Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1C757T0 Lonicera japonica HOM05D007466 ORTHO05D002463 1.0e-63 246.5 121 100.0
CSS0032012 Camellia sinensis var. sinensis HOM05D007466 ORTHO05D002463 5.0e-50 201.1 121 77.7
CSS0024645 Camellia sinensis var. sinensis HOM05D007466 ORTHO05D002463 2.5e-49 198.7 121 76.9
Actinidia32076 Actinidia chinensis HOM05D007466 ORTHO05D002463 1.8e-47 192.6 121 76.0
Dinv02746 Davidia involucrata HOM05D007466 ORTHO05D002463 2.3e-47 192.2 121 74.4
Dinv18525 Davidia involucrata HOM05D007466 ORTHO05D002463 2.3e-47 192.2 121 74.4
DCAR_021185 Daucus carota HOM05D007466 ORTHO05D002463 2.0e-46 189.1 121 73.6
Lsat_1_v5_gn_5_103881 Lactuca sativa HOM05D007466 ORTHO05D002463 2.2e-45 185.7 118 72.9
Manes.13G072400 Manihot esculenta HOM05D007466 ORTHO05D002463 4.1e-44 181.4 121 70.2
Nitab4.5_0005894g0010 Nicotiana tabacum HOM05D007466 ORTHO05D002463 2.7e-43 178.7 117 70.9
CAN.G921.12 Capsicum annuum HOM05D007466 ORTHO05D002463 7.7e-43 177.2 119 70.6
HanXRQChr14g0459021 Helianthus annuus HOM05D007466 ORTHO05D002463 1.0e-42 176.8 118 70.3
QL08p033690 Quercus lobata HOM05D007466 ORTHO05D002463 1.0e-42 176.8 120 68.3
Psat2g121080 Pisum sativum HOM05D007466 ORTHO05D002463 1.3e-42 176.4 117 68.4
Atru.chr6.3156 Acer truncatum HOM05D007466 ORTHO05D002463 1.7e-42 176.0 121 67.8
Potri.017G037600 Populus trichocarpa HOM05D007466 ORTHO05D002463 1.7e-42 176.0 117 69.2
Medtr2g088760 Medicago truncatula HOM05D007466 ORTHO05D002463 3.8e-42 174.9 120 68.3
Ciclev10017724m.g Citrus clementina HOM05D007466 ORTHO05D002463 5.0e-42 174.5 121 69.4
Lj3g0019012 Lotus japonicus HOM05D007466 ORTHO05D002463 6.5e-42 174.1 120 66.7
Phvul.005G113900 Phaseolus vulgaris HOM05D007466 ORTHO05D002463 8.5e-42 173.7 120 65.8
Prupe.3G219500 Prunus persica HOM05D007466 ORTHO05D002463 8.5e-42 173.7 121 66.9
Rhsim06G0158700 Rhododendron simsii HOM05D007466 ORTHO05D002463 8.5e-42 173.7 121 71.9
VMungo1080G0180 Vigna mungo HOM05D007466 ORTHO05D002463 8.5e-42 173.7 120 65.8
Sabra17G0024500 Salix brachista HOM05D007466 ORTHO05D002463 1.1e-41 173.3 119 66.4
CiPaw.04G117300 Carya illinoinensis HOM05D007466 ORTHO05D002463 1.5e-41 172.9 117 68.4
Psat5g265200 Pisum sativum HOM05D007466 ORTHO05D002463 1.9e-41 172.6 119 66.4
Oeu048075.1 Olea europaea HOM05D007466 ORTHO05D002463 2.5e-41 172.2 119 65.5
EL10Ac2g04092 Beta vulgaris HOM05D007466 ORTHO05D002463 3.2e-41 171.8 121 66.1
Duzib251G0094 Durio zibethinus HOM05D007466 ORTHO05D002463 7.2e-41 170.6 119 67.2
Gohir.A12G156100 Gossypium hirsutum HOM05D007466 ORTHO05D002463 7.2e-41 170.6 117 66.7
Gohir.D12G159200 Gossypium hirsutum HOM05D007466 ORTHO05D002463 9.5e-41 170.2 117 67.5
Gorai.008G172300 Gossypium raimondii HOM05D007466 ORTHO05D002463 9.5e-41 170.2 117 67.5
Ah.10g035420 Amaranthus hybridus HOM05D007466 ORTHO05D002463 1.6e-40 169.5 119 64.7
Prupe.3G131400 Prunus persica HOM05D007466 ORTHO05D002463 1.6e-40 169.5 121 69.4
