Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1C6G5 Lonicera japonica HOM05D005784 ORTHO05D007803 3.5e-91 338.2 163 100.0
Gohir.A11G105900 Gossypium hirsutum HOM05D005784 ORTHO05D007803 4.0e-79 298.1 161 85.7
Gohir.D11G110800 Gossypium hirsutum HOM05D005784 ORTHO05D007803 6.9e-79 297.4 161 85.7
Gorai.007G118500 Gossypium raimondii HOM05D005784 ORTHO05D007803 6.9e-79 297.4 161 85.7
Duzib133G0630 Durio zibethinus HOM05D005784 ORTHO05D007803 1.2e-78 296.6 159 86.2
Thecc.01G327300 Theobroma cacao HOM05D005784 ORTHO05D007803 1.2e-78 296.6 159 87.4
Actinidia25875 Actinidia chinensis HOM05D005784 ORTHO05D007803 1.5e-78 296.2 161 87.6
CSS0010584 Camellia sinensis var. sinensis HOM05D005784 ORTHO05D007803 2.6e-78 295.4 161 87.0
DCAR_002944 Daucus carota HOM05D005784 ORTHO05D007803 7.6e-78 293.9 157 86.6
CANSAT25G3716 Cannabis sativa HOM05D005784 ORTHO05D007803 1.0e-77 293.5 159 85.5
Rhsim01G0293700 Rhododendron simsii HOM05D005784 ORTHO05D007803 6.5e-77 290.8 161 83.2
COL.COLO4_23104 Corchorus olitorius HOM05D005784 ORTHO05D007803 8.4e-77 290.4 160 83.8
Migut.D00007 Erythranthe guttata HOM05D005784 ORTHO05D007803 8.4e-77 290.4 159 84.9
Migut.N00893 Erythranthe guttata HOM05D005784 ORTHO05D007803 1.9e-76 289.3 159 84.9
Oeu052593.2 Olea europaea HOM05D005784 ORTHO05D007803 2.5e-76 288.9 159 83.6
Prupe.3G001200 Prunus persica HOM05D005784 ORTHO05D007803 3.2e-76 288.5 161 83.9
Cc01_g21730 Coffea canephora HOM05D005784 ORTHO05D007803 4.2e-76 288.1 157 84.7
Atru.chr5.839 Acer truncatum HOM05D005784 ORTHO05D007803 5.5e-76 287.7 161 82.0
Cfa004924 Carpinus fangiana HOM05D000351 ORTHO05D007803 5.5e-76 287.7 159 84.9
QL09p037402 Quercus lobata HOM05D005784 ORTHO05D007803 7.1e-76 287.3 161 82.0
Aqoxy5G02861 Aquilegia oxysepala HOM05D005784 ORTHO05D007803 1.2e-75 286.6 159 81.8
GSVIVG01028229001 Vitis vinifera HOM05D005784 ORTHO05D007803 1.6e-75 286.2 161 82.0
Dinv12073 Davidia involucrata HOM05D005784 ORTHO05D007803 2.1e-75 285.8 163 84.0
Nn4g25319 Nelumbo nucifera HOM05D005784 ORTHO05D007803 2.1e-75 285.8 161 79.5
FvH4_1g26110 Fragaria vesca HOM05D005784 ORTHO05D007803 3.5e-75 285.0 161 81.4
FAN19G2824 Fragaria x ananassa HOM05D005784 ORTHO05D007803 3.5e-75 285.0 161 81.4
SGA_v2.0_scaffold417G51242 Striga asiatica HOM05D005784 ORTHO05D007803 3.5e-75 285.0 157 83.4
Eucgr.A00993 Eucalyptus grandis HOM05D005784 ORTHO05D007803 4.6e-75 284.6 159 83.6
RcHm_v2.0_Chr3g0485611 Rosa chinensis HOM05D005784 ORTHO05D007803 4.6e-75 284.6 161 81.4
