Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1C736G5 Lonicera japonica HOM05D004263 ORTHO05D004931 0.0e+00 1485.7 742 100.0
DCAR_009724 Daucus carota HOM05D004263 ORTHO05D004931 0.0e+00 1222.2 761 81.7
Hma1.2p1_0565F.1_g179560 Hydrangea macrophylla HOM05D004263 ORTHO05D004931 0.0e+00 1216.4 762 81.5
Hma1.2p1_0565F.1_g179570 Hydrangea macrophylla HOM05D004263 ORTHO05D004931 0.0e+00 1216.4 762 81.5
Actinidia39296 Actinidia chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1206.4 761 80.7
TAR627G0082 Trochodendron aralioides HOM05D004263 ORTHO05D004931 0.0e+00 1203.7 762 80.2
TWI75G0058 Tripterygium wilfordii HOM05D004263 ORTHO05D004931 0.0e+00 1202.2 761 80.3
CSS0035503 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1200.7 762 80.3
Rhsim04G0063000 Rhododendron simsii HOM05D004263 ORTHO05D004931 0.0e+00 1199.9 762 80.3
Manes.12G082900 Manihot esculenta HOM05D004263 ORTHO05D004931 0.0e+00 1197.2 761 79.8
Ciclev10014147m.g Citrus clementina HOM05D004263 ORTHO05D004931 0.0e+00 1194.9 760 79.9
CSS0035062 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1191.8 763 80.1
CiPaw.03G169700 Carya illinoinensis HOM05D004263 ORTHO05D004931 0.0e+00 1191.0 761 79.6
CSS0002238 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1189.1 771 79.1
Solyc06g005080.4 Solanum lycopersicum HOM05D004263 ORTHO05D004931 0.0e+00 1182.9 761 79.0
Gohir.A01G015400 Gossypium hirsutum HOM05D004263 ORTHO05D004931 0.0e+00 1182.2 761 78.4
PGR142G2990 Punica granatum HOM05D004263 ORTHO05D004931 0.0e+00 1182.2 761 79.0
GSVIVG01030005001 Vitis vinifera HOM05D004263 ORTHO05D004931 0.0e+00 1181.0 762 79.5
QL08p037295 Quercus lobata HOM05D004263 ORTHO05D004931 0.0e+00 1180.2 761 79.2
Thecc.02G171500 Theobroma cacao HOM05D004263 ORTHO05D004931 0.0e+00 1179.5 761 79.0
SGA_v2.0_scaffold90G27889 Striga asiatica HOM05D004263 ORTHO05D004931 0.0e+00 1178.7 764 78.7
Gohir.D01G015400 Gossypium hirsutum HOM05D004263 ORTHO05D004931 0.0e+00 1177.2 761 78.4
Cpa.g.sc34.88 Carica papaya HOM05D004263 ORTHO05D004931 0.0e+00 1176.0 762 78.6
COL.COLO4_13682 Corchorus olitorius HOM05D004263 ORTHO05D004931 0.0e+00 1175.6 764 78.4
Nn2g15850 Nelumbo nucifera HOM05D004263 ORTHO05D004931 0.0e+00 1175.6 762 78.9
Peaxi162Scf00255g01022 Petunia axillaris HOM05D004263 ORTHO05D004931 0.0e+00 1175.6 762 78.7
Gorai.002G017100 Gossypium raimondii HOM05D004263 ORTHO05D004931 0.0e+00 1175.2 761 78.2
Sopen06g001070 Solanum pennellii HOM05D004263 ORTHO05D004931 0.0e+00 1174.5 761 78.4
vmacro09293 Vaccinium macrocarpon HOM05D004263 ORTHO05D004931 0.0e+00 1174.1 791 76.9
Actinidia30490 Actinidia chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1173.3 738 80.9
