Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1C71G15 Lonicera japonica HOM05D004940 ORTHO05D007805 0.0e+00 1249.6 594 100.0
Actinidia37536 Actinidia chinensis HOM05D004940 ORTHO05D007805 2.5e-283 978.4 553 82.5
Cc01_g18010 Coffea canephora HOM05D004940 ORTHO05D007805 2.1e-282 975.3 526 84.2
vmacro02697 Vaccinium macrocarpon HOM05D004940 ORTHO05D007805 1.1e-280 969.5 553 80.3
TAR362G0048 Trochodendron aralioides HOM05D004940 ORTHO05D007805 4.3e-280 967.6 553 81.4
TWI12G0664 Tripterygium wilfordii HOM05D004940 ORTHO05D007805 9.6e-280 966.5 547 81.0
CSS0021031 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D007805 2.1e-279 965.3 546 82.6
Migut.N02221 Erythranthe guttata HOM05D004940 ORTHO05D007805 5.3e-278 960.7 527 82.9
Thecc.01G253300 Theobroma cacao HOM05D004940 ORTHO05D007805 1.5e-277 959.1 539 81.8
Dinv16378 Davidia involucrata HOM05D004940 ORTHO05D007805 2.0e-277 958.7 553 81.7
Cpa.g.sc165.41 Carica papaya HOM05D004940 ORTHO05D007805 7.6e-277 956.8 541 81.0
Potri.014G195500 Populus trichocarpa HOM05D004940 ORTHO05D007805 2.2e-276 955.3 558 79.2
arahy.Tifrunner.gnm1.ann1.N1VHSE Arachis hypogaea HOM05D004940 ORTHO05D007805 2.5e-275 951.8 526 81.9
Ciclev10019263m.g Citrus clementina HOM05D004940 ORTHO05D007805 7.2e-275 950.3 546 79.7
Sabra14G0144700 Salix brachista HOM05D004940 ORTHO05D007805 4.6e-274 947.6 551 79.1
Lsat_1_v5_gn_8_92240 Lactuca sativa HOM05D004940 ORTHO05D007805 7.9e-274 946.8 543 80.1
COL.COLO4_36581 Corchorus olitorius HOM05D004940 ORTHO05D007805 1.3e-273 946.0 542 80.6
Aqoxy5G00176 Aquilegia oxysepala HOM05D004940 ORTHO05D007805 1.8e-273 945.7 547 79.5
Prupe.8G218700 Prunus persica HOM05D004940 ORTHO05D007805 3.0e-273 944.9 542 80.6
Glyma.19G166800 Glycine max HOM05D004940 ORTHO05D007805 3.9e-273 944.5 520 82.7
CAN.G1270.3 Capsicum annuum HOM05D004940 ORTHO05D007805 8.7e-273 943.3 546 79.3
Duzib133G0552 Durio zibethinus HOM05D004940 ORTHO05D007805 1.1e-272 943.0 550 79.1
MSTRG.18341 Avicennia marina HOM05D004940 ORTHO05D007805 2.5e-272 941.8 552 79.7
Ca_08723_v3 Cicer arietinum L. HOM05D004940 ORTHO05D007805 2.5e-272 941.8 549 79.8
GSVIVG01028386001 Vitis vinifera HOM05D004940 ORTHO05D007805 5.7e-272 940.6 553 78.7
Sc24g0003690 Simmondsia chinensis HOM05D004940 ORTHO05D007805 1.3e-271 939.5 556 77.7
Eucgr.A01366 Eucalyptus grandis HOM05D004940 ORTHO05D007805 4.8e-271 937.6 521 81.6
Sopen09g028520 Solanum pennellii HOM05D004940 ORTHO05D007805 6.3e-271 937.2 555 77.8
Glyma.03G165500 Glycine max HOM05D004940 ORTHO05D007805 1.1e-270 936.4 548 78.8
Lj1g0003710 Lotus japonicus HOM05D004940 ORTHO05D007805 1.4e-270 936.0 520 81.9
