Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1C718T2 Lonicera japonica HOM05D005273 ORTHO05D006195 8.2e-117 423.7 210 100.0
GSVIVG01020564001 Vitis vinifera HOM05D005273 ORTHO05D006195 8.9e-95 350.5 190 88.9
TAR627G0042 Trochodendron aralioides HOM05D005273 ORTHO05D006195 1.4e-92 343.2 190 85.8
DCAR_013064 Daucus carota HOM05D005273 ORTHO05D006195 1.8e-92 342.8 190 85.8
MSTRG.21306 Avicennia marina HOM05D005273 ORTHO05D006195 3.5e-91 338.6 190 84.7
PSO782G4868 Papaver somniferum HOM05D005273 ORTHO05D006195 3.5e-91 338.6 190 85.3
Solyc02g072105.1 Solanum lycopersicum HOM05D005273 ORTHO05D006195 3.5e-91 338.6 190 85.3
CSS0011944 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 7.8e-91 337.4 190 84.7
CSS0048709 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 7.8e-91 337.4 190 84.7
Gorai.007G069300 Gossypium raimondii HOM05D005273 ORTHO05D006195 1.0e-90 337.0 190 84.7
Nn1g04120 Nelumbo nucifera HOM05D005273 ORTHO05D006195 1.3e-90 336.7 190 84.7
Sopen02g021070 Solanum pennellii HOM05D005273 ORTHO05D006195 1.3e-90 336.7 190 84.7
PGSC0003DMG400028417 Solanum tuberosum HOM05D005273 ORTHO05D006195 1.3e-90 336.7 190 84.2
Hma1.2p1_0002F.1_g002020 Hydrangea macrophylla HOM05D005273 ORTHO05D006195 1.7e-90 336.3 190 85.8
Migut.D02068 Erythranthe guttata HOM05D005273 ORTHO05D006195 2.3e-90 335.9 190 84.7
Dinv04937 Davidia involucrata HOM05D005273 ORTHO05D006195 2.9e-90 335.5 190 85.3
Gohir.D11G064100 Gossypium hirsutum HOM05D005273 ORTHO05D006195 2.9e-90 335.5 190 84.2
Atru.chr6.2972 Acer truncatum HOM05D005273 ORTHO05D006195 5.0e-90 334.7 190 84.7
Gohir.A11G060000 Gossypium hirsutum HOM05D005273 ORTHO05D006195 5.0e-90 334.7 190 84.2
Sc21g0002980 Simmondsia chinensis HOM05D005273 ORTHO05D006195 5.0e-90 334.7 190 83.2
PSO478G2492 Papaver somniferum HOM05D005273 ORTHO05D006195 1.1e-89 333.6 190 84.2
Lsat_1_v5_gn_4_66761 Lactuca sativa HOM05D005273 ORTHO05D006195 2.5e-89 332.4 190 82.1
CAN.G411.45 Capsicum annuum HOM05D005273 ORTHO05D006195 4.3e-89 331.6 190 83.2
ECA246G2010 Erigeron canadensis HOM05D005273 ORTHO05D006195 4.3e-89 331.6 191 82.7
FvH4_6g26410 Fragaria vesca HOM05D005273 ORTHO05D006195 4.3e-89 331.6 190 83.7
Nn1g06518 Nelumbo nucifera HOM05D005273 ORTHO05D006195 4.3e-89 331.6 190 84.2
Ciclev10015816m.g Citrus clementina HOM05D005273 ORTHO05D006195 5.6e-89 331.3 190 83.7
Haze_12807 Corylus avellana HOM05D005273 ORTHO05D006195 5.6e-89 331.3 190 84.2
CANSAT64G2205 Cannabis sativa HOM05D005273 ORTHO05D006195 7.3e-89 330.9 190 82.6
FAN05G3218 Fragaria x ananassa HOM05D005273 ORTHO05D006195 1.2e-88 330.1 190 83.2
Sabra07G0117800 Salix brachista HOM05D005273 ORTHO05D006195 1.2e-88 330.1 190 83.7
FAN02G4311 Fragaria x ananassa HOM05D005273 ORTHO05D006195 1.6e-88 329.7 191 82.7
RcHm_v2.0_Chr2g0127911 Rosa chinensis HOM05D005273 ORTHO05D006195 1.6e-88 329.7 190 83.2
COL.COLO4_33584 Corchorus olitorius HOM05D005273 ORTHO05D006195 3.6e-88 328.6 190 81.6
MD09G1233100 Malus domestica HOM05D005273 ORTHO05D006195 6.1e-88 327.8 190 82.6