FAN26G2096 Fragaria x ananassa HOM05D005784 ORTHO05D007803 1.0e-74 283.5 161 81.4
ClCG11G000360 Citrullus lanatus HOM05D005784 ORTHO05D007803 1.8e-74 282.7 159 81.1
FAN28G2925 Fragaria x ananassa HOM05D005784 ORTHO05D007803 1.8e-74 282.7 162 80.2
PGR042G0128 Punica granatum HOM05D005784 ORTHO05D007803 1.8e-74 282.7 159 82.4
MSTRG.18053 Avicennia marina HOM05D005784 ORTHO05D007803 2.3e-74 282.3 159 83.0
Lalb_Chr02g0147261 Lupinus albus HOM05D005784 ORTHO05D007803 2.3e-74 282.3 159 79.2
Nitab4.5_0008825g0010 Nicotiana tabacum HOM05D005784 ORTHO05D007803 2.3e-74 282.3 158 82.3
EL10Ac1g01825 Beta vulgaris HOM05D005784 ORTHO05D007803 3.0e-74 282.0 159 81.1
Glyma.10G139300 Glycine max HOM05D005784 ORTHO05D007803 3.9e-74 281.6 159 79.9
Lalb_Chr06g0167151 Lupinus albus HOM05D005784 ORTHO05D007803 5.1e-74 281.2 159 80.5
Manes.05G007100 Manihot esculenta HOM05D005784 ORTHO05D007803 5.1e-74 281.2 161 79.5
Sopen01g030570 Solanum pennellii HOM05D005784 ORTHO05D007803 5.1e-74 281.2 158 81.0
Aqoxy2G02413 Aquilegia oxysepala HOM05D005784 ORTHO05D007803 6.7e-74 280.8 159 79.9
Solyc01g068640.3 Solanum lycopersicum HOM05D005784 ORTHO05D007803 6.7e-74 280.8 158 80.4
CAN.G179.27 Capsicum annuum HOM05D005784 ORTHO05D007803 8.7e-74 280.4 158 81.6
Cpa.g.sc57.39 Carica papaya HOM05D005784 ORTHO05D007803 8.7e-74 280.4 159 81.8
FAN23G2435 Fragaria x ananassa HOM05D005784 ORTHO05D007803 8.7e-74 280.4 161 80.7
Glyma.02G006500 Glycine max HOM05D005784 ORTHO05D007803 1.5e-73 279.6 159 79.2
TAR362G0637 Trochodendron aralioides HOM05D005784 ORTHO05D007803 1.5e-73 279.6 159 80.5
TAR362G1337 Trochodendron aralioides HOM05D005784 ORTHO05D007803 1.9e-73 279.3 159 80.5
Nitab4.5_0003092g0090 Nicotiana tabacum HOM05D005784 ORTHO05D007803 2.5e-73 278.9 158 81.6
Potri.002G185400 Populus trichocarpa HOM05D005784 ORTHO05D007803 2.5e-73 278.9 159 80.5
Ciclev10019335m.g Citrus clementina HOM05D005784 ORTHO05D007803 3.3e-73 278.5 159 80.5
DCAR_005710 Daucus carota HOM05D005784 ORTHO05D007803 3.3e-73 278.5 168 76.8
Peaxi162Scf00309g00620 Petunia axillaris HOM05D005784 ORTHO05D007803 3.3e-73 278.5 158 81.0
MD09G1291600 Malus domestica HOM05D005784 ORTHO05D007803 4.3e-73 278.1 158 79.7
Sc05g0000040 Simmondsia chinensis HOM05D005784 ORTHO05D007803 4.3e-73 278.1 159 80.5
arahy.Tifrunner.gnm1.ann1.AZ9DWX Arachis hypogaea HOM05D005784 ORTHO05D007803 5.7e-73 277.7 159 76.7
TWI59G1466 Tripterygium wilfordii HOM05D005784 ORTHO05D007803 5.7e-73 277.7 159 79.2
