Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1C589T0 Lonicera japonica HOM05D004710 ORTHO05D005445 1.1e-290 1002.7 531 100.0
GSVIVG01020835001 Vitis vinifera HOM05D004710 ORTHO05D005445 2.3e-168 596.3 534 68.0
CSS0019642 Camellia sinensis var. sinensis HOM05D004710 ORTHO05D005445 3.5e-164 582.4 531 66.9
QL08p045042 Quercus lobata HOM05D004710 ORTHO05D005445 3.3e-162 575.9 529 65.4
QL93p2016_0028 Quercus lobata HOM05D004710 ORTHO05D005445 3.3e-162 575.9 529 65.4
Potri.005G205300 Populus trichocarpa HOM05D004710 ORTHO05D005445 1.4e-160 570.5 534 63.7
CiPaw.04G137800 Carya illinoinensis HOM05D004710 ORTHO05D005445 2.0e-159 566.6 530 64.2
Ciclev10031314m.g Citrus clementina HOM05D004710 ORTHO05D005445 3.4e-159 565.8 533 64.5
Manes.01G130800 Manihot esculenta HOM05D004710 ORTHO05D005445 4.4e-159 565.5 533 64.2
Cc05_g01390 Coffea canephora HOM05D004710 ORTHO05D005445 9.9e-159 564.3 535 64.7
Potri.002G057300 Populus trichocarpa HOM05D004710 ORTHO05D005445 1.3e-158 563.9 538 63.6
Atru.chr6.2043 Acer truncatum HOM05D004710 ORTHO05D005445 2.2e-158 563.1 533 64.0
Prupe.3G177900 Prunus persica HOM05D004710 ORTHO05D005445 1.9e-157 560.1 533 63.6
Cfa023545 Carpinus fangiana HOM05D004710 ORTHO05D005445 1.2e-156 557.4 533 62.7
Thecc.01G168300 Theobroma cacao HOM05D004710 ORTHO05D005445 2.1e-156 556.6 533 63.6
TWI59G0681 Tripterygium wilfordii HOM05D004710 ORTHO05D005445 3.5e-156 555.8 531 64.2
Hma1.2p1_0073F.1_g038510 Hydrangea macrophylla HOM05D004710 ORTHO05D005445 2.3e-155 553.1 536 64.4
COL.COLO4_38396 Corchorus olitorius HOM05D004710 ORTHO05D005445 3.9e-155 552.4 531 62.3
Rhsim12G0010700 Rhododendron simsii HOM05D004710 ORTHO05D005445 5.1e-155 552.0 531 64.0
Nn7g38035 Nelumbo nucifera HOM05D004710 ORTHO05D005445 1.9e-154 550.1 533 63.2
vmacro08738 Vaccinium macrocarpon HOM05D004710 ORTHO05D005445 3.3e-154 549.3 533 63.8
TAR624G0695 Trochodendron aralioides HOM05D004710 ORTHO05D005445 8.1e-153 544.7 528 63.6
CANSAT64G1857 Cannabis sativa HOM05D004710 ORTHO05D005445 3.1e-152 542.7 527 63.0
Duzib133G0803 Durio zibethinus HOM05D004710 ORTHO05D005445 3.1e-152 542.7 523 63.5
Sabra05G0156000 Salix brachista HOM05D004710 ORTHO05D005445 3.1e-152 542.7 538 61.7
TPR.G10151 Trifolium pratense HOM05D004710 ORTHO05D005445 1.2e-151 540.8 535 61.5
FvH4_6g38730 Fragaria vesca HOM05D004710 ORTHO05D005445 2.6e-151 539.7 526 62.5
Glyma.02G284400 Glycine max HOM05D004710 ORTHO05D005445 3.4e-151 539.3 533 61.5
Aqoxy4G00042 Aquilegia oxysepala HOM05D004710 ORTHO05D005445 4.4e-151 538.9 533 62.1
Gohir.A08G051500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 5.8e-151 538.5 532 62.0
