Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1C671T2 Lonicera japonica HOM05D000007 ORTHO05D000039 1.7e-66 255.8 121 100.0
Lj1P593T30 Lonicera japonica HOM05D000007 ORTHO05D000039 1.8e-36 156.0 95 77.9
Lj1P664T31 Lonicera japonica HOM05D000007 ORTHO05D000039 2.2e-21 105.9 83 61.4
Lj1C599G12 Lonicera japonica HOM05D000007 ORTHO05D000039 9.2e-20 100.5 114 51.8
Lj1P537T15 Lonicera japonica HOM05D000007 ORTHO05D000039 4.6e-19 98.2 97 60.8
Lj1C674T7 Lonicera japonica HOM05D000007 ORTHO05D000039 6.0e-19 97.8 94 55.3
Lj1P529T7 Lonicera japonica HOM05D000007 ORTHO05D000039 6.0e-19 97.8 97 61.9
Lj1P591T21 Lonicera japonica HOM05D000007 ORTHO05D000039 6.0e-19 97.8 112 51.8
Lj1P673T32 Lonicera japonica HOM05D000007 ORTHO05D000039 1.7e-18 96.3 108 54.6
Lj1P664T40 Lonicera japonica HOM05D000007 ORTHO05D000039 2.3e-18 95.9 99 56.6
Lj1P670T34 Lonicera japonica HOM05D000007 ORTHO05D000039 5.0e-18 94.7 117 51.3
Lj1A671T53 Lonicera japonica HOM05D000007 ORTHO05D000039 1.1e-17 93.6 99 50.5
Lju1074C2T0 Lonicera japonica HOM05D000007 ORTHO05D000039 1.1e-17 93.6 94 53.2
Lj1P665T33 Lonicera japonica HOM05D000007 ORTHO05D000039 1.9e-17 92.8 94 57.4
Lj1P673T22 Lonicera japonica HOM05D000007 ORTHO05D000039 3.3e-17 92.0 96 54.2
Lj1P670T24 Lonicera japonica HOM05D000007 ORTHO05D000039 7.3e-17 90.9 96 54.2
Lj4C425G8 Lonicera japonica HOM05D000007 ORTHO05D000039 9.5e-17 90.5 84 56.0
Lj1P565T8 Lonicera japonica HOM05D000007 ORTHO05D000039 2.8e-16 89.0 96 53.1
Lj1C663T1 Lonicera japonica HOM05D000007 ORTHO05D000039 3.6e-16 88.6 91 50.5
Lj1C674T3 Lonicera japonica HOM05D000007 ORTHO05D000039 3.6e-16 88.6 85 52.9
Lj1P671T17 Lonicera japonica HOM05D000007 ORTHO05D000039 3.6e-16 88.6 85 52.9
Lj1P599T56 Lonicera japonica HOM05D000007 ORTHO05D000039 2.3e-15 85.9 98 46.9
Lj1C664T13 Lonicera japonica HOM05D000007 ORTHO05D000039 8.9e-15 84.0 96 52.1
Lju225C3T2 Lonicera japonica HOM05D000007 ORTHO05D000039 1.5e-14 83.2 106 47.2
Lj1C655T5 Lonicera japonica HOM05D000007 ORTHO05D000039 4.4e-14 81.6 103 47.6
Lj1P655T32 Lonicera japonica HOM05D000007 ORTHO05D000039 5.8e-14 81.3 123 42.3
Dinv19778 Davidia involucrata HOM05D000007 ORTHO05D000039 1.3e-13 80.1 98 45.9
Lju225C0T9 Lonicera japonica HOM05D000007 ORTHO05D000039 2.9e-13 79.0 84 52.4
Lju114C7G9 Lonicera japonica HOM05D000007 ORTHO05D000039 3.7e-13 78.6 84 51.2
Lju1609C1G1 Lonicera japonica HOM05D000007 ORTHO05D000039 8.3e-13 77.4 89 48.3
Dinv23704 Davidia involucrata HOM05D000007 ORTHO05D000039 3.2e-12 75.5 89 48.3
Lj1C671G9 Lonicera japonica HOM05D000007 ORTHO05D000039 5.4e-12 74.7 77 51.9
Lj1P660T10 Lonicera japonica HOM05D000007 ORTHO05D000039 5.4e-12 74.7 92 45.7
Lj1P662T13 Lonicera japonica HOM05D000007 ORTHO05D000039 5.4e-12 74.7 96 44.8
