Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1C74T17 Lonicera japonica HOM05D000834 ORTHO05D006956 4.4e-228 794.3 400 100.0
Actinidia09509 Actinidia chinensis HOM05D000834 ORTHO05D006956 1.7e-195 686.0 396 84.6
Prupe.8G214700 Prunus persica HOM05D000834 ORTHO05D006956 7.1e-194 680.6 400 84.5
Migut.D00483 Erythranthe guttata HOM05D000834 ORTHO05D006956 1.2e-193 679.9 396 84.8
GSVIVG01028438001 Vitis vinifera HOM05D000834 ORTHO05D006956 1.2e-193 679.9 400 83.5
Potri.002G255900 Populus trichocarpa HOM05D000834 ORTHO05D006956 3.5e-193 678.3 400 83.2
Cfa002491 Carpinus fangiana HOM05D000834 ORTHO05D006956 4.6e-193 677.9 401 84.3
Manes.13G039100 Manihot esculenta HOM05D000834 ORTHO05D006956 4.6e-193 677.9 400 84.5
Haze_24714 Corylus avellana HOM05D000834 ORTHO05D006956 2.3e-192 675.6 401 83.8
Gorai.007G150200 Gossypium raimondii HOM05D000834 ORTHO05D006956 2.3e-192 675.6 401 83.5
Gohir.D11G140000 Gossypium hirsutum HOM05D000834 ORTHO05D006956 1.5e-191 672.9 401 83.5
Rhsim01G0259900 Rhododendron simsii HOM05D000834 ORTHO05D006956 4.3e-191 671.4 424 79.2
Duzib138G0050 Durio zibethinus HOM05D000834 ORTHO05D006956 7.4e-191 670.6 401 83.0
Gohir.A11G133900 Gossypium hirsutum HOM05D000834 ORTHO05D006956 7.4e-191 670.6 401 82.8
Manes.12G038400 Manihot esculenta HOM05D000834 ORTHO05D006956 9.6e-191 670.2 400 83.0
Potri.014G193300 Populus trichocarpa HOM05D000834 ORTHO05D006956 2.1e-190 669.1 400 84.0
CiPaw.03G271600 Carya illinoinensis HOM05D000834 ORTHO05D006956 2.8e-190 668.7 401 82.8
RcHm_v2.0_Chr6g0286481 Rosa chinensis HOM05D000834 ORTHO05D006956 2.8e-190 668.7 400 83.5
CSS0050145 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 3.7e-190 668.3 400 82.8
MD10G1175400 Malus domestica HOM05D000834 ORTHO05D006956 1.4e-189 666.4 400 82.2
arahy.Tifrunner.gnm1.ann1.WYWU3M Arachis hypogaea HOM05D000834 ORTHO05D006956 1.8e-189 666.0 400 82.0
Sabra02G0194500 Salix brachista HOM05D000834 ORTHO05D006956 1.8e-189 666.0 400 82.0
CSS0037788 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 3.1e-189 665.2 405 82.0
FvH4_2g20370 Fragaria vesca HOM05D000834 ORTHO05D006956 4.0e-189 664.8 400 83.2
MD05G1187700 Malus domestica HOM05D000834 ORTHO05D006956 5.3e-189 664.5 400 81.5
arahy.Tifrunner.gnm1.ann1.G250MW Arachis hypogaea HOM05D000834 ORTHO05D006956 6.9e-189 664.1 400 81.8
Oeu052085.1 Olea europaea HOM05D000834 ORTHO05D006956 9.0e-189 663.7 398 83.4
PSO832G2974 Papaver somniferum HOM05D000834 ORTHO05D006956 9.0e-189 663.7 400 81.2
Thecc.01G249300 Theobroma cacao HOM05D000834 ORTHO05D006956 1.2e-188 663.3 401 81.8
Nn1g03003 Nelumbo nucifera HOM05D000834 ORTHO05D006956 2.0e-188 662.5 392 84.7
