756 ORTHO05D018916 2.4e-14 82.4 67 73.1
Dinv26618 Davidia involucrata HOM05D005756 ORTHO05D007991 2.4e-14 82.4 76 68.4
Actinidia35206 Actinidia chinensis HOM05D005756 ORTHO05D007991 6.9e-14 80.9 54 77.8
Prupe.3G198700 Prunus persica HOM05D005756 ORTHO05D007991 6.9e-14 80.9 80 66.2
ClCG02G009290 Citrullus lanatus HOM05D005756 ORTHO05D007991 1.2e-13 80.1 52 76.9
MELO3C025971.2 Cucumis melo HOM05D005756 ORTHO05D007991 2.0e-13 79.3 52 73.1
Peaxi162Scf00802g00236 Petunia axillaris HOM05D005756 ORTHO05D007991 2.6e-13 79.0 79 63.3
Ciclev10018016m.g Citrus clementina HOM05D005756 ORTHO05D007991 3.4e-13 78.6 66 71.2
Haze_12636 Corylus avellana HOM05D005756 ORTHO05D007991 3.4e-13 78.6 63 71.4
Dinv21288 Davidia involucrata HOM05D005756 ORTHO05D018916 3.4e-13 78.6 52 75.0
CsaV3_6G009540 Cucumis sativus L. HOM05D005756 ORTHO05D007991 5.9e-13 77.8 79 60.8
FAN09G1647 Fragaria x ananassa HOM05D005756 ORTHO05D007991 5.9e-13 77.8 67 64.2
FAN05G2330 Fragaria x ananassa HOM05D005756 ORTHO05D007991 7.6e-13 77.4 69 63.8
Actinidia18810 Actinidia chinensis HOM05D005756 ORTHO05D007991 1.0e-12 77.0 52 76.9
Sed0018608 Sechium edule HOM05D005756 ORTHO05D007991 1.7e-12 76.3 53 73.6
FvH4_6g40720 Fragaria vesca HOM05D005756 ORTHO05D007991 3.8e-12 75.1 90 55.6
FAN14G2144 Fragaria x ananassa HOM05D005756 ORTHO05D007991 3.8e-12 75.1 90 55.6
Sabra14G0126700 Salix brachista HOM05D005756 ORTHO05D007991 6.5e-12 74.3 62 67.7
QL08p028191 Quercus lobata HOM05D005756 ORTHO05D007991 8.5e-12 73.9 54 74.1
DCAR_019685 Daucus carota HOM05D005756 ORTHO05D018916 1.1e-11 73.6 80 60.0
MD09G1126000 Malus domestica HOM05D005756 ORTHO05D007991 1.4e-11 73.2 69 66.7
Thecc.01G193500 Theobroma cacao HOM05D005756 ORTHO05D007991 1.9e-11 72.8 54 68.5
Oeu032118.1 Olea europaea HOM05D005756 ORTHO05D007991 2.5e-11 72.4 68 60.3
Duzib211G0508 Durio zibethinus HOM05D005756 ORTHO05D007991 3.2e-11 72.0 54 68.5
Gohir.D11G156320 Gossypium hirsutum HOM05D005756 ORTHO05D007991 3.2e-11 72.0 77 61.0
Gohir.D07G171500 Gossypium hirsutum HOM05D005756 ORTHO05D007991 7.2e-11 70.9 58 67.2
Gorai.001G191800 Gossypium raimondii HOM05D005756 ORTHO05D007991 7.2e-11 70.9 58 67.2
Lsat_1_v5_gn_7_97180 Lactuca sativa HOM05D005756 ORTHO05D007991 7.2e-11 70.9 53 67.9
Potri.014G166400 Populus trichocarpa HOM05D005756 ORTHO05D007991 7.2e-11 70.9 53 69.8
Gohir.A07G164300 Gossypium hirsutum HOM05D005756 ORTHO05D007991 9.4e-11 70.5 58 67.2
Oeu052200.1 Olea europaea HOM05D005756 ORTHO05D007991 1.2e-10 70.1 80 60.0
SGA_v2.0_scaffold265G46105 Striga asiatica HOM05D005756 ORTHO05D007991 1.2e-10 70.1 59 64.4
Duzib133G1068 Durio zibethinus HOM05D005756 ORTHO05D007991 1.6e-10 69.7 74 56.8
HanXRQChr11g0328881 Helianthus annuus HOM05D005756 ORTHO05D007991 2.1e-10 69.3 52 65.4
TAR629G3088 Trochodendron aralioides HOM05D005756 ORTHO05D007991 3.6e-10 68.6 86 55.8
THA.LOC104815437 Tarenaya hassleriana HOM05D005756 ORTHO05D007991 4.6e-10 68.2 54 72.2
SalBow1G0676 Salvia bowleyana HOM05D005756 ORTHO05D007991 6.1e-10 67.8 47 74.5
Migut.K00325 Erythranthe guttata HOM05D005756 ORTHO05D007991 7.9e-10 67.4 64 65.6
CAN.G60.7 Capsicum annuum HOM05D005756 ORTHO05D007991 1.0e-09 67.0 55 70.9
CiPaw.03G281000 Carya illinoinensis HOM05D005756 ORTHO05D007991 1.0e-09 67.0 53 69.8