Lj1P665T26 Lonicera japonica HOM05D000007 ORTHO05D000039 9.2e-12 73.9 94 45.7
Dinv05355 Davidia involucrata HOM05D000007 ORTHO05D000039 1.2e-11 73.6 91 45.1
Dinv15480 Davidia involucrata HOM05D000007 ORTHO05D000039 2.7e-11 72.4 89 49.4
Lj1A662G33 Lonicera japonica HOM05D000007 ORTHO05D000039 3.5e-11 72.0 97 41.2
Manes.07G068800 Manihot esculenta HOM05D000007 ORTHO05D000039 3.5e-11 72.0 90 45.6
Lj8P116T38 Lonicera japonica HOM05D000007 ORTHO05D000039 4.6e-11 71.6 88 44.3
Lj1E674T0 Lonicera japonica HOM05D000007 ORTHO05D000039 1.7e-10 69.7 62 58.1
Lju1220A4G22 Lonicera japonica HOM05D000007 ORTHO05D000039 1.7e-10 69.7 102 41.2
Manes.07G007400 Manihot esculenta HOM05D000007 ORTHO05D000039 1.7e-10 69.7 89 44.9
FAN04G2331 Fragaria x ananassa HOM05D000007 ORTHO05D000039 3.9e-10 68.6 93 38.7
Manes.07G011100 Manihot esculenta HOM05D000007 ORTHO05D000039 3.9e-10 68.6 87 44.8
QL04p018974 Quercus lobata HOM05D000007 ORTHO05D000039 3.9e-10 68.6 89 40.4
QL04p019437 Quercus lobata HOM05D000007 ORTHO05D000039 3.9e-10 68.6 97 39.2
Dinv21276 Davidia involucrata HOM05D000007 ORTHO05D000039 5.1e-10 68.2 89 42.7
Nitab4.5_0003693g0050 Nicotiana tabacum HOM05D000007 ORTHO05D000039 5.1e-10 68.2 86 43.0
QL04p018852 Quercus lobata HOM05D000007 ORTHO05D000039 5.1e-10 68.2 97 39.2
QL04p019005 Quercus lobata HOM05D000007 ORTHO05D000039 6.6e-10 67.8 89 40.4
QL04p018990 Quercus lobata HOM05D000007 ORTHO05D000039 8.6e-10 67.4 94 41.5
Lj1C664T4 Lonicera japonica HOM05D000007 ORTHO05D000039 1.1e-09 67.0 99 39.4
QL04p019171 Quercus lobata HOM05D000007 ORTHO05D000039 1.1e-09 67.0 89 42.7
Actinidia07889 Actinidia chinensis HOM05D000007 ORTHO05D000039 1.5e-09 66.6 89 42.7
Ciclev10030186m.g Citrus clementina HOM05D000007 ORTHO05D000039 1.5e-09 66.6 89 42.7
QL04p019188 Quercus lobata HOM05D000007 ORTHO05D000039 1.9e-09 66.2 91 44.0
QL04p019545 Quercus lobata HOM05D000007 ORTHO05D000039 1.9e-09 66.2 89 42.7
Hma1.2p1_0178F.1_g078390 Hydrangea macrophylla HOM05D000007 ORTHO05D000039 2.5e-09 65.9 82 45.1
Lj1A656G15 Lonicera japonica HOM05D000007 ORTHO05D000039 3.3e-09 65.5 73 47.9
Dinv12702 Davidia involucrata HOM05D000007 ORTHO05D000039 4.3e-09 65.1 118 40.7
Migut.M00313 Erythranthe guttata HOM05D000007 ORTHO05D000039 4.3e-09 65.1 87 46.0
Lj5P299T4 Lonicera japonica HOM05D000007 ORTHO05D000039 4.3e-09 65.1 81 45.7
TWI31G0212 Tripterygium wilfordii HOM05D000007 ORTHO05D000039 4.3e-09 65.1 88 43.2
CSS0030918 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000039 5.6e-09 64.7 91 42.9
QL04p019108 Quercus lobata HOM05D000007 ORTHO05D000039 5.6e-09 64.7 91 42.9
QL04p019478 Quercus lobata HOM05D000007 ORTHO05D000039 5.6e-09 64.7 87 42.5
CSS0044141 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000039 7.3e-09 64.3 110 40.9