QL08p039365 Quercus lobata HOM05D005273 ORTHO05D006195 6.1e-88 327.8 190 82.1
SalBow1G1167 Salvia bowleyana HOM05D005273 ORTHO05D006195 6.1e-88 327.8 189 84.7
Sabra07G0113000 Salix brachista HOM05D005273 ORTHO05D006195 1.0e-87 327.0 190 83.2
Manes.02G045100 Manihot esculenta HOM05D005273 ORTHO05D006195 1.4e-87 326.6 190 81.1
Ah.11g045620 Amaranthus hybridus HOM05D005273 ORTHO05D006195 1.8e-87 326.2 190 81.1
Duzib264G0403 Durio zibethinus HOM05D005273 ORTHO05D006195 1.8e-87 326.2 190 83.2
arahy.Tifrunner.gnm1.ann1.891C6J Arachis hypogaea HOM05D005273 ORTHO05D006195 3.1e-87 325.5 193 79.8
Potri.007G139700 Populus trichocarpa HOM05D005273 ORTHO05D006195 3.1e-87 325.5 190 82.1
A03p53890 Brassica napus HOM05D005273 ORTHO05D006195 4.0e-87 325.1 193 79.8
BraA03t14458Z Brassica rapa HOM05D005273 ORTHO05D006195 4.0e-87 325.1 193 79.8
CiPaw.04G127500 Carya illinoinensis HOM05D005273 ORTHO05D006195 4.0e-87 325.1 190 81.6
HanXRQChr15g0466031 Helianthus annuus HOM05D005273 ORTHO05D006195 5.2e-87 324.7 190 80.5
CARHR229970 Cardamine hirsuta HOM05D005273 ORTHO05D006195 6.8e-87 324.3 193 79.8
Aa31LG2G13370 Aethionema arabicum HOM05D005273 ORTHO05D006195 8.9e-87 323.9 193 80.3
arahy.Tifrunner.gnm1.ann1.EEV1KR Arachis hypogaea HOM05D005273 ORTHO05D006195 8.9e-87 323.9 193 79.3
arahy.Tifrunner.gnm1.ann1.RDE8QD Arachis hypogaea HOM05D005273 ORTHO05D006195 8.9e-87 323.9 193 78.8
SalBow1G7481 Salvia bowleyana HOM05D005273 ORTHO05D006195 8.9e-87 323.9 189 84.1
BolC7t45723H Brassica oleracea HOM05D005273 ORTHO05D006195 1.2e-86 323.6 193 79.3
Carub.0007s1834 Capsella rubella HOM05D005273 ORTHO05D006195 1.2e-86 323.6 193 79.8
Thhalv10025474m.g Eutrema salsugineum HOM05D005273 ORTHO05D006195 1.2e-86 323.6 193 79.8
Prupe.3G131200 Prunus persica HOM05D005273 ORTHO05D006195 1.2e-86 323.6 190 81.6
QL08p039454 Quercus lobata HOM05D005273 ORTHO05D006195 1.2e-86 323.6 190 80.5
Cpa.g.sc83.46 Carica papaya HOM05D005273 ORTHO05D006195 1.5e-86 323.2 190 81.1
Cc06_g20460 Coffea canephora HOM05D005273 ORTHO05D006195 1.5e-86 323.2 186 82.3
BcaNung01659 Brassica carinata HOM05D005273 ORTHO05D006195 3.4e-86 322.0 192 78.6
SGA_v2.0_scaffold25G10971 Striga asiatica HOM05D005273 ORTHO05D006195 4.4e-86 321.6 199 80.4
CANSAT64G2383 Cannabis sativa HOM05D005273 ORTHO05D006195 5.8e-86 321.2 190 80.5
A01p14180 Brassica napus HOM05D005273 ORTHO05D006195 7.5e-86 320.9 193 78.8
BraA01t01367Z Brassica rapa HOM05D005273 ORTHO05D006195 7.5e-86 320.9 193 78.8
Sp7g21020 Schrenkiella parvula HOM05D005273 ORTHO05D006195 7.5e-86 320.9 193 78.8
AL7G30590 Arabidopsis lyrata HOM05D005273 ORTHO05D006195 1.3e-85 320.1 193 80.3
C07p52300 Brassica napus HOM05D005273 ORTHO05D006195 2.2e-85 319.3 193 78.2
THA.LOC104823543 Tarenaya hassleriana HOM05D005273 ORTHO05D006195 2.2e-85 319.3 190 80.5
AT4G22930 Arabidopsis thaliana HOM05D005273 ORTHO05D006195 2.9e-85 318.9 193 78.2
Carub.0001s3611 Capsella rubella HOM05D005273 ORTHO05D006195 3.7e-85 318.5 193 78.2
