Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1C726T2 Lonicera japonica HOM05D001115 ORTHO05D001023 2.9e-23 110.9 52 100.0
Peaxi162Scf00132g00422 Petunia axillaris HOM05D001115 ORTHO05D001023 2.5e-14 81.3 57 68.4
Solyc07g054160.3 Solanum lycopersicum HOM05D001115 ORTHO05D001023 4.2e-14 80.5 58 69.0
HanXRQChr17g0553551 Helianthus annuus HOM05D001115 ORTHO05D001023 5.5e-14 80.1 51 68.6
Sopen07g028090 Solanum pennellii HOM05D001115 ORTHO05D001023 5.5e-14 80.1 58 69.0
PGSC0003DMG400018311 Solanum tuberosum HOM05D001115 ORTHO05D001023 1.6e-13 78.6 58 67.2
Nitab4.5_0000512g0160 Nicotiana tabacum HOM05D001115 ORTHO05D001023 2.7e-13 77.8 58 65.5
Nitab4.5_0002526g0050 Nicotiana tabacum HOM05D001115 ORTHO05D001023 2.7e-13 77.8 58 65.5
Thecc.02G177800 Theobroma cacao HOM05D001115 ORTHO05D001023 2.7e-13 77.8 57 63.2
TPR.G21758 Trifolium pratense HOM05D001115 ORTHO05D001023 2.7e-13 77.8 57 63.2
Thhalv10002095m.g Eutrema salsugineum HOM05D001115 ORTHO05D001023 3.6e-13 77.4 56 62.5
CANSAT78G1646 Cannabis sativa HOM05D001115 ORTHO05D001023 4.7e-13 77.0 56 62.5
Cpa.g.sc34.143 Carica papaya HOM05D001115 ORTHO05D001023 4.7e-13 77.0 56 58.9
MBI17_g43193_MAGBIO Magnolia biondii HOM05D001115 ORTHO05D001023 4.7e-13 77.0 51 62.7
Rhsim04G0067900 Rhododendron simsii HOM05D001115 ORTHO05D001023 4.7e-13 77.0 58 63.8
RhsimUnG0037000 Rhododendron simsii HOM05D001115 ORTHO05D001023 4.7e-13 77.0 58 63.8
SalBow1G1588 Salvia bowleyana HOM05D001115 ORTHO05D001023 6.1e-13 76.6 51 66.7
Dinv02169 Davidia involucrata HOM05D001115 ORTHO05D001023 8.0e-13 76.3 58 65.5
Lalb_Chr19g0135301 Lupinus albus HOM05D001115 ORTHO05D001023 8.0e-13 76.3 57 57.9
CAN.G248.20 Capsicum annuum HOM05D001115 ORTHO05D001023 1.0e-12 75.9 58 65.5
Duzib052G0128 Durio zibethinus HOM05D001115 ORTHO05D001023 1.4e-12 75.5 56 58.9
GSVIVG01030374001 Vitis vinifera HOM05D001115 ORTHO05D001023 1.4e-12 75.5 51 62.7
Lsat_1_v5_gn_8_132900 Lactuca sativa HOM05D001115 ORTHO05D001023 1.8e-12 75.1 48 64.6
COL.COLO4_07553 Corchorus olitorius HOM05D001115 ORTHO05D001023 2.3e-12 74.7 56 58.9
Lj3g0023189 Lotus japonicus HOM05D001115 ORTHO05D001023 2.3e-12 74.7 57 59.6
QL08p038410 Quercus lobata HOM05D001115 ORTHO05D001023 2.3e-12 74.7 57 59.6
Ca_25914_v3 Cicer arietinum L. HOM05D001115 ORTHO05D001023 3.0e-12 74.3 57 59.6
Eucgr.A01807 Eucalyptus grandis HOM05D001115 ORTHO05D001023 3.0e-12 74.3 54 63.0
Glyma.06G293700 Glycine max HOM05D001115 ORTHO05D001023 3.0e-12 74.3 57 59.6
Phvul.011G117300 Phaseolus vulgaris HOM05D001115 ORTHO05D001023 3.0e-12 74.3 57 59.6
CiPaw.04G125100 Carya illinoinensis HOM05D001115 ORTHO05D001023 4.0e-12 73.9 56 58.9
VMungo1127G0219 Vigna mungo HOM05D001115 ORTHO05D001023 4.0e-12 73.9 58 58.6