MD09G1246300 Malus domestica HOM05D007466 ORTHO05D002463 2.1e-40 169.1 115 68.7
Solyc07g052500.1 Solanum lycopersicum HOM05D007466 ORTHO05D002463 2.8e-40 168.7 117 68.4
Thecc.02G312400 Theobroma cacao HOM05D007466 ORTHO05D002463 2.8e-40 168.7 119 67.2
Ca_01590_v3 Cicer arietinum L. HOM05D007466 ORTHO05D002463 6.1e-40 167.5 120 62.5
FAN05G5573 Fragaria x ananassa HOM05D007466 ORTHO05D002463 6.1e-40 167.5 121 64.5
GSVIVG01030614001 Vitis vinifera HOM05D007466 ORTHO05D002463 6.1e-40 167.5 121 63.6
MD17G1239100 Malus domestica HOM05D007466 ORTHO05D002463 8.0e-40 167.2 121 66.1
Cfa014433 Carpinus fangiana HOM05D007466 ORTHO05D002463 1.0e-39 166.8 119 66.4
FvH4_6g26390 Fragaria vesca HOM05D007466 ORTHO05D002463 1.0e-39 166.8 118 63.6
TPR.G4193 Trifolium pratense HOM05D007466 ORTHO05D002463 1.4e-39 166.4 120 63.3
FAN02G3170 Fragaria x ananassa HOM05D007466 ORTHO05D002463 1.8e-39 166.0 118 62.7
ClCG02G001800 Citrullus lanatus HOM05D007466 ORTHO05D002463 2.3e-39 165.6 121 63.6
FAN14G1602 Fragaria x ananassa HOM05D007466 ORTHO05D002463 3.0e-39 165.2 121 63.6
FvH4_6g43480 Fragaria vesca HOM05D007466 ORTHO05D002463 4.0e-39 164.9 121 63.6
RcHm_v2.0_Chr2g0159951 Rosa chinensis HOM05D007466 ORTHO05D002463 4.0e-39 164.9 121 62.8
FAN09G4112 Fragaria x ananassa HOM05D007466 ORTHO05D002463 5.2e-39 164.5 121 62.8
TWI36G1433 Tripterygium wilfordii HOM05D007466 ORTHO05D002463 5.2e-39 164.5 121 66.9
arahy.Tifrunner.gnm1.ann1.N3UINY Arachis hypogaea HOM05D007466 ORTHO05D002463 6.8e-39 164.1 120 63.3
FAN02G1346 Fragaria x ananassa HOM05D007466 ORTHO05D002463 6.8e-39 164.1 121 63.6
FAN05G5633 Fragaria x ananassa HOM05D007466 ORTHO05D002463 1.2e-38 163.3 118 62.7
Cc00_g30040 Coffea canephora HOM05D007466 ORTHO05D002463 4.4e-38 161.4 121 60.3
FAN09G2303 Fragaria x ananassa HOM05D007466 ORTHO05D002463 4.4e-38 161.4 118 61.0
CsaV3_7G003740 Cucumis sativus L. HOM05D007466 ORTHO05D002463 5.7e-38 161.0 119 65.5
Haze_12891 Corylus avellana HOM05D007466 ORTHO05D002463 1.7e-37 159.5 117 64.1
COL.COLO4_27678 Corchorus olitorius HOM05D007466 ORTHO05D002463 4.9e-37 157.9 122 62.3
Lalb_Chr22g0349591 Lupinus albus HOM05D007466 ORTHO05D002463 6.3e-37 157.5 117 61.5
Eucgr.A01722 Eucalyptus grandis HOM05D007466 ORTHO05D002463 8.3e-37 157.1 121 59.5
CANSAT64G0630 Cannabis sativa HOM05D007466 ORTHO05D002463 9.2e-36 153.7 122 60.7
CARHR126170 Cardamine hirsuta HOM05D007466 ORTHO05D002463 1.6e-35 152.9 121 57.9
THA.LOC104801548 Tarenaya hassleriana HOM05D007466 ORTHO05D002463 1.6e-35 152.9 121 59.5
Sc06g0006090 Simmondsia chinensis HOM05D007466 ORTHO05D002463 4.5e-35 151.4 118 59.3
BraA05t20253Z Brassica rapa HOM05D007466 ORTHO05D002463 5.9e-35 151.0 119 59.7
MELO3C018805.2 Cucumis melo HOM05D007466 ORTHO05D002463 5.9e-35 151.0 123 58.5
Thhalv10017634m.g Eutrema salsugineum HOM05D007466 ORTHO05D002463 5.9e-35 151.0 121 57.0
BcaC02g11328 Brassica carinata HOM05D007466 ORTHO05D002463 7.8e-35 150.6 119 58.8