ClCG10G015250 Citrullus lanatus HOM05D005273 ORTHO05D006195 3.7e-85 318.5 191 79.6
Duzib147G0196 Durio zibethinus HOM05D005273 ORTHO05D006195 3.7e-85 318.5 190 80.5
Thecc.K0007100 Theobroma cacao HOM05D005273 ORTHO05D006195 3.7e-85 318.5 190 80.0
AUR62012902 Chenopodium quinoa HOM05D005273 ORTHO05D006195 4.9e-85 318.2 190 80.0
arahy.Tifrunner.gnm1.ann1.YR7R6W Arachis hypogaea HOM05D005273 ORTHO05D006195 8.3e-85 317.4 189 79.4
CDE08G0645 Ceratophyllum demersum HOM05D005273 ORTHO05D006195 8.3e-85 317.4 190 78.4
PGR142G4354 Punica granatum HOM05D005273 ORTHO05D006195 8.3e-85 317.4 190 80.0
TWI59G0041 Tripterygium wilfordii HOM05D005273 ORTHO05D006195 8.3e-85 317.4 190 80.5
THA.LOC104814179 Tarenaya hassleriana HOM05D005273 ORTHO05D006195 1.1e-84 317.0 190 80.5
VMungo1127G0137 Vigna mungo HOM05D005273 ORTHO05D006195 1.4e-84 316.6 190 78.4
Aqoxy6G00048 Aquilegia oxysepala HOM05D005273 ORTHO05D006195 1.9e-84 316.2 190 79.5
Lj3g0011026 Lotus japonicus HOM05D005273 ORTHO05D006195 1.9e-84 316.2 190 77.9
Lalb_Chr03g0027211 Lupinus albus HOM05D005273 ORTHO05D006195 4.1e-84 315.1 190 77.9
ATR0737G119 Amborella trichopoda HOM05D005273 ORTHO05D006195 5.4e-84 314.7 191 78.0
MBI07_g30188_MAGBIO Magnolia biondii HOM05D005273 ORTHO05D006195 7.0e-84 314.3 190 78.4
Ca_18943_v3 Cicer arietinum L. HOM05D005273 ORTHO05D006195 9.2e-84 313.9 190 77.4
Sed0018091 Sechium edule HOM05D005273 ORTHO05D006195 9.2e-84 313.9 190 78.9
Glyma.12G114500 Glycine max HOM05D005273 ORTHO05D006195 1.6e-83 313.2 190 78.4
Phvul.010G107600 Phaseolus vulgaris HOM05D005273 ORTHO05D006195 1.6e-83 313.2 190 77.4
Phvul.011G119600 Phaseolus vulgaris HOM05D005273 ORTHO05D006195 1.6e-83 313.2 190 77.4
unitig_899.g15313 Utricularia gibba HOM05D005273 ORTHO05D006195 1.6e-83 313.2 187 80.2
Psat7g169200 Pisum sativum HOM05D005273 ORTHO05D006195 4.6e-83 311.6 190 76.3
EL10Ac3g07435 Beta vulgaris HOM05D005273 ORTHO05D006195 6.0e-83 311.2 204 75.5
Hund09652 Selenicereus undatus HOM05D005273 ORTHO05D006195 6.0e-83 311.2 190 77.9
MELO3C009854.2 Cucumis melo HOM05D005273 ORTHO05D006195 7.8e-83 310.8 191 78.0
CsaV3_3G041260 Cucumis sativus L. HOM05D005273 ORTHO05D006195 1.7e-82 309.7 191 77.5
Zm00001eb153030 Zea mays HOM05D005273 ORTHO05D006195 3.0e-82 308.9 189 76.2
Glyma.06G291600 Glycine max HOM05D005273 ORTHO05D006195 5.0e-82 308.1 190 75.8
Medtr4g078370 Medicago truncatula HOM05D005273 ORTHO05D006195 5.0e-82 308.1 190 75.8
AUR62011776 Chenopodium quinoa HOM05D005273 ORTHO05D006195 6.6e-82 307.8 237 67.1
TWI18G0085 Tripterygium wilfordii HOM05D005273 ORTHO05D006195 6.6e-82 307.8 190 77.9
Eucgr.K01040 Eucalyptus grandis HOM05D005273 ORTHO05D006195 1.9e-81 306.2 190 76.3
HPP92_004898 Vanilla planifolia HOM05D005273 ORTHO05D006195 9.5e-81 303.9 190 75.8
Os01g0747500 Oryza sativa ssp. japonica HOM05D005273 ORTHO05D006195 1.8e-79 299.7 189 74.1
vmacro12316 Vaccinium macrocarpon HOM05D005273 ORTHO05D006195 4.1e-76 288.5 279 55.9
SHI10390 Sapria himalayana HOM05D005273 ORTHO05D006195 6.0e-75 284.6 190 71.1