TPR.G9192 Trifolium pratense HOM05D004940 ORTHO05D007805 1.8e-270 935.6 544 79.6
ECA236G4817 Erigeron canadensis HOM05D004940 ORTHO05D007805 2.4e-270 935.3 548 77.9
arahy.Tifrunner.gnm1.ann1.YK26R7 Arachis hypogaea HOM05D004940 ORTHO05D007805 3.1e-270 934.9 526 81.0
Medtr7g098010 Medicago truncatula HOM05D004940 ORTHO05D007805 3.1e-270 934.9 520 82.1
CiPaw.03G268400 Carya illinoinensis HOM05D004940 ORTHO05D007805 5.3e-270 934.1 553 79.2
SalBow4G0784 Salvia bowleyana HOM05D004940 ORTHO05D007805 6.9e-270 933.7 527 80.6
Migut.D00459 Erythranthe guttata HOM05D004940 ORTHO05D007805 9.0e-270 933.3 527 80.6
MD10G1178900 Malus domestica HOM05D004940 ORTHO05D007805 9.0e-270 933.3 548 79.0
RcHm_v2.0_Chr6g0287291 Rosa chinensis HOM05D004940 ORTHO05D007805 1.5e-269 932.6 555 77.8
CANSAT01G2138 Cannabis sativa HOM05D004940 ORTHO05D007805 2.6e-269 931.8 568 76.9
Manes.12G035200 Manihot esculenta HOM05D004940 ORTHO05D007805 2.6e-269 931.8 553 77.6
Nn1g02898 Nelumbo nucifera HOM05D004940 ORTHO05D007805 3.4e-269 931.4 544 79.8
Psat3g055720 Pisum sativum HOM05D004940 ORTHO05D007805 3.4e-269 931.4 548 78.8
Peaxi162Scf00415g00416 Petunia axillaris HOM05D004940 ORTHO05D007805 5.9e-269 930.6 572 76.2
PGR031G0691 Punica granatum HOM05D004940 ORTHO05D007805 1.3e-268 929.5 517 81.6
Gorai.004G057300 Gossypium raimondii HOM05D004940 ORTHO05D007805 5.0e-268 927.5 556 78.1
Gohir.D08G056200 Gossypium hirsutum HOM05D004940 ORTHO05D007805 1.9e-267 925.6 556 77.9
HanXRQChr04g0111301 Helianthus annuus HOM05D004940 ORTHO05D007805 2.5e-267 925.2 552 77.5
CsaV3_3G028180 Cucumis sativus L. HOM05D004940 ORTHO05D007805 4.2e-267 924.5 530 80.6
Gohir.A08G045700 Gossypium hirsutum HOM05D004940 ORTHO05D007805 5.5e-267 924.1 546 79.1
Atru.chr5.1786 Acer truncatum HOM05D004940 ORTHO05D007805 9.4e-267 923.3 550 77.8
Lalb_Chr01g0019571 Lupinus albus HOM05D004940 ORTHO05D007805 9.4e-267 923.3 520 80.6
Haze_24676 Corylus avellana HOM05D004940 ORTHO05D007805 1.2e-266 922.9 574 75.6
MD05G1192400 Malus domestica HOM05D004940 ORTHO05D007805 1.2e-266 922.9 544 79.8
SGA_v2.0_scaffold1G00640 Striga asiatica HOM05D004940 ORTHO05D007805 1.0e-265 919.8 534 79.0
Sed0008536 Sechium edule HOM05D004940 ORTHO05D007805 2.3e-265 918.7 528 79.7
EL10Ac7g17647 Beta vulgaris HOM05D004940 ORTHO05D007805 3.0e-265 918.3 546 77.5
Phvul.001G163200 Phaseolus vulgaris HOM05D004940 ORTHO05D007805 3.0e-265 918.3 548 78.3
VMungo1383G2176 Vigna mungo HOM05D004940 ORTHO05D007805 9.7e-264 913.3 548 77.6
ClCG07G001250 Citrullus lanatus HOM05D004940 ORTHO05D007805 4.8e-263 911.0 520 80.8