A05p13150 Brassica napus HOM05D007466 ORTHO05D002463 7.8e-35 150.6 119 58.8
C04p17280 Brassica napus HOM05D007466 ORTHO05D002463 7.8e-35 150.6 119 58.8
BolC4t23280H Brassica oleracea HOM05D007466 ORTHO05D002463 7.8e-35 150.6 119 58.8
Sed0014854 Sechium edule HOM05D007466 ORTHO05D002463 7.8e-35 150.6 117 59.0
AT2G32350 Arabidopsis thaliana HOM05D007466 ORTHO05D002463 1.3e-34 149.8 119 57.1
BcaB02g10474 Brassica carinata HOM05D007466 ORTHO05D002463 1.3e-34 149.8 119 58.0
MD01G1026100 Malus domestica HOM05D007466 ORTHO05D002463 1.3e-34 149.8 121 57.0
Aqoxy4G01992 Aquilegia oxysepala HOM05D007466 ORTHO05D002463 5.0e-34 147.9 117 57.3
AL125U10032 Arabidopsis lyrata HOM05D007466 ORTHO05D002463 5.0e-34 147.9 119 57.1
Sp4g14720 Schrenkiella parvula HOM05D007466 ORTHO05D002463 5.0e-34 147.9 119 57.1
Thhalv10002923m.g Eutrema salsugineum HOM05D007466 ORTHO05D002463 6.6e-34 147.5 119 55.5
Aa31LG5G4650 Aethionema arabicum HOM05D000219 ORTHO05D004649 8.6e-34 147.1 119 57.1
Manes.13G072500 Manihot esculenta HOM05D007466 ORTHO05D002463 1.5e-33 146.4 122 56.6
Carub.0004s1370 Capsella rubella HOM05D007466 ORTHO05D002463 7.3e-33 144.1 119 55.5
PGR042G2713 Punica granatum HOM05D007466 ORTHO05D002463 1.6e-32 142.9 117 53.0
RcHm_v2.0_Chr2g0126891 Rosa chinensis HOM05D007466 ORTHO05D002463 8.3e-29 130.6 90 64.4
Nn1g07029 Nelumbo nucifera HOM05D007466 ORTHO05D002463 1.4e-28 129.8 119 56.3
PSO541G5792 Papaver somniferum HOM05D007466 ORTHO05D002463 1.8e-28 129.4 119 51.3
PSO675G1565 Papaver somniferum HOM05D007466 ORTHO05D002463 1.8e-28 129.4 119 51.3
MBI02_g19288_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D008499 3.5e-27 125.2 112 55.4
Rhsim06G0158800 Rhododendron simsii HOM05D007466 ORTHO05D002463 8.6e-26 120.6 121 56.2
SGA_v2.0_scaffold49G18335 Striga asiatica HOM05D003065 ORTHO05D003802 3.6e-24 115.2 114 50.9
SHI54719 Sapria himalayana HOM05D007466 ORTHO05D002463 2.0e-22 109.4 116 46.6
unitig_578.g16773 Utricularia gibba HOM05D007466 ORTHO05D002463 4.4e-22 108.2 115 45.2
Hma1.2p1_0249F.1_g102440 Hydrangea macrophylla HOM05D007466 ORTHO05D002463 1.3e-18 96.7 63 71.4
Hma1.2p1_2032F.1_g311833 Hydrangea macrophylla HOM05D007466 ORTHO05D002463 1.3e-18 96.7 63 71.4
CDE05G0337 Ceratophyllum demersum HOM05D007466 ORTHO05D002463 1.2e-14 83.6 108 41.7
MBI02_g22101_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D002463 2.6e-14 82.4 62 59.7
MBI02_g21870_MAGBIO Magnolia biondii HOM05D003286 ORTHO05D002463 4.1e-12 75.1 122 36.1
Duzib235G0679 Durio zibethinus HOM05D003286 ORTHO05D002463 1.5e-09 66.6 128 35.9
Cpa.g.sc198.10 Carica papaya HOM05D003286 ORTHO05D002463 1.9e-09 66.2 121 38.8
AL4G27734 Arabidopsis lyrata HOM05D007466 ORTHO05D002463 1.2e-08 63.5 57 50.9
Glyma.13G153900 Glycine max HOM05D003286 ORTHO05D002463 1.2e-08 63.5 120 35.8
CAN.G222.170 Capsicum annuum HOM05D003286 ORTHO05D002463 2.1e-08 62.8 136 30.9