Rhsim06G0140600 Rhododendron simsii HOM05D005273 ORTHO05D006195 7.3e-73 277.7 293 52.6
SMO347G0496 Selaginella moellendorffii HOM05D005273 ORTHO05D006195 3.6e-72 275.4 190 71.6
C01p17440 Brassica napus HOM05D000022 ORTHO05D006195 4.0e-71 271.9 206 67.5
Mapoly0001s0029 Marchantia polymorpha HOM05D005273 ORTHO05D006195 5.8e-70 268.1 188 68.1
Pp3c13_8930 Physcomitrium patens HOM05D005273 ORTHO05D006195 2.1e-67 259.6 188 68.1
Cfa014627 Carpinus fangiana HOM05D005273 ORTHO05D006195 3.0e-66 255.8 189 70.4
BcaC09g51057 Brassica carinata HOM05D000022 ORTHO05D006195 6.6e-66 254.6 204 62.3
Nitab4.5_0000437g0040 Nicotiana tabacum HOM05D005273 ORTHO05D006195 1.1e-65 253.8 158 79.1
Lj5g0005541 Lotus japonicus HOM05D005273 ORTHO05D006195 1.9e-65 253.1 153 77.8
CSS0013056 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 3.3e-65 252.3 158 77.2
Nitab4.5_0006070g0020 Nicotiana tabacum HOM05D005273 ORTHO05D006195 9.6e-65 250.8 158 78.5
CBR_g21229 Chara braunii HOM05D005273 ORTHO05D006195 4.0e-63 245.4 189 61.9
SEGI_10566 Sequoiadendron giganteum HOM05D005273 ORTHO05D006195 2.6e-62 242.7 151 75.5
Peaxi162Scf00112g00113 Petunia axillaris HOM05D005273 ORTHO05D006195 1.6e-59 233.4 134 83.6
AagrBONN_evm.TU.Sc2ySwM_117.50 Anthoceros agrestis HOM05D005273 ORTHO05D006195 6.9e-55 218.0 154 69.5
Cre11.g467550 Chlamydomonas reinhardtii HOM05D005273 ORTHO05D006195 1.5e-54 216.9 184 60.3
CSS0022573 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 2.1e-51 206.5 192 58.9
MCO16G183 Micromonas commoda HOM05D005273 ORTHO05D006195 3.5e-51 205.7 189 55.6
Thecc.01G150900 Theobroma cacao HOM05D005273 ORTHO05D006195 5.1e-50 201.8 119 83.2
PRCOL_00003989 Prasinoderma coloniale HOM05D005273 ORTHO05D006195 5.6e-49 198.4 189 51.9
AUR62024621 Chenopodium quinoa HOM05D005273 ORTHO05D006195 4.2e-44 182.2 101 86.1
Haze_27262 Corylus avellana HOM05D005273 ORTHO05D006195 5.4e-44 181.8 184 49.5
AUR62011723 Chenopodium quinoa HOM05D005273 ORTHO05D006195 1.6e-43 180.3 104 81.7
Atru.chr6.2976 Acer truncatum HOM05D005273 ORTHO05D006195 1.6e-40 170.2 99 82.8
EL10Ac9g21222 Beta vulgaris HOM05D005273 ORTHO05D006195 4.8e-32 142.1 179 46.9
BolC1t01684H Brassica oleracea HOM05D005273 ORTHO05D006195 7.6e-30 134.8 82 75.6
Atru.chr6.2977 Acer truncatum HOM05D005273 ORTHO05D006195 6.3e-24 115.2 65 84.6
TPR.G7356 Trifolium pratense HOM05D005273 ORTHO05D006195 1.2e-19 100.9 56 85.7
Lalb_Chr09g0333161 Lupinus albus HOM05D005273 ORTHO05D006195 2.7e-19 99.8 87 58.6
Cfa022577 Carpinus fangiana HOM05D005273 ORTHO05D006195 4.6e-19 99.0 183 36.1
Lj3g0005703 Lotus japonicus HOM05D002777 ORTHO05D001516 1.3e-16 90.9 54 75.9
Oeu007130.1 Olea europaea HOM05D005273 ORTHO05D006195 1.1e-12 77.8 170 32.4
BcaNung01011 Brassica carinata HOM05D005273 ORTHO05D006195 1.9e-12 77.0 67 65.7
TPR.G31736 Trifolium pratense HOM05D005273 ORTHO05D006195 4.2e-12 75.9 45 75.6
AUR62036776 Chenopodium quinoa HOM05D005273 ORTHO05D006195 1.0e-10 71.2 55 65.5


User provided reference genes

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