MSTRG.14902 Avicennia marina HOM05D004710 ORTHO05D005445 1.7e-150 537.0 530 60.8
Gohir.D08G061300 Gossypium hirsutum HOM05D004710 ORTHO05D005445 2.2e-150 536.6 532 61.8
Duzib211G0680 Durio zibethinus HOM05D004710 ORTHO05D005445 2.9e-150 536.2 521 63.0
Glyma.14G030600 Glycine max HOM05D004710 ORTHO05D005445 2.9e-150 536.2 533 61.2
Lalb_Chr10g0106551 Lupinus albus HOM05D004710 ORTHO05D005445 1.9e-149 533.5 532 60.7
Medtr5g091000 Medicago truncatula HOM05D004710 ORTHO05D005445 5.4e-149 531.9 535 60.6
Psat2g017280 Pisum sativum HOM05D004710 ORTHO05D005445 5.4e-149 531.9 535 61.1
Phvul.008G194500 Phaseolus vulgaris HOM05D004710 ORTHO05D005445 7.1e-149 531.6 534 60.7
Gorai.004G063400 Gossypium raimondii HOM05D004710 ORTHO05D005445 1.2e-148 530.8 532 61.5
Eucgr.A02027 Eucalyptus grandis HOM05D004710 ORTHO05D005445 1.6e-148 530.4 534 61.6
TAR625G1186 Trochodendron aralioides HOM05D004710 ORTHO05D005445 1.6e-148 530.4 528 62.3
Solyc05g021100.2 Solanum lycopersicum HOM05D004710 ORTHO05D005445 2.7e-148 529.6 537 61.1
FAN05G2509 Fragaria x ananassa HOM05D004710 ORTHO05D005445 3.5e-148 529.3 546 60.8
PGR042G2540 Punica granatum HOM05D004710 ORTHO05D005445 3.5e-148 529.3 534 61.6
Sopen05g017300 Solanum pennellii HOM05D004710 ORTHO05D005445 6.0e-148 528.5 537 60.9
MD17G1134500 Malus domestica HOM05D004710 ORTHO05D005445 7.8e-148 528.1 532 60.5
arahy.Tifrunner.gnm1.ann1.3YJ1U6 Arachis hypogaea HOM05D004710 ORTHO05D005445 1.1e-146 524.2 533 60.4
Cpa.g.sc50.115 Carica papaya HOM05D004710 ORTHO05D005445 1.1e-146 524.2 533 61.4
VMungo0647G1334 Vigna mungo HOM05D004710 ORTHO05D005445 2.5e-146 523.1 517 61.3
Peaxi162Scf00416g00116 Petunia axillaris HOM05D004710 ORTHO05D005445 4.3e-146 522.3 538 61.5
FAN02G0505 Fragaria x ananassa HOM05D004710 ORTHO05D005445 7.3e-146 521.5 556 59.4
Gorai.001G211100 Gossypium raimondii HOM05D004710 ORTHO05D005445 7.3e-146 521.5 533 60.2
Ca_06262_v3 Cicer arietinum L. HOM05D004710 ORTHO05D005445 1.3e-145 520.8 534 60.9
Gohir.A07G182700 Gossypium hirsutum HOM05D004710 ORTHO05D005445 1.3e-145 520.8 533 60.4
arahy.Tifrunner.gnm1.ann1.BVM079 Arachis hypogaea HOM05D004710 ORTHO05D005445 2.1e-145 520.0 534 60.1
ClCG07G010740 Citrullus lanatus HOM05D004710 ORTHO05D005445 2.8e-145 519.6 531 60.5
SGA_v2.0_scaffold73G24477 Striga asiatica HOM05D004710 ORTHO05D005445 1.1e-144 517.7 529 59.9
Sc15g0002190 Simmondsia chinensis HOM05D004710 ORTHO05D005445 1.4e-144 517.3 531 60.5
MELO3C016183.2 Cucumis melo HOM05D004710 ORTHO05D005445 6.9e-144 515.0 525 59.8