Potri.013G147600 Populus trichocarpa HOM05D004263 ORTHO05D004931 0.0e+00 1173.3 762 79.0
Prupe.3G231000 Prunus persica HOM05D004263 ORTHO05D004931 0.0e+00 1172.5 762 78.5
Cc04_g12270 Coffea canephora HOM05D004263 ORTHO05D004931 0.0e+00 1172.1 761 78.4
Eucgr.K00914 Eucalyptus grandis HOM05D004263 ORTHO05D004931 0.0e+00 1171.8 761 78.7
CANSAT64G2398 Cannabis sativa HOM05D004263 ORTHO05D004931 0.0e+00 1169.8 760 78.3
Sabra13G0119200 Salix brachista HOM05D004263 ORTHO05D004931 0.0e+00 1166.4 762 79.0
ECA246G4434 Erigeron canadensis HOM05D004263 ORTHO05D004931 0.0e+00 1163.7 758 78.2
CSS0005038 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1163.3 770 78.1
MSTRG.11470 Avicennia marina HOM05D004263 ORTHO05D004931 0.0e+00 1162.9 760 77.8
RcHm_v2.0_Chr2g0161771 Rosa chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1162.1 761 78.6
Haze_13086 Corylus avellana HOM05D004263 ORTHO05D004931 0.0e+00 1161.0 798 74.9
FvH4_6g44560 Fragaria vesca HOM05D004263 ORTHO05D004931 0.0e+00 1158.7 762 77.8
MD14G1065300 Malus domestica HOM05D004263 ORTHO05D004931 0.0e+00 1158.7 763 77.7
Cfa010655 Carpinus fangiana HOM05D004263 ORTHO05D004931 0.0e+00 1158.3 761 77.4
FAN14G1228 Fragaria x ananassa HOM05D004263 ORTHO05D004931 0.0e+00 1156.4 762 77.6
Migut.O00120 Erythranthe guttata HOM05D004263 ORTHO05D004931 0.0e+00 1155.6 761 77.8
FAN02G3638 Fragaria x ananassa HOM05D004263 ORTHO05D004931 0.0e+00 1151.7 762 77.4
MD17G1084700 Malus domestica HOM05D004263 ORTHO05D004931 0.0e+00 1149.8 762 77.3
Lalb_Chr22g0356351 Lupinus albus HOM05D004263 ORTHO05D004931 0.0e+00 1148.7 764 76.4
Aqoxy1G01192 Aquilegia oxysepala HOM05D004263 ORTHO05D004931 0.0e+00 1147.1 762 77.2
Oeu001693.1 Olea europaea HOM05D004263 ORTHO05D004931 0.0e+00 1146.3 760 77.8
MBI02_g13236_MAGBIO Magnolia biondii HOM05D004263 ORTHO05D004931 0.0e+00 1145.2 769 76.9
FAN09G1275 Fragaria x ananassa HOM05D004263 ORTHO05D004931 0.0e+00 1144.8 762 77.0
Sed0028127 Sechium edule HOM05D004263 ORTHO05D004931 0.0e+00 1143.6 760 76.2
HanXRQChr07g0200651 Helianthus annuus HOM05D004263 ORTHO05D004931 0.0e+00 1143.3 758 77.6
CsaV3_7G004120 Cucumis sativus L. HOM05D004263 ORTHO05D004931 0.0e+00 1142.5 764 76.2
Lj3g0003932 Lotus japonicus HOM05D004263 ORTHO05D004931 0.0e+00 1139.4 764 76.3
SalBow7G3995 Salvia bowleyana HOM05D004263 ORTHO05D004931 0.0e+00 1138.3 764 75.9
Lsat_1_v5_gn_3_39980 Lactuca sativa HOM05D004263 ORTHO05D004931 0.0e+00 1132.9 760 76.2
AUR62034472 Chenopodium quinoa HOM05D004263 ORTHO05D004931 0.0e+00 1131.7 744 76.9
Phvul.005G107700 Phaseolus vulgaris HOM05D004263 ORTHO05D004931 0.0e+00 1128.6 762 75.9
Psat2g144400 Pisum sativum HOM05D004263 ORTHO05D004931 0.0e+00 1127.9 761 75.4