CSS0048184 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000039 7.3e-09 64.3 92 44.6
Migut.M00318 Erythranthe guttata HOM05D000007 ORTHO05D000039 7.3e-09 64.3 84 45.2
Manes.07G011000 Manihot esculenta HOM05D000007 ORTHO05D000039 7.3e-09 64.3 87 43.7
Hma1.2p1_1267F.1_g271540 Hydrangea macrophylla HOM05D000007 ORTHO05D000039 9.5e-09 63.9 104 37.5
Hma1.2p1_2614F.1_g325400 Hydrangea macrophylla HOM05D000007 ORTHO05D000039 9.5e-09 63.9 104 37.5
QL04p019425 Quercus lobata HOM05D000007 ORTHO05D000039 9.5e-09 63.9 95 40.0
CSS0030264 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000039 1.2e-08 63.5 91 42.9
Lj1P653T16 Lonicera japonica HOM05D000007 ORTHO05D000039 1.2e-08 63.5 95 42.1
QL04p019213 Quercus lobata HOM05D000007 ORTHO05D000039 1.2e-08 63.5 91 41.8
Solyc10g008580.1 Solanum lycopersicum HOM05D000007 ORTHO05D000039 1.2e-08 63.5 89 40.4
Haze_10070 Corylus avellana HOM05D000007 ORTHO05D000039 1.6e-08 63.2 88 40.9
Migut.M00308 Erythranthe guttata HOM05D000007 ORTHO05D000039 1.6e-08 63.2 84 44.0
MSTRG.6523 Avicennia marina HOM05D000007 ORTHO05D000039 2.1e-08 62.8 84 41.7
Lj1C674T8 Lonicera japonica HOM05D000007 ORTHO05D000039 2.1e-08 62.8 105 38.1
QL04p018944 Quercus lobata HOM05D000007 ORTHO05D000039 2.1e-08 62.8 93 40.9
QL04p019132 Quercus lobata HOM05D000007 ORTHO05D000039 2.1e-08 62.8 96 37.5
DCAR_019197 Daucus carota HOM05D000007 ORTHO05D000039 2.8e-08 62.4 94 41.5
Lj1P652T32 Lonicera japonica HOM05D000007 ORTHO05D000039 2.8e-08 62.4 95 42.1
Nitab4.5_0009868g0020 Nicotiana tabacum HOM05D000007 ORTHO05D000039 2.8e-08 62.4 99 40.4
Eucgr.C02180 Eucalyptus grandis HOM05D000007 ORTHO05D000039 3.6e-08 62.0 83 44.6
FAN04G2450 Fragaria x ananassa HOM05D000007 ORTHO05D000039 3.6e-08 62.0 92 37.0
Lj1P652T23 Lonicera japonica HOM05D000007 ORTHO05D000039 3.6e-08 62.0 90 38.9
Lj1C654T3 Lonicera japonica HOM05D000007 ORTHO05D000039 4.7e-08 61.6 88 43.2
QL04p019471 Quercus lobata HOM05D000007 ORTHO05D000039 4.7e-08 61.6 98 37.8
MELO3C014363.2 Cucumis melo HOM05D000007 ORTHO05D000039 6.2e-08 61.2 90 37.8
Migut.M00316 Erythranthe guttata HOM05D000007 ORTHO05D000039 6.2e-08 61.2 84 42.9
FvH4_5g33960 Fragaria vesca HOM05D000007 ORTHO05D000039 6.2e-08 61.2 92 38.0
FAN08G3168 Fragaria x ananassa HOM05D000007 ORTHO05D000039 6.2e-08 61.2 92 38.0
Potri.001G262900 Populus trichocarpa HOM05D000007 ORTHO05D000039 6.2e-08 61.2 88 39.8
QL04p019040 Quercus lobata HOM05D000007 ORTHO05D000039 6.2e-08 61.2 89 37.1
Migut.M00307 Erythranthe guttata HOM05D000007 ORTHO05D000039 8.1e-08 60.8 86 44.2
Peaxi162Scf00152g00825 Petunia axillaris HOM05D000007 ORTHO05D000039 8.1e-08 60.8 87 39.1
Peaxi162Scf00608g00048 Petunia axillaris HOM05D000007 ORTHO05D000039 8.1e-08 60.8 100 39.0