FAN24G3261 Fragaria x ananassa HOM05D000834 ORTHO05D006956 2.6e-188 662.1 401 83.3
PGR044G1351 Punica granatum HOM05D000834 ORTHO05D006956 2.6e-188 662.1 400 82.2
Lj5g0006902 Lotus japonicus HOM05D000834 ORTHO05D006956 3.4e-188 661.8 400 81.5
Hund05490 Selenicereus undatus HOM05D000834 ORTHO05D006956 4.5e-188 661.4 400 81.8
TWI12G0869 Tripterygium wilfordii HOM05D000834 ORTHO05D006956 1.0e-187 660.2 400 80.0
MSTRG.18357 Avicennia marina HOM05D000834 ORTHO05D006956 1.3e-187 659.8 399 81.5
Lsat_1_v5_gn_5_181100 Lactuca sativa HOM05D000834 ORTHO05D006956 2.9e-187 658.7 400 81.8
Glyma.13G127400 Glycine max HOM05D000834 ORTHO05D006956 4.9e-187 657.9 400 81.0
PSO764G0197 Papaver somniferum HOM05D000834 ORTHO05D006956 4.9e-187 657.9 400 80.2
VMungo0720G2048 Vigna mungo HOM05D000834 ORTHO05D006956 8.4e-187 657.1 400 80.5
Sc05g0002850 Simmondsia chinensis HOM05D000834 ORTHO05D006956 1.9e-186 656.0 396 81.8
Phvul.007G153700 Phaseolus vulgaris HOM05D000834 ORTHO05D006956 4.2e-186 654.8 397 80.6
Cc01_g17740 Coffea canephora HOM05D000834 ORTHO05D006956 9.3e-186 653.7 419 77.8
COL.COLO4_02902 Corchorus olitorius HOM05D000834 ORTHO05D006956 3.5e-185 651.7 401 81.3
TAR362G0351 Trochodendron aralioides HOM05D000834 ORTHO05D006956 3.5e-185 651.7 400 80.5
TPR.G5902 Trifolium pratense HOM05D000834 ORTHO05D006956 6.0e-185 651.0 400 80.5
FAN15G3585 Fragaria x ananassa HOM05D000834 ORTHO05D006956 1.0e-184 650.2 393 82.2
CsaV3_6G007320 Cucumis sativus L. HOM05D000834 ORTHO05D006956 9.6e-183 643.7 402 79.6
HanXRQChr01g0014941 Helianthus annuus HOM05D000834 ORTHO05D006956 1.6e-182 642.9 400 79.0
Medtr1g069455 Medicago truncatula HOM05D000834 ORTHO05D006956 1.6e-182 642.9 400 79.0
QL09p041638 Quercus lobata HOM05D000834 ORTHO05D006956 1.6e-182 642.9 402 79.9
ClCG06G001380 Citrullus lanatus HOM05D000834 ORTHO05D006956 2.8e-182 642.1 401 80.3
Sopen09g025590 Solanum pennellii HOM05D000834 ORTHO05D006956 6.2e-182 641.0 407 79.4
Sed0018887 Sechium edule HOM05D000834 ORTHO05D006956 8.2e-182 640.6 401 79.8
ATR0787G052 Amborella trichopoda HOM05D000834 ORTHO05D006956 1.4e-181 639.8 398 81.2
CANSAT01G0496 Cannabis sativa HOM05D000834 ORTHO05D006956 2.4e-181 639.0 397 78.8
CANSAT01G1591 Cannabis sativa HOM05D000834 ORTHO05D006956 2.4e-181 639.0 397 78.8
Solyc09g064450.3 Solanum lycopersicum HOM05D000834 ORTHO05D006956 3.1e-181 638.6 407 79.1
SGA_v2.0_scaffold1G00665 Striga asiatica HOM05D000121 ORTHO05D000102 5.3e-181 637.9 406 79.6
Eucgr.K01422 Eucalyptus grandis HOM05D000834 ORTHO05D006956 2.0e-180 636.0 400 79.5
Peaxi162Scf00043g00251 Petunia axillaris HOM05D000834 ORTHO05D006956 3.4e-180 635.2 406 79.6