Glyma.13G301100 Glycine max HOM05D004263 ORTHO05D004931 0.0e+00 1127.5 761 75.8
PSO801G0468 Papaver somniferum HOM05D004263 ORTHO05D004931 0.0e+00 1126.7 762 76.5
THA.LOC104809434 Tarenaya hassleriana HOM05D004263 ORTHO05D004931 0.0e+00 1126.7 762 75.2
Ca_01536_v3 Cicer arietinum L. HOM05D004263 ORTHO05D004931 0.0e+00 1126.3 759 75.2
Sp1g11070 Schrenkiella parvula HOM05D004263 ORTHO05D004931 0.0e+00 1126.3 762 75.3
A06p09160 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1125.2 762 75.2
BraA06t24102Z Brassica rapa HOM05D004263 ORTHO05D004931 0.0e+00 1124.0 762 75.2
arahy.Tifrunner.gnm1.ann1.RA2UAB Arachis hypogaea HOM05D004263 ORTHO05D004931 0.0e+00 1123.6 786 74.4
CARHR012770 Cardamine hirsuta HOM05D004263 ORTHO05D004931 0.0e+00 1122.1 763 74.8
Thhalv10006686m.g Eutrema salsugineum HOM05D004263 ORTHO05D004931 0.0e+00 1121.3 762 74.9
Glyma.12G201100 Glycine max HOM05D004263 ORTHO05D004931 0.0e+00 1121.3 760 74.9
AL1G23830 Arabidopsis lyrata HOM05D004263 ORTHO05D004931 0.0e+00 1120.5 763 74.6
PSO339G5244 Papaver somniferum HOM05D004263 ORTHO05D004931 0.0e+00 1118.2 762 75.9
C08p15450 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1117.4 762 74.7
Carub.0001s1218 Capsella rubella HOM05D004263 ORTHO05D004931 0.0e+00 1117.1 762 74.7
AUR62041769 Chenopodium quinoa HOM05D004263 ORTHO05D004931 0.0e+00 1117.1 742 76.7
EL10As1g23122 Beta vulgaris HOM05D004263 ORTHO05D004931 0.0e+00 1116.3 762 75.2
A08p32810 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1116.3 762 74.5
BraA08t35204Z Brassica rapa HOM05D004263 ORTHO05D004931 0.0e+00 1116.3 762 74.5
Aa31LG1G2150 Aethionema arabicum HOM05D004263 ORTHO05D004931 0.0e+00 1114.0 762 75.2
BolC5t29815H Brassica oleracea HOM05D004263 ORTHO05D004931 0.0e+00 1113.2 762 74.7
AT1G12470 Arabidopsis thaliana HOM05D004263 ORTHO05D004931 0.0e+00 1108.2 762 73.9
Medtr8g063380 Medicago truncatula HOM05D004263 ORTHO05D004931 0.0e+00 1108.2 774 73.8
ClCG02G001300 Citrullus lanatus HOM05D004263 ORTHO05D004931 0.0e+00 1106.3 763 74.4
arahy.Tifrunner.gnm1.ann1.0PC56D Arachis hypogaea HOM05D004263 ORTHO05D004931 0.0e+00 1105.5 825 70.8
BcaB03g13185 Brassica carinata HOM05D004263 ORTHO05D004931 0.0e+00 1104.7 762 74.1
Ah.11g047230 Amaranthus hybridus HOM05D004263 ORTHO05D004931 0.0e+00 1103.6 762 74.0
C05p10740 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1101.3 765 74.0
BolC8t49173H Brassica oleracea HOM05D004263 ORTHO05D004931 0.0e+00 1096.6 796 71.4
Lj8C117G6 Lonicera japonica HOM05D004263 ORTHO05D004931 0.0e+00 1083.9 759 75.4
Duzib248G0991 Durio zibethinus HOM05D004263 ORTHO05D004931 0.0e+00 1077.4 758 74.0