CSS0019634 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000039 1.1e-07 60.5 92 40.2
CSS0034858 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000039 1.1e-07 60.5 92 40.2
CSS0047811 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000039 1.1e-07 60.5 92 40.2
ClCG09G014060 Citrullus lanatus HOM05D000007 ORTHO05D000039 1.1e-07 60.5 90 37.8
Actinidia37850 Actinidia chinensis HOM05D000007 ORTHO05D000039 1.4e-07 60.1 89 42.7
CSS0017530 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000039 1.4e-07 60.1 85 38.8
CSS0045243 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000039 1.4e-07 60.1 91 44.0
Nitab4.5_0000635g0180 Nicotiana tabacum HOM05D000007 ORTHO05D000039 1.4e-07 60.1 99 38.4
QL04p019070 Quercus lobata HOM05D000007 ORTHO05D000039 1.4e-07 60.1 92 39.1
Sabra06G0009400 Salix brachista HOM05D000007 ORTHO05D000017 1.4e-07 60.1 102 36.3
FAN18G4160 Fragaria x ananassa HOM05D000007 ORTHO05D000039 1.8e-07 59.7 92 37.0
MD03G1028400 Malus domestica HOM05D000007 ORTHO05D000039 1.8e-07 59.7 92 38.0
QL04p019096 Quercus lobata HOM05D000007 ORTHO05D000039 1.8e-07 59.7 92 39.1
QL08p040468 Quercus lobata HOM05D000007 ORTHO05D000039 1.8e-07 59.7 97 37.1
Rhsim02G0167900 Rhododendron simsii HOM05D000007 ORTHO05D000039 1.8e-07 59.7 96 34.4
Sopen10g004400 Solanum pennellii HOM05D000007 ORTHO05D000039 1.8e-07 59.7 89 39.3
Lj1C654T13 Lonicera japonica HOM05D000007 ORTHO05D000039 2.3e-07 59.3 78 44.9
Manes.10G077179 Manihot esculenta HOM05D000007 ORTHO05D000039 2.3e-07 59.3 89 39.3
Potri.006G013000 Populus trichocarpa HOM05D000007 ORTHO05D000017 2.3e-07 59.3 101 35.6
QL04p019060 Quercus lobata HOM05D000007 ORTHO05D000039 2.3e-07 59.3 90 41.1
CSS0036577 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000039 3.1e-07 58.9 90 38.9
Dinv24452 Davidia involucrata HOM05D000007 ORTHO05D000039 3.1e-07 58.9 89 37.1
PGSC0003DMG400010275 Solanum tuberosum HOM05D000007 ORTHO05D000039 3.1e-07 58.9 92 38.0
QL07p003609 Quercus lobata HOM05D000007 ORTHO05D000039 4.0e-07 58.5 82 40.2
QL08p040393 Quercus lobata HOM05D000007 ORTHO05D000039 4.0e-07 58.5 85 40.0
Cfa000498 Carpinus fangiana HOM05D000007 ORTHO05D000039 5.2e-07 58.2 89 39.3
Lj1A671T55 Lonicera japonica HOM05D000007 ORTHO05D000039 5.2e-07 58.2 105 36.2
Rhsim06G0124400 Rhododendron simsii HOM05D001399 ORTHO05D000039 5.2e-07 58.2 93 41.9
Lj1P794T16 Lonicera japonica HOM05D000007 ORTHO05D000039 6.8e-07 57.8 107 36.4
PGSC0003DMG400044342 Solanum tuberosum HOM05D000007 ORTHO05D000039 6.8e-07 57.8 91 39.6
Lj1A530T29 Lonicera japonica HOM05D000007 ORTHO05D000039 8.9e-07 57.4 67 50.7
Lj1P654T46 Lonicera japonica HOM05D000007 ORTHO05D000039 8.9e-07 57.4 88 39.8
Lju1074C2T6 Lonicera japonica HOM05D000007 ORTHO05D000039 8.9e-07 57.4 60 53.3