THA.LOC104814534 Tarenaya hassleriana HOM05D000834 ORTHO05D006956 5.8e-180 634.4 403 77.7
Lalb_Chr02g0152761 Lupinus albus HOM05D000834 ORTHO05D006956 7.6e-180 634.0 401 79.1
Psat6g062480 Pisum sativum HOM05D000834 ORTHO05D006956 7.6e-180 634.0 400 78.5
AUR62025434 Chenopodium quinoa HOM05D000834 ORTHO05D006956 1.3e-179 633.3 398 78.9
Cpa.g.sc87.39 Carica papaya HOM05D000834 ORTHO05D006956 6.5e-179 630.9 432 74.3
Atru.chr5.1869 Acer truncatum HOM05D000834 ORTHO05D006956 8.4e-179 630.6 401 77.6
MBI07_g22384_MAGBIO Magnolia biondii HOM05D000834 ORTHO05D006956 1.1e-178 630.2 367 85.0
Ciclev10020464m.g Citrus clementina HOM05D000834 ORTHO05D006956 1.2e-177 626.7 401 75.8
Aa31LG8G17350 Aethionema arabicum HOM05D000834 ORTHO05D006956 4.6e-177 624.8 403 76.7
SalBow4G1359 Salvia bowleyana HOM05D000834 ORTHO05D006956 4.6e-177 624.8 496 66.5
DCAR_004694 Daucus carota HOM05D000834 ORTHO05D006956 6.1e-177 624.4 400 78.0
Aqoxy5G00122 Aquilegia oxysepala HOM05D000834 ORTHO05D006956 3.9e-176 621.7 398 76.6
Sp3g33600 Schrenkiella parvula HOM05D000834 ORTHO05D006956 1.5e-175 619.8 401 76.3
THA.LOC104820067 Tarenaya hassleriana HOM05D000834 ORTHO05D006956 1.5e-175 619.8 403 76.7
CDE09G1390 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 1.9e-175 619.4 392 78.3
BraA09t41279Z Brassica rapa HOM05D000834 ORTHO05D006956 2.5e-175 619.0 401 76.1
BcaC04g22796 Brassica carinata HOM05D000834 ORTHO05D006956 3.3e-175 618.6 401 75.8
BolC9t54430H Brassica oleracea HOM05D000834 ORTHO05D006956 3.3e-175 618.6 401 75.8
AT2G20360 Arabidopsis thaliana HOM05D000834 ORTHO05D006956 9.7e-175 617.1 403 75.2
AL3G53320 Arabidopsis lyrata HOM05D000834 ORTHO05D006956 1.3e-174 616.7 403 74.9
BcaC07g41219 Brassica carinata HOM05D000834 ORTHO05D006956 1.3e-174 616.7 402 75.9
Lalb_Chr06g0170741 Lupinus albus HOM05D000834 ORTHO05D006956 2.2e-174 615.9 401 76.6
BcaB07g31592 Brassica carinata HOM05D000834 ORTHO05D006956 2.8e-174 615.5 401 75.6
Nitab4.5_0002435g0060 Nicotiana tabacum HOM05D000834 ORTHO05D006956 3.7e-174 615.1 443 71.1
BolC8t51785H Brassica oleracea HOM05D000834 ORTHO05D006956 4.8e-174 614.8 401 75.8
Carub.0003s3474 Capsella rubella HOM05D000834 ORTHO05D006956 4.8e-174 614.8 403 74.9
Nitab4.5_0000385g0020 Nicotiana tabacum HOM05D000834 ORTHO05D006956 6.3e-174 614.4 442 71.5
BraA07t27827Z Brassica rapa HOM05D000834 ORTHO05D006956 1.8e-173 612.8 401 75.3
A09p12840 Brassica napus HOM05D000834 ORTHO05D006956 5.3e-173 611.3 379 78.1
A09p58940 Brassica napus HOM05D000834 ORTHO05D006956 5.3e-173 611.3 380 78.4
A07p00360 Brassica napus HOM05D000834 ORTHO05D000909 6.9e-173 610.9 400 75.2
Ah.08g213640 Amaranthus hybridus HOM05D000834 ORTHO05D006956 1.2e-172 610.1 363 83.2