Atru.chr6.3077 Acer truncatum HOM05D004263 ORTHO05D004931 1.0e-311 1073.2 701 78.3
Medtr5g026090 Medicago truncatula HOM05D004263 ORTHO05D004931 1.0e-310 1069.7 764 72.6
HPP92_004167 Vanilla planifolia HOM05D004263 ORTHO05D004931 1.8e-304 1048.9 762 70.9
Haze_03591 Corylus avellana HOM05D004263 ORTHO05D004931 3.5e-303 1044.6 789 70.0
CSS0039065 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 2.9e-289 998.4 712 74.9
Os08g0178100 Oryza sativa ssp. japonica HOM05D004263 ORTHO05D004931 3.9e-286 988.0 758 68.2
Sc08g0004410 Simmondsia chinensis HOM05D004263 ORTHO05D004931 5.0e-286 987.6 671 75.0
CDE05G0585 Ceratophyllum demersum HOM05D004263 ORTHO05D004931 4.3e-285 984.6 761 67.8
Dinv23716 Davidia involucrata HOM05D004263 ORTHO05D004931 8.4e-273 943.7 568 84.2
ATR0737G173 Amborella trichopoda HOM05D004263 ORTHO05D004931 3.2e-272 941.8 761 65.3
BcaC05g25186 Brassica carinata HOM05D004263 ORTHO05D004931 8.7e-270 933.7 623 77.0
Zm00001eb412950 Zea mays HOM05D004263 ORTHO05D004931 6.9e-267 924.1 693 69.1
unitig_0.g1433 Utricularia gibba HOM05D004263 ORTHO05D004931 3.8e-265 918.3 619 76.6
Oeu001695.1 Olea europaea HOM05D004263 ORTHO05D004931 2.5e-245 852.4 521 82.3
Pp3c14_1240 Physcomitrium patens HOM05D004263 ORTHO05D004931 4.5e-242 841.6 764 57.5
Mapoly0011s0120 Marchantia polymorpha HOM05D004263 ORTHO05D004931 4.2e-240 835.1 765 57.8
MELO3C018764.2 Cucumis melo HOM05D004263 ORTHO05D004931 9.3e-240 833.9 559 76.7
Cfa014543 Carpinus fangiana HOM05D004263 ORTHO05D004931 1.3e-238 830.1 560 76.2
SMO239G0082 Selaginella moellendorffii HOM05D004263 ORTHO05D004931 3.4e-197 692.6 755 48.5
AagrBONN_evm.TU.Sc2ySwM_228.3812 Anthoceros agrestis HOM05D004263 ORTHO05D004931 1.1e-176 624.4 557 58.2
Nitab4.5_0001514g0020 Nicotiana tabacum HOM05D004263 ORTHO05D004931 8.6e-161 571.6 335 84.2
Nitab4.5_0000025g0510 Nicotiana tabacum HOM05D004263 ORTHO05D004931 2.9e-148 530.0 281 91.5
Nitab4.5_0001514g0010 Nicotiana tabacum HOM05D004263 ORTHO05D004931 2.1e-146 523.9 373 73.5
QL08p037237 Quercus lobata HOM05D004263 ORTHO05D004931 6.6e-145 518.8 408 67.6
SHI10474 Sapria himalayana HOM05D004263 ORTHO05D004931 7.1e-123 445.7 373 62.7
CAN.G224.16 Capsicum annuum HOM05D004263 ORTHO05D004931 7.4e-120 435.6 262 83.2
Nitab4.5_0000025g0490 Nicotiana tabacum HOM05D004263 ORTHO05D004931 3.1e-110 403.7 336 65.5
PRCOL_00001544 Prasinoderma coloniale HOM05D004263 ORTHO05D004931 1.4e-94 351.7 786 32.3
TPR.G26159 Trifolium pratense HOM05D004263 ORTHO05D004931 6.8e-89 332.8 279 64.2
CAN.G2148.2 Capsicum annuum HOM05D004263 ORTHO05D004931 7.5e-88 329.3 268 66.4
TPR.G28496 Trifolium pratense HOM05D004086 ORTHO05D004641 1.8e-81 308.1 198 76.8