MBI18_g03858_MAGBIO Magnolia biondii HOM05D005784 ORTHO05D007803 7.4e-73 277.3 158 79.1
HanXRQChr06g0167951 Helianthus annuus HOM05D005784 ORTHO05D007803 9.7e-73 276.9 158 81.0
Psat6g157920 Pisum sativum HOM05D005784 ORTHO05D007803 9.7e-73 276.9 158 81.0
Sed0007139 Sechium edule HOM05D005784 ORTHO05D007803 9.7e-73 276.9 159 79.9
Ca_10232_v3 Cicer arietinum L. HOM05D005784 ORTHO05D007803 2.2e-72 275.8 159 78.0
Medtr1g085610 Medicago truncatula HOM05D005784 ORTHO05D007803 2.2e-72 275.8 158 79.7
CiPaw.08G082400 Carya illinoinensis HOM05D005784 ORTHO05D007803 3.7e-72 275.0 161 78.3
AUR62043318 Chenopodium quinoa HOM05D005784 ORTHO05D007803 3.7e-72 275.0 159 79.9
Phvul.007G208100 Phaseolus vulgaris HOM05D005784 ORTHO05D007803 3.7e-72 275.0 158 78.5
TPR.G3030 Trifolium pratense HOM05D005784 ORTHO05D007803 4.8e-72 274.6 158 78.5
AUR62035184 Chenopodium quinoa HOM05D005784 ORTHO05D007803 1.1e-71 273.5 159 79.9
MELO3C026475.2 Cucumis melo HOM05D005784 ORTHO05D007803 1.8e-71 272.7 159 77.4
Lsat_1_v5_gn_8_167141 Lactuca sativa HOM05D005784 ORTHO05D007803 1.8e-71 272.7 161 78.3
Aa31LG5G1370 Aethionema arabicum HOM05D005784 ORTHO05D007803 3.1e-71 271.9 159 77.4
VMungo0720G0010 Vigna mungo HOM05D005784 ORTHO05D007803 3.1e-71 271.9 158 77.2
Lj5g0003944 Lotus japonicus HOM05D005784 ORTHO05D007803 5.3e-71 271.2 158 77.8
ATR0693G326 Amborella trichopoda HOM05D005784 ORTHO05D007803 1.2e-70 270.0 156 78.8
BcaB01g02124 Brassica carinata HOM05D005784 ORTHO05D007803 1.5e-70 269.6 159 78.0
BolC9t53062H Brassica oleracea HOM05D005784 ORTHO05D007803 1.5e-70 269.6 159 78.0
HPP92_017034 Vanilla planifolia HOM05D005784 ORTHO05D007803 1.5e-70 269.6 158 75.9
SHI19975 Sapria himalayana HOM05D005784 ORTHO05D000023 2.0e-70 269.2 161 77.6
AL6G51690 Arabidopsis lyrata HOM05D005784 ORTHO05D007803 2.6e-70 268.9 159 77.4
Thhalv10028510m.g Eutrema salsugineum HOM05D005784 ORTHO05D007803 2.6e-70 268.9 159 77.4
HPP92_016969 Vanilla planifolia HOM05D005784 ORTHO05D007803 2.6e-70 268.9 158 75.9
BcaC04g24079 Brassica carinata HOM05D005784 ORTHO05D007803 3.4e-70 268.5 159 77.4
C09p01280 Brassica napus HOM05D005784 ORTHO05D007803 3.4e-70 268.5 159 77.4
A09p01190 Brassica napus HOM05D005784 ORTHO05D007803 4.5e-70 268.1 159 77.4
BraA09t35789Z Brassica rapa HOM05D005784 ORTHO05D007803 4.5e-70 268.1 159 77.4
CDE09G0629 Ceratophyllum demersum HOM05D005784 ORTHO05D007803 5.9e-70 267.7 156 79.5