Thecc.10G122300 Theobroma cacao HOM05D003286 ORTHO05D002463 2.1e-08 62.8 128 33.6
Peaxi162Scf00063g00244 Petunia axillaris HOM05D003286 ORTHO05D002463 3.6e-08 62.0 130 32.3
Glyma.U031417 Glycine max HOM05D003286 ORTHO05D002463 4.7e-08 61.6 93 38.7
Medtr3g080180 Medicago truncatula HOM05D003286 ORTHO05D002463 8.1e-08 60.8 117 35.9
TPR.G34503 Trifolium pratense HOM05D003286 ORTHO05D002463 8.1e-08 60.8 89 38.2
DCAR_030615 Daucus carota HOM05D003286 ORTHO05D002463 1.1e-07 60.5 135 32.6
Cc07_g12950 Coffea canephora HOM05D003286 ORTHO05D002463 1.4e-07 60.1 129 32.6
FAN24G2961 Fragaria x ananassa HOM05D003286 ORTHO05D002463 1.4e-07 60.1 128 32.8
VMungo0251G0596 Vigna mungo HOM05D003286 ORTHO05D002463 1.8e-07 59.7 120 35.0
Aqoxy1G02958 Aquilegia oxysepala HOM05D003286 ORTHO05D002463 2.3e-07 59.3 128 31.2
Phvul.002G250900 Phaseolus vulgaris HOM05D003286 ORTHO05D002463 2.3e-07 59.3 120 34.2
Prupe.4G026000 Prunus persica HOM05D003286 ORTHO05D002463 2.3e-07 59.3 134 33.6
THA.LOC104806256 Tarenaya hassleriana HOM05D003286 ORTHO05D002463 2.3e-07 59.3 94 35.1
BcaC04g21387 Brassica carinata HOM05D003286 ORTHO05D002463 3.1e-07 58.9 88 37.5
A08p17100 Brassica napus HOM05D003286 ORTHO05D002463 3.1e-07 58.9 88 37.5
A09p25500 Brassica napus HOM05D003286 ORTHO05D002463 3.1e-07 58.9 88 37.5
C09p32410 Brassica napus HOM05D003286 ORTHO05D002463 3.1e-07 58.9 88 37.5
BolC9t56086H Brassica oleracea HOM05D003286 ORTHO05D002463 3.1e-07 58.9 88 37.5
BraA08t33672Z Brassica rapa HOM05D003286 ORTHO05D002463 3.1e-07 58.9 88 37.5
BraA09t38125Z Brassica rapa HOM05D003286 ORTHO05D002463 3.1e-07 58.9 88 37.5
COL.COLO4_31727 Corchorus olitorius HOM05D003286 ORTHO05D002463 3.1e-07 58.9 89 39.3
Nn1g03635 Nelumbo nucifera HOM05D003286 ORTHO05D002463 3.1e-07 58.9 155 28.4
CANSAT56G4121 Cannabis sativa HOM05D003286 ORTHO05D002463 4.0e-07 58.5 122 33.6
Migut.K01114 Erythranthe guttata HOM05D003286 ORTHO05D002463 4.0e-07 58.5 67 43.3
BcaC01g00928 Brassica carinata HOM05D003286 ORTHO05D002463 6.8e-07 57.8 88 36.4
C03p86020 Brassica napus HOM05D003286 ORTHO05D002463 6.8e-07 57.8 88 36.4
BolC3t20894H Brassica oleracea HOM05D003286 ORTHO05D002463 6.8e-07 57.8 88 36.4
Manes.17G035100 Manihot esculenta HOM05D003286 ORTHO05D002463 6.8e-07 57.8 128 33.6
QL05p075142 Quercus lobata HOM05D003286 ORTHO05D002463 6.8e-07 57.8 89 40.4
QL93p0073_0716 Quercus lobata HOM05D003286 ORTHO05D002463 6.8e-07 57.8 89 40.4
C02p39730 Brassica napus HOM05D003286 ORTHO05D002463 8.9e-07 57.4 71 40.8
Hma1.2p1_0158F.1_g069790 Hydrangea macrophylla HOM05D003286 ORTHO05D002463 8.9e-07 57.4 133 32.3
Lj1P1225T26 Lonicera japonica HOM05D003286 ORTHO05D002463 8.9e-07 57.4 71 43.7
RcHm_v2.0_Chr5g0003951 Rosa chinensis HOM05D003286 ORTHO05D002463 8.9e-07 57.4 128 33.6
BcaB01g01895 Brassica carinata HOM05D003286 ORTHO05D002463 1.2e-06 57.0 88 36.4
Carub.0006s3317 Capsella rubella HOM05D003286 ORTHO05D002463 1.2e-06 57.0 71 40.8