Carub.0003s3526 Capsella rubella HOM05D001115 ORTHO05D001023 5.2e-12 73.6 56 58.9
Sp3g33990 Schrenkiella parvula HOM05D001115 ORTHO05D001023 5.2e-12 73.6 56 58.9
AL3G53850 Arabidopsis lyrata HOM05D001115 ORTHO05D001023 6.8e-12 73.2 56 58.9
AT2G20740 Arabidopsis thaliana HOM05D001115 ORTHO05D001023 6.8e-12 73.2 56 58.9
Glyma.12G111700 Glycine max HOM05D001115 ORTHO05D001023 6.8e-12 73.2 57 59.6
Aa31LG8G17760 Aethionema arabicum HOM05D001115 ORTHO05D001023 8.8e-12 72.8 56 57.1
Manes.13G147500 Manihot esculenta HOM05D001115 ORTHO05D001023 8.8e-12 72.8 56 62.5
vmacro09277 Vaccinium macrocarpon HOM05D001115 ORTHO05D001023 1.2e-11 72.4 58 60.3
Dinv12923 Davidia involucrata HOM05D001115 ORTHO05D001023 1.5e-11 72.0 58 63.8
PSO675G8670 Papaver somniferum HOM05D001115 ORTHO05D001023 1.5e-11 72.0 53 58.5
Migut.H01075 Erythranthe guttata HOM05D001115 ORTHO05D001023 2.0e-11 71.6 51 62.7
TWI36G0781 Tripterygium wilfordii HOM05D001115 ORTHO05D001023 2.0e-11 71.6 56 58.9
CARHR111410 Cardamine hirsuta HOM05D001115 ORTHO05D001023 2.6e-11 71.2 56 55.4
Duzib248G1488 Durio zibethinus HOM05D001115 ORTHO05D001023 2.6e-11 71.2 56 57.1
THA.LOC104814499 Tarenaya hassleriana HOM05D001115 ORTHO05D001023 2.6e-11 71.2 56 53.6
arahy.Tifrunner.gnm1.ann1.E3DXNV Arachis hypogaea HOM05D001115 ORTHO05D001023 3.4e-11 70.9 57 56.1
arahy.Tifrunner.gnm1.ann1.Q3I7K5 Arachis hypogaea HOM05D001115 ORTHO05D001023 3.4e-11 70.9 57 56.1
RcHm_v2.0_Chr2g0126211 Rosa chinensis HOM05D001115 ORTHO05D001023 3.4e-11 70.9 57 59.6
TAR624G0150 Trochodendron aralioides HOM05D001115 ORTHO05D001023 4.4e-11 70.5 56 57.1
AUR62037360 Chenopodium quinoa HOM05D001115 ORTHO05D001023 5.7e-11 70.1 56 53.6
BcaC06g36765 Brassica carinata HOM05D001115 ORTHO05D001023 7.5e-11 69.7 53 56.6
C07p00170 Brassica napus HOM05D001115 ORTHO05D001023 7.5e-11 69.7 53 56.6
BolC7t40468H Brassica oleracea HOM05D001115 ORTHO05D001023 7.5e-11 69.7 53 56.6
FvH4_6g26130 Fragaria vesca HOM05D001115 ORTHO05D001023 7.5e-11 69.7 57 63.2
CiPaw.03G175400 Carya illinoinensis HOM05D001115 ORTHO05D001023 1.3e-10 68.9 53 56.6
Atru.chr6.3006 Acer truncatum HOM05D001115 ORTHO05D001023 1.7e-10 68.6 55 58.2
EL10Ac9g20707 Beta vulgaris HOM05D001115 ORTHO05D001023 1.7e-10 68.6 56 51.8
CSS0040668 Camellia sinensis var. sinensis HOM05D001115 ORTHO05D001023 2.2e-10 68.2 57 59.6
HPP92_021013 Vanilla planifolia HOM05D001115 ORTHO05D001023 2.2e-10 68.2 56 58.9
Haze_13146 Corylus avellana HOM05D001115 ORTHO05D001023 2.8e-10 67.8 55 58.2
PGR042G0194 Punica granatum HOM05D001115 ORTHO05D001023 2.8e-10 67.8 56 55.4
TAR626G1725 Trochodendron aralioides HOM05D001115 ORTHO05D001023 2.8e-10 67.8 56 51.8