CsaV3_4G007580 Cucumis sativus L. HOM05D004710 ORTHO05D005445 2.0e-143 513.5 531 59.9
Migut.M00073 Erythranthe guttata HOM05D004710 ORTHO05D005445 2.0e-143 513.5 537 59.8
DCAR_013324 Daucus carota HOM05D004710 ORTHO05D005445 3.4e-143 512.7 527 61.7
FAN14G4495 Fragaria x ananassa HOM05D004710 ORTHO05D005445 5.8e-143 511.9 535 60.2
ECA246G2799 Erigeron canadensis HOM05D004710 ORTHO05D005445 4.9e-142 508.8 535 59.3
MD09G1148200 Malus domestica HOM05D004710 ORTHO05D005445 1.1e-141 507.7 503 62.4
Lalb_Chr04g0248931 Lupinus albus HOM05D004710 ORTHO05D005445 7.1e-141 505.0 530 58.3
EL10Ac9g22830 Beta vulgaris HOM05D004710 ORTHO05D005445 1.2e-140 504.2 543 56.7
Sabra02G0046700 Salix brachista HOM05D004710 ORTHO05D005445 2.1e-140 503.4 521 60.8
Actinidia06121 Actinidia chinensis HOM05D004710 ORTHO05D005445 4.6e-140 502.3 456 67.3
HanXRQChr06g0171641 Helianthus annuus HOM05D004710 ORTHO05D005445 7.9e-140 501.5 531 57.6
RcHm_v2.0_Chr2g0152261 Rosa chinensis HOM05D004710 ORTHO05D005445 1.7e-139 500.4 532 59.2
Actinidia11220 Actinidia chinensis HOM05D004710 ORTHO05D005445 2.3e-139 500.0 535 59.6
LjContig00049g0017244 Lotus japonicus HOM05D004710 ORTHO05D005445 6.6e-139 498.4 533 58.3
PSO675G4395 Papaver somniferum HOM05D004710 ORTHO05D005445 1.9e-138 496.9 535 58.5
HanXRQChr17g0541191 Helianthus annuus HOM05D004710 ORTHO05D005445 2.5e-138 496.5 534 57.9
Sp4g13350 Schrenkiella parvula HOM05D004710 ORTHO05D005445 5.6e-138 495.4 537 56.8
Sed0010176 Sechium edule HOM05D004710 ORTHO05D005445 1.3e-137 494.2 531 58.8
CARHR124360 Cardamine hirsuta HOM05D004710 ORTHO05D005445 1.6e-137 493.8 537 56.6
Eucgr.K01227 Eucalyptus grandis HOM05D004710 ORTHO05D005445 1.6e-137 493.8 529 59.0
Sed0002024 Sechium edule HOM05D004710 ORTHO05D005445 1.6e-137 493.8 531 58.4
Thhalv10016548m.g Eutrema salsugineum HOM05D004710 ORTHO05D005445 2.1e-137 493.4 537 56.4
Gohir.D07G189500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 8.1e-137 491.5 500 60.6
Carub.0004s1208 Capsella rubella HOM05D004710 ORTHO05D005445 2.4e-136 490.0 540 56.5
AL4G25830 Arabidopsis lyrata HOM05D004710 ORTHO05D005445 6.9e-136 488.4 537 56.2
AT2G30880 Arabidopsis thaliana HOM05D004710 ORTHO05D005445 9.0e-136 488.0 537 56.4
THA.LOC104800818 Tarenaya hassleriana HOM05D004710 ORTHO05D005445 3.4e-135 486.1 537 57.2
PSO675G5558 Papaver somniferum HOM05D004710 ORTHO05D005445 2.2e-134 483.4 536 57.8
BcaB06g28390 Brassica carinata HOM05D004710 ORTHO05D005445 4.9e-134 482.3 543 55.4
A04p23580 Brassica napus HOM05D004710 ORTHO05D005445 1.4e-133 480.7 540 55.6
Aa31LG5G6040 Aethionema arabicum HOM05D004710 ORTHO05D005445 3.2e-133 479.6 546 56.0