Cfa000276 Carpinus fangiana HOM05D003286 ORTHO05D002463 1.2e-06 57.0 119 31.1
Sabra04G0012200 Salix brachista HOM05D003286 ORTHO05D002463 1.2e-06 57.0 125 32.0
Sp6g02990 Schrenkiella parvula HOM05D003286 ORTHO05D002463 1.2e-06 57.0 71 40.8
Carub.0006s3413 Capsella rubella HOM05D003286 ORTHO05D002463 1.5e-06 56.6 88 38.6
CiPaw.09G087100 Carya illinoinensis HOM05D003286 ORTHO05D002463 1.5e-06 56.6 129 31.8
Ciclev10018056m.g Citrus clementina HOM05D003286 ORTHO05D002463 1.5e-06 56.6 127 31.5
Eucgr.E03707 Eucalyptus grandis HOM05D003286 ORTHO05D002463 1.5e-06 56.6 123 30.9
Eucgr.F00162 Eucalyptus grandis HOM05D003286 ORTHO05D002463 1.5e-06 56.6 125 30.4
Solyc11g011900.1 Solanum lycopersicum HOM05D003286 ORTHO05D002463 1.5e-06 56.6 140 29.3
CDE04G2878 Ceratophyllum demersum HOM05D003286 ORTHO05D002463 2.0e-06 56.2 121 28.9
AUR62020422 Chenopodium quinoa HOM05D003286 ORTHO05D002463 2.0e-06 56.2 129 29.5
Ca_16278_v3 Cicer arietinum L. HOM05D000120 ORTHO05D002463 2.0e-06 56.2 71 43.7
Thhalv10028963m.g Eutrema salsugineum HOM05D003286 ORTHO05D002463 2.0e-06 56.2 71 39.4
Manes.17G035200 Manihot esculenta HOM05D003286 ORTHO05D002463 2.0e-06 56.2 128 32.0
Potri.004G022400 Populus trichocarpa HOM05D003286 ORTHO05D002463 2.0e-06 56.2 88 38.6
BcaC03g16191 Brassica carinata HOM05D003286 ORTHO05D002463 2.6e-06 55.8 42 54.8
FvH4_2g19820 Fragaria vesca HOM05D003286 ORTHO05D002463 2.6e-06 55.8 130 32.3
Manes.16G012200 Manihot esculenta HOM05D003286 ORTHO05D002463 2.6e-06 55.8 118 34.7
FAN15G1751 Fragaria x ananassa HOM05D003286 ORTHO05D002463 3.4e-06 55.5 126 32.5
CARHR251320 Cardamine hirsuta HOM05D003286 ORTHO05D002463 4.4e-06 55.1 71 39.4
CARHR252330 Cardamine hirsuta HOM05D003286 ORTHO05D002463 4.4e-06 55.1 71 39.4
Duzib160G0656 Durio zibethinus HOM05D003286 ORTHO05D002463 4.4e-06 55.1 99 36.4
MD10G1314800 Malus domestica HOM05D003286 ORTHO05D002463 4.4e-06 55.1 72 40.3
unitig_32.g10728 Utricularia gibba HOM05D003286 ORTHO05D002463 4.4e-06 55.1 84 38.1
Aa31sc199G10 Aethionema arabicum HOM05D003286 ORTHO05D002463 5.8e-06 54.7 89 36.0
AL6G48830 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 5.8e-06 54.7 71 38.0
AUR62015794 Chenopodium quinoa HOM05D003286 ORTHO05D002463 5.8e-06 54.7 129 29.5
Gohir.A10G211300 Gossypium hirsutum HOM05D003286 ORTHO05D002463 5.8e-06 54.7 71 40.8
Gohir.D10G015100 Gossypium hirsutum HOM05D003286 ORTHO05D002463 5.8e-06 54.7 71 40.8
Gorai.011G016700 Gossypium raimondii HOM05D003286 ORTHO05D002463 5.8e-06 54.7 71 40.8
Lj2g0008596 Lotus japonicus HOM05D003286 ORTHO05D002463 7.6e-06 54.3 71 39.4
Nn1g08164 Nelumbo nucifera HOM05D003286 ORTHO05D002463 7.6e-06 54.3 60 43.3
Rhsim10G0183400 Rhododendron simsii HOM05D003286 ORTHO05D002463 7.6e-06 54.3 121 33.1
Psat5g122680 Pisum sativum HOM05D003286 ORTHO05D002463 9.9e-06 53.9 89 37.1
Thecc.06G214200 Theobroma cacao HOM05D003286 ORTHO05D002463 9.9e-06 53.9 71 40.8


User provided reference genes

Program Settings