Atru.chr10.1912 Acer truncatum HOM05D001115 ORTHO05D001023 3.7e-10 67.4 59 54.2
Oeu058381.1 Olea europaea HOM05D001115 ORTHO05D001023 3.7e-10 67.4 51 60.8
QL05p039812 Quercus lobata HOM05D001115 ORTHO05D001023 3.7e-10 67.4 56 57.1
CiPaw.09G058100 Carya illinoinensis HOM05D001115 ORTHO05D001023 4.8e-10 67.0 47 61.7
Hma1.2p1_1201F.1_g266710 Hydrangea macrophylla HOM05D001115 ORTHO05D001023 6.3e-10 66.6 57 54.4
Potri.004G041500 Populus trichocarpa HOM05D001115 ORTHO05D001023 6.3e-10 66.6 56 55.4
BcaB03g16867 Brassica carinata HOM05D001115 ORTHO05D001023 8.3e-10 66.2 50 56.0
A07p00030 Brassica napus HOM05D001115 ORTHO05D001023 8.3e-10 66.2 53 54.7
BraA07t27795Z Brassica rapa HOM05D001115 ORTHO05D001023 8.3e-10 66.2 53 54.7
Potri.019G101800 Populus trichocarpa HOM05D001115 ORTHO05D001023 1.1e-09 65.9 57 54.4
Prupe.3G155500 Prunus persica HOM05D001115 ORTHO05D001023 1.1e-09 65.9 57 50.9
MSTRG.12313 Avicennia marina HOM05D001115 ORTHO05D001023 1.4e-09 65.5 51 54.9
Duzib160G0769 Durio zibethinus HOM05D001115 ORTHO05D001023 1.4e-09 65.5 56 53.6
Sabra11G0034900 Salix brachista HOM05D001115 ORTHO05D001023 1.4e-09 65.5 56 53.6
SGA_v2.0_scaffold109G31116 Striga asiatica HOM05D001115 ORTHO05D001023 1.4e-09 65.5 51 58.8
Oeu017970.1 Olea europaea HOM05D001115 ORTHO05D001023 1.8e-09 65.1 54 55.6
CSS0001393 Camellia sinensis var. sinensis HOM05D001115 ORTHO05D001023 2.4e-09 64.7 45 62.2
Ciclev10018057m.g Citrus clementina HOM05D001115 ORTHO05D001023 2.4e-09 64.7 42 66.7
Sabra19G0112900 Salix brachista HOM05D001115 ORTHO05D001023 2.4e-09 64.7 44 63.6
Actinidia09860 Actinidia chinensis HOM05D001115 ORTHO05D001023 4.1e-09 63.9 54 59.3
ClCG02G017570 Citrullus lanatus HOM05D001115 ORTHO05D001023 4.1e-09 63.9 56 55.4
Os04g0679900 Oryza sativa ssp. japonica HOM05D001115 ORTHO05D001023 4.1e-09 63.9 52 51.9
TWI18G0226 Tripterygium wilfordii HOM05D001115 ORTHO05D001023 4.1e-09 63.9 56 51.8
ATR0680G167 Amborella trichopoda HOM05D001115 ORTHO05D001023 5.4e-09 63.5 54 55.6
Manes.16G026100 Manihot esculenta HOM05D001115 ORTHO05D001023 5.4e-09 63.5 58 50.0
Prupe.4G044700 Prunus persica HOM05D001115 ORTHO05D001023 5.4e-09 63.5 59 54.2
Actinidia11044 Actinidia chinensis HOM05D001115 ORTHO05D001023 7.0e-09 63.2 54 59.3
MELO3C013608.2 Cucumis melo HOM05D001115 ORTHO05D001023 7.0e-09 63.2 56 53.6
CsaV3_6G013010 Cucumis sativus L. HOM05D007014 ORTHO05D008894 7.0e-09 63.2 56 53.6
Sabra13G0114000 Salix brachista HOM05D000383 ORTHO05D000730 7.0e-09 63.2 44 59.1
CANSAT35G1125 Cannabis sativa HOM05D001115 ORTHO05D001023 1.2e-08 62.4 56 51.8
Gohir.A10G024600 Gossypium hirsutum HOM05D001115 ORTHO05D001023 1.2e-08 62.4 56 50.0
Gohir.D10G025300 Gossypium hirsutum HOM05D001115 ORTHO05D001023 1.2e-08 62.4 56 50.0