Lju1601C0T10 Lonicera japonica HOM05D000007 ORTHO05D000039 8.9e-07 57.4 88 39.8
QL08p020282 Quercus lobata HOM05D000007 ORTHO05D000039 8.9e-07 57.4 87 42.5
CAN.G1360.7 Capsicum annuum HOM05D000007 ORTHO05D000039 1.2e-06 57.0 87 36.8
Haze_12717 Corylus avellana HOM05D000007 ORTHO05D000039 1.2e-06 57.0 87 40.2
MD03G1028100 Malus domestica HOM05D000007 ORTHO05D000039 1.2e-06 57.0 90 40.0
CiPaw.07G024100 Carya illinoinensis HOM05D000007 ORTHO05D000039 1.5e-06 56.6 89 38.2
CsaV3_6G037490 Cucumis sativus L. HOM05D000007 ORTHO05D000039 1.5e-06 56.6 91 37.4
Hma1.2p1_0036F.1_g023650 Hydrangea macrophylla HOM05D000007 ORTHO05D000039 1.5e-06 56.6 87 42.5
PGSC0003DMG400021673 Solanum tuberosum HOM05D000007 ORTHO05D000039 1.5e-06 56.6 93 35.5
PGSC0003DMG402021671 Solanum tuberosum HOM05D000007 ORTHO05D000039 2.0e-06 56.2 91 36.3
CAN.G650.5 Capsicum annuum HOM05D000007 ORTHO05D000039 2.6e-06 55.8 86 39.5
Cfa000500 Carpinus fangiana HOM05D000007 ORTHO05D000039 2.6e-06 55.8 89 37.1
Haze_12718 Corylus avellana HOM05D000007 ORTHO05D000039 2.6e-06 55.8 89 38.2
Lj1C654T14 Lonicera japonica HOM05D000007 ORTHO05D000039 2.6e-06 55.8 94 40.4
Lj1P663T62 Lonicera japonica HOM05D000007 ORTHO05D000039 2.6e-06 55.8 90 38.9
Lj7P502T13 Lonicera japonica HOM05D000007 ORTHO05D000039 2.6e-06 55.8 82 41.5
Lju1601A0G41 Lonicera japonica HOM05D000007 ORTHO05D000039 2.6e-06 55.8 94 40.4
SGA_v2.0_scaffold4G02111 Striga asiatica HOM05D000007 ORTHO05D000039 2.6e-06 55.8 107 32.7
TWI31G0102 Tripterygium wilfordii HOM05D000007 ORTHO05D000039 2.6e-06 55.8 82 39.0
vmacro08441 Vaccinium macrocarpon HOM05D000007 ORTHO05D000039 2.6e-06 55.8 88 35.2
Cc05_g06410 Coffea canephora HOM05D000007 ORTHO05D000039 3.4e-06 55.5 96 33.3
Manes.07G010900 Manihot esculenta HOM05D000007 ORTHO05D000039 3.4e-06 55.5 88 38.6
Rhsim02G0168100 Rhododendron simsii HOM05D000007 ORTHO05D000039 3.4e-06 55.5 91 39.6
Rhsim11G0051200 Rhododendron simsii HOM05D000007 ORTHO05D000039 3.4e-06 55.5 91 37.4
vmacro12417 Vaccinium macrocarpon HOM05D000007 ORTHO05D000039 3.4e-06 55.5 87 41.4
Cfa000501 Carpinus fangiana HOM05D000007 ORTHO05D000039 5.8e-06 54.7 89 40.4
Cfa004551 Carpinus fangiana HOM05D000007 ORTHO05D000039 5.8e-06 54.7 107 35.5
SalBow7G4817 Salvia bowleyana HOM05D000007 ORTHO05D000039 5.8e-06 54.7 87 37.9
CAN.G168.22 Capsicum annuum HOM05D000007 ORTHO05D000039 7.6e-06 54.3 89 36.0
Cfa000449 Carpinus fangiana HOM05D000007 ORTHO05D000039 7.6e-06 54.3 89 38.2
Nitab4.5_0003693g0040 Nicotiana tabacum HOM05D000007 ORTHO05D000039 7.6e-06 54.3 111 35.1
Nitab4.5_0000990g0050 Nicotiana tabacum HOM05D000007 ORTHO05D000039 9.9e-06 53.9 83 38.6


User provided reference genes

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