BcaB08g34904 Brassica carinata HOM05D000834 ORTHO05D006956 1.2e-172 610.1 401 75.6
unitig_22.g6307 Utricularia gibba HOM05D000834 ORTHO05D006956 1.2e-172 610.1 400 77.8
C08p42260 Brassica napus HOM05D000834 ORTHO05D006956 1.5e-172 609.8 380 78.2
C09p15230 Brassica napus HOM05D000834 ORTHO05D006956 1.5e-172 609.8 379 77.8
CSS0005533 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 1.5e-172 609.8 452 71.9
CARHR110880 Cardamine hirsuta HOM05D000834 ORTHO05D006956 2.0e-172 609.4 403 74.2
MELO3C022394.2 Cucumis melo HOM05D000834 ORTHO05D006956 2.0e-172 609.4 419 73.7
vmacro14792 Vaccinium macrocarpon HOM05D000834 ORTHO05D006956 7.7e-172 607.4 553 60.2
BcaC06g36723 Brassica carinata HOM05D000834 ORTHO05D006956 1.7e-171 606.3 401 74.6
C07p00720 Brassica napus HOM05D000834 ORTHO05D006956 2.9e-171 605.5 400 74.8
Thhalv10002002m.g Eutrema salsugineum HOM05D000834 ORTHO05D006956 3.8e-171 605.1 401 74.3
BolC7t40517H Brassica oleracea HOM05D000834 ORTHO05D006956 6.5e-171 604.4 400 74.5
BraA09t36931Z Brassica rapa HOM05D000834 ORTHO05D006956 1.9e-170 602.8 391 76.2
Os02g0816800 Oryza sativa ssp. japonica HOM05D000834 ORTHO05D006956 2.5e-167 592.4 381 78.2
HPP92_020769 Vanilla planifolia HOM05D000834 ORTHO05D006956 5.7e-167 591.3 395 73.7
Ca_09644_v3 Cicer arietinum L. HOM05D000834 ORTHO05D006956 1.3e-166 590.1 417 72.4
BcaB03g16828 Brassica carinata HOM05D000834 ORTHO05D006956 5.5e-162 574.7 401 72.3
FAN27G0744 Fragaria x ananassa HOM05D000834 ORTHO05D006956 5.5e-162 574.7 353 81.9
SEGI_11456 Sequoiadendron giganteum HOM05D000834 ORTHO05D006956 1.5e-159 566.6 387 71.3
CDE02G1088 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 5.3e-149 531.6 327 80.4
Dinv19263 Davidia involucrata HOM05D000834 ORTHO05D006956 1.1e-146 523.9 292 87.0
AUR62008805 Chenopodium quinoa HOM05D000834 ORTHO05D006956 5.2e-144 515.0 311 79.7
CAN.G536.3 Capsicum annuum HOM05D000834 ORTHO05D006956 1.1e-141 507.3 321 81.3
ECA248G1156 Erigeron canadensis HOM05D000121 ORTHO05D000102 2.8e-134 482.6 278 84.5
SalBow6G5988 Salvia bowleyana HOM05D000834 ORTHO05D006956 1.2e-129 467.2 343 72.3
AagrBONN_evm.TU.Sc2ySwM_368.182 Anthoceros agrestis HOM05D000834 ORTHO05D006956 3.7e-118 429.1 393 56.7
Pp3c14_9070 Physcomitrium patens HOM05D000834 ORTHO05D006956 7.8e-116 421.4 355 56.1
Mapoly0051s0097 Marchantia polymorpha HOM05D000834 ORTHO05D006956 1.5e-114 417.2 384 54.7
Zm00001eb258880 Zea mays HOM05D000834 ORTHO05D006956 4.3e-114 415.6 246 82.9
CBR_g12802 Chara braunii HOM05D000834 ORTHO05D006956 1.1e-109 401.0 340 55.6
Actinidia23703 Actinidia chinensis HOM05D000834 ORTHO05D006956 8.9e-104 381.3 236 82.2