CBR_g50947 Chara braunii HOM05D004263 ORTHO05D004931 1.7e-79 301.6 303 52.5
Cfa022578 Carpinus fangiana HOM05D004263 ORTHO05D004931 1.1e-78 298.9 747 27.6
Cre07.g328550 Chlamydomonas reinhardtii HOM05D004263 ORTHO05D004931 1.4e-78 298.5 878 28.4
CSS0037177 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 6.6e-76 289.7 212 69.8
VMungo1080G0385 Vigna mungo HOM05D004263 ORTHO05D004931 8.0e-66 256.1 156 78.8
Atru.chr5.268 Acer truncatum HOM05D004263 ORTHO05D004931 1.1e-51 209.1 135 71.9
Atru.chr3.3152 Acer truncatum HOM05D004263 ORTHO05D004931 2.3e-44 184.9 118 73.7
Dinv23715 Davidia involucrata HOM05D004263 ORTHO05D004931 1.6e-42 178.7 103 86.4
SEGI_30776 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 4.2e-38 164.1 113 72.6
SEGI_15765 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 5.4e-38 163.7 106 77.4
CBR_g40701 Chara braunii HOM05D004263 ORTHO05D004931 6.6e-36 156.8 171 52.6
SEGI_40242 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 8.7e-36 156.4 94 78.7
CAN.G224.15 Capsicum annuum HOM05D004263 ORTHO05D004931 2.1e-34 151.8 88 83.0
CAN.G666.1 Capsicum annuum HOM05D004263 ORTHO05D004931 7.6e-32 143.3 98 71.4
CSS0002414 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 6.4e-31 140.2 139 59.0
SEGI_16142 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 1.4e-30 139.0 73 94.5
C09p48310 Brassica napus HOM05D005294 ORTHO05D006720 8.7e-28 129.8 131 59.5
BolC9t57681H Brassica oleracea HOM05D005294 ORTHO05D006720 2.5e-27 128.3 119 62.2
CAN.G2148.3 Capsicum annuum HOM05D004263 ORTHO05D004931 1.1e-25 122.9 75 78.7
CSS0009942 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 1.4e-22 112.5 80 80.0
CAN.G224.17 Capsicum annuum HOM05D004263 ORTHO05D004931 1.6e-21 109.0 69 73.9
unitig_0.g1434 Utricularia gibba HOM05D004263 ORTHO05D004931 3.9e-20 104.4 84 59.5
CBR_g40703 Chara braunii HOM05D004263 ORTHO05D004931 3.3e-19 101.3 191 37.7
SEGI_22414 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 2.1e-18 98.6 127 45.7
SEGI_06467 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 2.8e-18 98.2 126 46.0
Nitab4.5_0000025g0500 Nicotiana tabacum HOM05D004263 ORTHO05D004931 3.4e-16 91.3 45 93.3
SEGI_10945 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 1.0e-15 89.7 60 68.3
MCO10G067 Micromonas commoda HOM05D004263 ORTHO05D004931 1.3e-15 89.4 231 26.4
MD02G1222100 Malus domestica HOM05D004263 ORTHO05D004931 2.9e-15 88.2 50 80.0
SEGI_34242 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 4.9e-15 87.4 117 40.2
Manes.13G151750 Manihot esculenta HOM05D004263 ORTHO05D004931 8.4e-15 86.7 142 39.4


User provided reference genes

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