Oeu027645.1 Olea europaea HOM05D005756 ORTHO05D018916 1.0e-09 67.0 98 54.1
Manes.12G064800 Manihot esculenta HOM05D005756 ORTHO05D007991 1.4e-09 66.6 52 65.4
Gohir.A07G191400 Gossypium hirsutum HOM05D005756 ORTHO05D007991 1.8e-09 66.2 65 60.0
Peaxi162Scf00218g00178 Petunia axillaris HOM05D005756 ORTHO05D007991 1.8e-09 66.2 81 60.5
RcHm_v2.0_Chr2g0156171 Rosa chinensis HOM05D005756 ORTHO05D007991 2.3e-09 65.9 87 57.5
COL.COLO4_33341 Corchorus olitorius HOM05D005756 ORTHO05D007991 3.0e-09 65.5 75 54.7
Gorai.001G221400 Gossypium raimondii HOM05D005756 ORTHO05D007991 3.0e-09 65.5 77 57.1
Solyc05g041220.3 Solanum lycopersicum HOM05D005756 ORTHO05D007991 3.0e-09 65.5 56 69.6
Atru.chr6.3377 Acer truncatum HOM05D005756 ORTHO05D007991 3.9e-09 65.1 73 53.4
BcaC02g09499 Brassica carinata HOM05D005756 ORTHO05D007991 5.1e-09 64.7 80 58.8
C04p43490 Brassica napus HOM05D005756 ORTHO05D007991 5.1e-09 64.7 80 58.8
BolC4t25929H Brassica oleracea HOM05D005756 ORTHO05D007991 5.1e-09 64.7 80 58.8
unitig_748.g7200 Utricularia gibba HOM05D005756 ORTHO05D007991 6.7e-09 64.3 55 61.8
Aa31sc373G50 Aethionema arabicum HOM05D005756 ORTHO05D007991 8.8e-09 63.9 80 55.0
SalBow1G7885 Salvia bowleyana HOM05D005756 ORTHO05D007991 1.5e-08 63.2 42 76.2
BcaB06g26996 Brassica carinata HOM05D005756 ORTHO05D007991 1.9e-08 62.8 80 57.5
A04p10010 Brassica napus HOM05D005756 ORTHO05D007991 1.9e-08 62.8 80 57.5
BraA04t16663Z Brassica rapa HOM05D005756 ORTHO05D007991 1.9e-08 62.8 80 57.5
ECA236G0821 Erigeron canadensis HOM05D005756 ORTHO05D007991 1.9e-08 62.8 52 57.7
Sopen05g025200 Solanum pennellii HOM05D005756 ORTHO05D000001 1.9e-08 62.8 55 67.3
Sed0020254 Sechium edule HOM05D005756 ORTHO05D007991 5.7e-08 61.2 41 73.2
Phvul.008G284100 Phaseolus vulgaris HOM05D005756 ORTHO05D007991 9.7e-08 60.5 51 66.7
Carub.0007s3155 Capsella rubella HOM05D005756 ORTHO05D007991 1.3e-07 60.1 54 63.0
TPR.G1270 Trifolium pratense HOM05D005756 ORTHO05D007991 1.3e-07 60.1 52 65.4
Nitab4.5_0010487g0010 Nicotiana tabacum HOM05D005756 ORTHO05D007991 1.7e-07 59.7 42 73.8
Manes.13G062400 Manihot esculenta HOM05D005756 ORTHO05D007991 2.2e-07 59.3 89 47.2
Nitab4.5_0000006g0690 Nicotiana tabacum HOM05D005756 ORTHO05D007991 2.2e-07 59.3 42 73.8
Sc21g0000630 Simmondsia chinensis HOM05D005756 ORTHO05D007991 2.8e-07 58.9 41 75.6
Sc21g0000680 Simmondsia chinensis HOM05D005756 ORTHO05D018916 4.8e-07 58.2 60 63.3
unitig_0.g2684 Utricularia gibba HOM05D005756 ORTHO05D007991 6.3e-07 57.8 37 75.7
AT5G35770 Arabidopsis thaliana HOM05D005756 ORTHO05D007991 8.2e-07 57.4 98 45.9
Solyc07g045560.1 Solanum lycopersicum HOM05D005756 ORTHO05D018916 8.2e-07 57.4 43 67.4
PGR042G1143 Punica granatum HOM05D005756 ORTHO05D007991 1.1e-06 57.0 43 67.4
Psat2g005040 Pisum sativum HOM05D005756 ORTHO05D007991 2.4e-06 55.8 53 64.2
LjContig00081g0010185 Lotus japonicus HOM05D005756 ORTHO05D007991 3.1e-06 55.5 58 56.9
Sp7g06350 Schrenkiella parvula HOM05D005756 ORTHO05D007991 4.1e-06 55.1 80 55.0
AL7G44670 Arabidopsis lyrata HOM05D005756 ORTHO05D007991 5.3e-06 54.7 78 52.6
Lalb_Chr10g0107581 Lupinus albus HOM05D005756 ORTHO05D007991 9.1e-06 53.9 85 51.8


User provided reference genes

Program Settings