Gorai.011G026600 Gossypium raimondii HOM05D001115 ORTHO05D001023 1.2e-08 62.4 56 50.0
MD17G1242500 Malus domestica HOM05D001115 ORTHO05D001023 1.2e-08 62.4 59 47.5
Cpa.g.sc27.59 Carica papaya HOM05D001115 ORTHO05D001023 1.6e-08 62.0 56 50.0
CiPaw.10G047300 Carya illinoinensis HOM05D001115 ORTHO05D001023 1.6e-08 62.0 53 52.8
Potri.013G134200 Populus trichocarpa HOM05D001115 ORTHO05D001023 1.6e-08 62.0 57 49.1
Zm00001eb065970 Zea mays HOM05D001115 ORTHO05D001023 1.6e-08 62.0 52 53.8
Duzib235G0287 Durio zibethinus HOM05D001115 ORTHO05D001023 2.0e-08 61.6 56 50.0
Nn1g06594 Nelumbo nucifera HOM05D001115 ORTHO05D001023 2.7e-08 61.2 41 63.4
Sed0008977 Sechium edule HOM05D001115 ORTHO05D001023 3.5e-08 60.8 53 54.7
Dinv07543 Davidia involucrata HOM05D001115 ORTHO05D001023 4.5e-08 60.5 56 55.4
Eucgr.D00635 Eucalyptus grandis HOM05D001115 ORTHO05D001023 4.5e-08 60.5 54 55.6
Rhsim02G0127800 Rhododendron simsii HOM05D001115 ORTHO05D001023 4.5e-08 60.5 49 57.1
TWI38G2403 Tripterygium wilfordii HOM05D001115 ORTHO05D001023 5.9e-08 60.1 51 51.0
PGR004G1130 Punica granatum HOM05D001115 ORTHO05D001023 1.3e-07 58.9 52 55.8
GSVIVG01002019001 Vitis vinifera HOM05D001115 ORTHO05D001023 1.3e-07 58.9 57 52.6
Actinidia07579 Actinidia chinensis HOM05D001115 ORTHO05D001023 2.2e-07 58.2 47 57.4
Aqoxy1G02522 Aquilegia oxysepala HOM05D001115 ORTHO05D001023 2.2e-07 58.2 53 47.2
vmacro15899 Vaccinium macrocarpon HOM05D001115 ORTHO05D001023 2.9e-07 57.8 49 55.1
Potri.011G050900 Populus trichocarpa HOM05D001115 ORTHO05D001023 3.8e-07 57.4 56 50.0
RcHm_v2.0_Chr5g0008101 Rosa chinensis HOM05D001115 ORTHO05D001023 5.0e-07 57.0 56 46.4
Ciclev10016622m.g Citrus clementina HOM05D001115 ORTHO05D001023 6.5e-07 56.6 42 59.5
MD10G1295800 Malus domestica HOM05D001115 ORTHO05D001023 8.5e-07 56.2 44 56.8
MD05G1314500 Malus domestica HOM05D001115 ORTHO05D001023 1.1e-06 55.8 38 63.2
Cc02_g13180 Coffea canephora HOM05D001115 ORTHO05D001023 3.2e-06 54.3 60 40.0
Actinidia39455 Actinidia chinensis HOM05D001115 ORTHO05D001023 4.2e-06 53.9 47 55.3
FvH4_3g04940 Fragaria vesca HOM05D001115 ORTHO05D001023 4.2e-06 53.9 56 41.1
FAN11G0571 Fragaria x ananassa HOM05D001115 ORTHO05D001023 4.2e-06 53.9 56 41.1
FAN16G2292 Fragaria x ananassa HOM05D001115 ORTHO05D001023 5.5e-06 53.5 56 41.1
FAN21G2614 Fragaria x ananassa HOM05D001115 ORTHO05D001023 5.5e-06 53.5 56 41.1
FAN25G2831 Fragaria x ananassa HOM05D001115 ORTHO05D001023 5.5e-06 53.5 56 41.1
Lj2A287T55 Lonicera japonica HOM05D001115 ORTHO05D001023 5.5e-06 53.5 47 51.1
CSS0027947 Camellia sinensis var. sinensis HOM05D001115 ORTHO05D001023 9.5e-06 52.8 56 44.6


User provided reference genes

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