SMO119G0351 Selaginella moellendorffii HOM05D000834 ORTHO05D006956 3.0e-99 366.3 349 52.7
MD15G1374200 Malus domestica HOM05D000834 ORTHO05D006956 2.1e-89 333.6 226 74.3
Pp3c1_35920 Physcomitrium patens HOM05D000834 ORTHO05D006956 1.1e-82 311.2 284 50.7
MCO13G055 Micromonas commoda HOM05D000834 ORTHO05D006956 3.2e-77 293.1 388 42.5
PRCOL_00005891 Prasinoderma coloniale HOM05D000834 ORTHO05D006956 1.1e-64 251.5 365 37.8
Dinv43064 Davidia involucrata HOM05D000834 ORTHO05D006956 9.0e-64 248.4 239 59.4
SHI26743 Sapria himalayana HOM05D000834 ORTHO05D006956 1.9e-61 240.7 205 64.4
Cre10.g434450 Chlamydomonas reinhardtii HOM05D000834 ORTHO05D006956 5.1e-59 232.6 350 39.7
Oeu015439.4 Olea europaea HOM05D000121 ORTHO05D000102 8.2e-57 225.3 262 51.5
SEGI_20632 Sequoiadendron giganteum HOM05D000834 ORTHO05D006956 3.1e-56 223.4 160 73.1
Gohir.A13G077301 Gossypium hirsutum HOM05D000834 ORTHO05D006956 4.2e-45 186.4 99 91.9
Gohir.A12G044900 Gossypium hirsutum HOM05D000751 ORTHO05D000889 2.8e-33 147.1 80 87.5
Gohir.A01G059200 Gossypium hirsutum HOM05D000751 ORTHO05D000889 3.7e-33 146.7 82 86.6
vmacro08769 Vaccinium macrocarpon HOM05D000834 ORTHO05D006956 3.5e-31 140.2 132 59.8
CDE02G0223 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 1.3e-25 121.7 81 74.1
BcaB02g11316 Brassica carinata HOM05D000834 ORTHO05D000693 3.6e-20 103.6 96 59.4
vmacro08768 Vaccinium macrocarpon HOM05D000834 ORTHO05D426596 6.1e-20 102.8 65 75.4
SHI26740 Sapria himalayana HOM05D000834 ORTHO05D006956 4.4e-18 96.7 105 46.7
Lsat_1_v5_gn_8_148040 Lactuca sativa HOM05D000834 ORTHO05D006956 4.0e-11 73.6 53 66.0
CiPaw.05G147100 Carya illinoinensis HOM05D000834 ORTHO05D006956 5.4e-08 63.2 42 73.8
Dinv43063 Davidia involucrata HOM05D000834 ORTHO05D183077 3.5e-07 60.5 30 93.3
Lsat_1_v5_gn_7_90061 Lactuca sativa HOM05D000834 ORTHO05D001119 3.5e-07 60.5 37 73.0
C09p57810 Brassica napus HOM05D006883 ORTHO05D008624 5.9e-07 59.7 259 23.9
BcaB08g36654 Brassica carinata HOM05D006883 ORTHO05D008624 1.3e-06 58.5 261 25.3
SEGI_20295 Sequoiadendron giganteum HOM05D006883 ORTHO05D008624 2.3e-06 57.8 255 25.5
A10p20920 Brassica napus HOM05D006883 ORTHO05D008624 3.0e-06 57.4 260 23.8
BcaC04g18657 Brassica carinata HOM05D006883 ORTHO05D008624 3.9e-06 57.0 254 24.0
BolC9t58650H Brassica oleracea HOM05D006883 ORTHO05D008624 3.9e-06 57.0 254 24.0
Sp6g25680 Schrenkiella parvula HOM05D006883 ORTHO05D008624 3.9e-06 57.0 282 22.7
BraA10t44156Z Brassica rapa HOM05D006883 ORTHO05D008624 8.6e-06 55.8 260 23.5
Lalb_Chr15g0087031 Lupinus albus HOM05D006883 ORTHO05D008624 8.6e-06 55.8 257 24.5


User provided reference genes

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