AT4G01660 Arabidopsis thaliana HOM05D005784 ORTHO05D007803 7.7e-70 267.3 159 76.7
Zm00001eb340520 Zea mays HOM05D005784 ORTHO05D007803 1.3e-69 266.5 158 75.3
THA.LOC104815912 Tarenaya hassleriana HOM05D005784 ORTHO05D007803 2.2e-69 265.8 161 75.8
Carub.0006s3555 Capsella rubella HOM05D005784 ORTHO05D007803 3.8e-69 265.0 159 76.1
CsaV3_5G036980 Cucumis sativus L. HOM05D005784 ORTHO05D007803 3.8e-69 265.0 159 75.5
Os01g0318700 Oryza sativa ssp. japonica HOM05D005784 ORTHO05D007803 3.8e-69 265.0 159 73.6
Sp6g01550 Schrenkiella parvula HOM05D005784 ORTHO05D007803 8.5e-69 263.8 159 76.1
PSO357G0013 Papaver somniferum HOM05D005784 ORTHO05D007803 1.4e-68 263.1 159 75.5
CARHR250010 Cardamine hirsuta HOM05D005784 ORTHO05D007803 7.2e-68 260.8 159 74.8
PSO170G5067 Papaver somniferum HOM05D005784 ORTHO05D007803 7.2e-68 260.8 159 74.8
AagrBONN_evm.TU.Sc2ySwM_228.4566 Anthoceros agrestis HOM05D005784 ORTHO05D007803 3.6e-67 258.5 156 76.3
SEGI_33686 Sequoiadendron giganteum HOM05D005784 ORTHO05D007803 1.4e-66 256.5 158 72.8
SMO146G0128 Selaginella moellendorffii HOM05D005784 ORTHO05D007803 1.8e-63 246.1 154 73.4
ECA236G2058 Erigeron canadensis HOM05D006834 ORTHO05D007803 1.3e-61 240.0 140 78.6
Mapoly0064s0089 Marchantia polymorpha HOM05D005784 ORTHO05D007803 2.2e-61 239.2 158 69.6
CBR_g37217 Chara braunii HOM05D005784 ORTHO05D007803 3.3e-57 225.3 143 71.3
Duzib138G0454 Durio zibethinus HOM05D005784 ORTHO05D007803 6.3e-56 221.1 120 85.8
vmacro15093 Vaccinium macrocarpon HOM05D005784 ORTHO05D007803 1.7e-53 213.0 122 82.0
Cre10.g429800 Chlamydomonas reinhardtii HOM05D005784 ORTHO05D007803 1.9e-52 209.5 154 60.4
Hma1.2p1_0484F.1_g163010 Hydrangea macrophylla HOM05D005784 ORTHO05D007803 9.4e-52 207.2 119 84.9
MCO09G446 Micromonas commoda HOM05D005784 ORTHO05D007803 2.1e-51 206.1 160 58.8
CDE09G1383 Ceratophyllum demersum HOM05D005784 ORTHO05D007803 2.0e-49 199.5 118 78.8
PRCOL_00004655 Prasinoderma coloniale HOM05D005784 ORTHO05D007803 3.5e-46 188.7 153 58.8
unitig_90.g27449 Utricularia gibba HOM05D001090 ORTHO05D007803 1.8e-42 176.4 105 75.2
Cfa022580 Carpinus fangiana HOM05D005784 ORTHO05D007803 5.5e-36 154.8 152 46.7
Haze_26301 Corylus avellana HOM05D005784 ORTHO05D007803 1.6e-35 153.3 157 45.9
TAR629G3443 Trochodendron aralioides HOM05D006072 ORTHO05D007363 1.5e-09 67.0 42 73.8
Glyma.03G124801 Glycine max HOM05D005784 ORTHO05D004556 2.0e-09 66.6 40 72.5


User provided reference genes

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