QL09p040550 Quercus lobata HOM05D004940 ORTHO05D007805 1.2e-261 906.4 688 65.3
FAN27G1261 Fragaria x ananassa HOM05D004940 ORTHO05D007805 1.0e-260 903.3 524 78.2
FvH4_2g20890 Fragaria vesca HOM05D004940 ORTHO05D007805 1.2e-258 896.3 524 77.9
DCAR_000927 Daucus carota HOM05D004940 ORTHO05D007805 7.9e-258 893.6 543 77.0
THA.LOC104826048 Tarenaya hassleriana HOM05D004940 ORTHO05D007805 1.0e-257 893.3 573 71.4
C05p02330 Brassica napus HOM05D004940 ORTHO05D007805 1.5e-256 889.4 558 72.6
MBI07_g18994_MAGBIO Magnolia biondii HOM05D004940 ORTHO05D007805 2.0e-256 889.0 547 76.1
Rhsim13G0038600 Rhododendron simsii HOM05D004940 ORTHO05D007805 2.6e-256 888.6 759 59.2
CARHR003360 Cardamine hirsuta HOM05D004940 ORTHO05D007805 1.3e-255 886.3 543 75.0
Sp1g02850 Schrenkiella parvula HOM05D004940 ORTHO05D007805 2.2e-255 885.6 544 73.7
PSO764G0099 Papaver somniferum HOM05D004940 ORTHO05D007805 2.8e-255 885.2 544 75.7
BolC5t29011H Brassica oleracea HOM05D004940 ORTHO05D007805 3.7e-255 884.8 559 72.5
Thhalv10007051m.g Eutrema salsugineum HOM05D004940 ORTHO05D007805 3.7e-255 884.8 546 74.0
Aa31LG1G20810 Aethionema arabicum HOM05D004940 ORTHO05D007805 6.3e-255 884.0 548 73.4
A10p02520 Brassica napus HOM05D004940 ORTHO05D007805 8.2e-255 883.6 526 75.7
BraA10t42520Z Brassica rapa HOM05D004940 ORTHO05D007805 8.2e-255 883.6 526 75.7
BcaC07g42217 Brassica carinata HOM05D004940 ORTHO05D007805 1.4e-254 882.9 525 75.4
A09p68080 Brassica napus HOM05D004940 ORTHO05D007805 3.1e-254 881.7 554 72.2
C08p52520 Brassica napus HOM05D004940 ORTHO05D007805 3.1e-254 881.7 558 72.4
BolC8t52779H Brassica oleracea HOM05D004940 ORTHO05D007805 3.1e-254 881.7 558 72.4
BraA09t42143Z Brassica rapa HOM05D004940 ORTHO05D007805 4.1e-254 881.3 554 72.2
Carub.0001s0317 Capsella rubella HOM05D004940 ORTHO05D007805 1.2e-253 879.8 554 73.5
AT1G04010 Arabidopsis thaliana HOM05D004940 ORTHO05D007805 1.6e-253 879.4 554 73.3
FAN20G1599 Fragaria x ananassa HOM05D004940 ORTHO05D007805 2.0e-253 879.0 548 74.8
FAN15G2608 Fragaria x ananassa HOM05D004940 ORTHO05D007805 5.9e-253 877.5 554 73.8
Manes.13G037500 Manihot esculenta HOM05D004940 ORTHO05D007805 1.0e-252 876.7 527 77.0
FAN24G3024 Fragaria x ananassa HOM05D004940 ORTHO05D007805 1.5e-251 872.8 554 73.6
BcaC05g24475 Brassica carinata HOM05D004940 ORTHO05D007805 2.7e-250 868.6 554 71.5
ATR0736G200 Amborella trichopoda HOM05D004940 ORTHO05D007805 6.7e-249 864.0 549 72.1
Zm00001eb258680 Zea mays HOM05D004940 ORTHO05D007805 6.3e-247 857.4 552 72.5
TWI75G1829 Tripterygium wilfordii HOM05D004940 ORTHO05D007805 1.1e-235 820.1 472 79.7
Solyc09g072710.4 Solanum lycopersicum HOM05D004940 ORTHO05D007805 5.5e-235 817.8 555 69.9
DCAR_018506 Daucus carota HOM05D004940 ORTHO05D007805 9.4e-235 817.0 492 76.6
Hund05470 Selenicereus undatus HOM05D004940 ORTHO05D007805 1.4e-225 786.6 553 68.0
Nitab4.5_0002389g0100 Nicotiana tabacum HOM05D004940 ORTHO05D007805 3.0e-225 785.4 551 68.6
AUR62025474 Chenopodium quinoa HOM05D004940 ORTHO05D007805 1.9e-219 766.1 553 67.8
AUR62008763 Chenopodium quinoa HOM05D004940 ORTHO05D007805 2.5e-219 765.8 554 67.5
MELO3C012862.2 Cucumis melo HOM05D004940 ORTHO05D007805 1.7e-215 753.1 427 81.7
AL1G13620 Arabidopsis lyrata HOM05D004940 ORTHO05D007805 2.9e-215 752.3 462 73.8
Oeu028892.3 Olea europaea HOM05D004940 ORTHO05D007805 8.1e-210 734.2 487 70.6
Nitab4.5_0003295g0190 Nicotiana tabacum HOM05D004940 ORTHO05D007805 2.3e-209 732.6 551 64.2
AagrBONN_evm.TU.Sc2ySwM_344.1925 Anthoceros agrestis HOM05D004940 ORTHO05D007805 8.1e-202 707.6 522 62.8
Mapoly0023s0070 Marchantia polymorpha HOM05D004940 ORTHO05D007805 2.9e-199 699.1 559 58.9
HPP92_012807 Vanilla planifolia HOM05D004940 ORTHO05D007805 5.1e-196 688.3 410 77.6
CDE01G0548 Ceratophyllum demersum HOM05D004940 ORTHO05D007805 8.1e-186 654.4 462 67.3
SMO137G0189 Selaginella moellendorffii HOM05D004940 ORTHO05D007805 3.1e-185 652.5 517 58.8
SMO137G0113 Selaginella moellendorffii HOM05D004940 ORTHO05D007805 1.3e-183 647.1 515 58.8
SHI09716 Sapria himalayana HOM05D004940 ORTHO05D000023 6.7e-180 634.8 448 68.8
Atru.chr5.1796 Acer truncatum HOM05D004940 ORTHO05D007805 5.3e-177 625.2 352 82.4
Pp3c16_20320 Physcomitrium patens HOM05D004940 ORTHO05D007805 1.9e-174 616.7 471 61.1
Duzib138G0347 Durio zibethinus HOM05D004940 ORTHO05D007805 1.2e-133 481.1 296 74.7
Lj1A78G31 Lonicera japonica HOM05D004940 ORTHO05D007805 3.0e-124 449.9 435 57.2
PSO832G4005 Papaver somniferum HOM05D004940 ORTHO05D007805 7.2e-118 428.7 271 74.9
PGSC0003DMG401024284 Solanum tuberosum HOM05D004940 ORTHO05D007805 6.4e-82 309.3 173 83.2
PSO832G3423 Papaver somniferum HOM05D004940 ORTHO05D007805 6.6e-79 299.3 162 81.5
SalBow5G2300 Salvia bowleyana HOM05D004940 ORTHO05D007805 1.1e-73 282.0 205 66.8
Lj1C79T2 Lonicera japonica HOM05D004940 ORTHO05D007805 2.3e-71 274.2 131 96.9
Os02g0814100 Oryza sativa ssp. japonica HOM05D004940 ORTHO05D007805 6.9e-52 209.5 159 61.6
SEGI_20278 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 1.3e-47 195.3 158 59.5
SMO181G0022 Selaginella moellendorffii HOM05D004940 ORTHO05D037547 2.3e-47 194.5 340 36.8
Lsat_1_v5_gn_2_111960 Lactuca sativa HOM05D004940 ORTHO05D007805 9.7e-46 189.1 105 81.9
Zm00001eb037190 Zea mays HOM05D004940 ORTHO05D007805 1.4e-41 175.3 83 91.6
SHI09711 Sapria himalayana HOM05D004940 ORTHO05D018819 5.5e-41 173.3 116 69.0
Atru.chr5.1783 Acer truncatum HOM05D004940 ORTHO05D007805 1.9e-38 164.9 118 66.1
Lj1C79T15 Lonicera japonica HOM05D004940 ORTHO05D048414 1.5e-35 155.2 79 94.9
SEGI_40684 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 7.7e-35 152.9 103 73.8
SEGI_08888 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 5.0e-34 150.2 104 66.3
Lj1C79G2 Lonicera japonica HOM05D004940 ORTHO05D003385 3.0e-31 141.0 66 100.0
MCO05G688 Micromonas commoda HOM05D001762 ORTHO05D001774 1.2e-27 129.0 219 34.7
SEGI_20843 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 8.8e-23 112.8 82 68.3
CSS0008401 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 2.6e-22 111.3 58 86.2
CSS0034361 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 2.6e-22 111.3 61 82.0
CSS0049470 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 2.6e-22 111.3 58 86.2
CSS0033490 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 5.7e-22 110.2 58 86.2
VMungo0251G2796 Vigna mungo HOM05D004940 ORTHO05D007805 9.7e-22 109.4 51 92.2
Cre02.g106400 Chlamydomonas reinhardtii HOM05D001762 ORTHO05D001774 6.3e-21 106.7 233 28.3
CSS0026527 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 8.2e-21 106.3 58 82.8
Cfa024946 Carpinus fangiana HOM05D001762 ORTHO05D001774 1.6e-19 102.1 205 28.8
PRCOL_00006657 Prasinoderma coloniale HOM05D001762 ORTHO05D001774 1.7e-18 98.6 208 27.4
CSS0024627 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 2.5e-17 94.7 51 88.2
CSS0048666 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 2.5e-17 94.7 51 88.2
SMO181G0033 Selaginella moellendorffii HOM05D004940 ORTHO05D037547 9.4e-17 92.8 138 39.9
SEGI_00315 Sequoiadendron giganteum HOM05D004940 ORTHO05D048414 1.8e-15 88.6 65 63.1
Gohir.A08G245800 Gossypium hirsutum HOM05D001762 ORTHO05D001774 8.8e-15 86.3 164 32.9
Gohir.D08G266800 Gossypium hirsutum HOM05D001762 ORTHO05D001774 8.8e-15 86.3 164 32.9
Gorai.004G284600 Gossypium raimondii HOM05D001762 ORTHO05D001774 8.8e-15 86.3 164 32.9
MBI13_g29642_MAGBIO Magnolia biondii HOM05D004940 ORTHO05D001085 8.5e-10 69.7 32 84.4
HPP92_012808 Vanilla planifolia HOM05D004940 ORTHO05D007805 1.0e-07 62.8 38 68.4
Thecc.08G085800 Theobroma cacao HOM05D006117 ORTHO05D007996 2.3e-07 61.6 260 26.2
CSS0023541 Camellia sinensis var. sinensis HOM05D006117 ORTHO05D007996 3.0e-07 61.2 261 24.1
CSS0008179 Camellia sinensis var. sinensis HOM05D006117 ORTHO05D007996 4.0e-07 60.8 261 24.1


User provided reference genes

Program Settings