Lj6g0021308 Lotus japonicus HOM05D004710 ORTHO05D005445 2.7e-132 476.5 520 56.2
Lj6g0000252 Lotus japonicus HOM05D004710 ORTHO05D005445 7.9e-132 474.9 513 56.7
Lsat_1_v5_gn_3_35160 Lactuca sativa HOM05D004710 ORTHO05D005445 1.3e-131 474.2 557 54.6
ATR0763G198 Amborella trichopoda HOM05D004710 ORTHO05D005445 5.1e-131 472.2 527 56.4
Hund08425 Selenicereus undatus HOM05D004710 ORTHO05D005445 1.3e-129 467.6 524 55.2
C04p60020 Brassica napus HOM05D004710 ORTHO05D005445 4.8e-129 465.7 537 54.2
BolC4t27504H Brassica oleracea HOM05D004710 ORTHO05D005445 4.8e-129 465.7 537 54.2
BcaB06g28457 Brassica carinata HOM05D004710 ORTHO05D005445 4.0e-128 462.6 537 54.0
BraA04t17884Z Brassica rapa HOM05D004710 ORTHO05D005445 1.5e-127 460.7 540 54.4
Os03g0666200 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 1.5e-127 460.7 530 53.8
Zm00001eb065510 Zea mays HOM05D004710 ORTHO05D005445 4.5e-127 459.1 531 52.7
HPP92_018652 Vanilla planifolia HOM05D004710 ORTHO05D005445 1.4e-125 454.1 531 52.9
Nitab4.5_0003177g0030 Nicotiana tabacum HOM05D004710 ORTHO05D005445 2.5e-125 453.4 403 65.8
FAN09G1050 Fragaria x ananassa HOM05D004710 ORTHO05D005445 7.4e-122 441.8 548 54.2
Gohir.1Z049561 Gossypium hirsutum HOM05D004710 ORTHO05D005445 1.8e-112 410.6 391 61.9
MBI18_g07571_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 1.2e-111 407.9 515 53.6
AUR62015127 Chenopodium quinoa HOM05D004710 ORTHO05D005445 4.2e-109 399.4 522 51.1
Zm00001eb117740 Zea mays HOM05D004710 ORTHO05D005445 4.2e-109 399.4 510 48.6
CAN.G237.1 Capsicum annuum HOM05D004710 ORTHO05D005445 2.1e-108 397.1 472 57.0
Zm00001eb217790 Zea mays HOM05D004710 ORTHO05D005445 6.1e-108 395.6 497 50.7
Ah.01g013580 Amaranthus hybridus HOM05D004710 ORTHO05D005445 2.6e-106 390.2 510 50.0
SGA_v2.0_scaffold181G39713 Striga asiatica HOM05D004710 ORTHO05D005445 1.4e-101 374.4 525 50.5
PGR142G3117 Punica granatum HOM05D004710 ORTHO05D005445 2.7e-100 370.2 517 47.4
BcaB01g04076 Brassica carinata HOM05D004710 ORTHO05D005445 1.2e-95 354.8 534 46.8
BcaC01g06018 Brassica carinata HOM05D004710 ORTHO05D005445 1.6e-92 344.4 466 50.9
C03p20350 Brassica napus HOM05D004710 ORTHO05D005445 1.6e-92 344.4 466 50.9
BolC3t14413H Brassica oleracea HOM05D004710 ORTHO05D005445 1.6e-92 344.4 466 50.9
Nitab4.5_0000019g0200 Nicotiana tabacum HOM05D004710 ORTHO05D005445 2.7e-92 343.6 416 55.0
SEGI_28206 Sequoiadendron giganteum HOM05D004710 ORTHO05D005445 1.8e-88 330.9 491 45.4
Oeu040170.3 Olea europaea HOM05D004710 ORTHO05D005445 8.8e-83 312.0 514 43.8
Haze_13560 Corylus avellana HOM05D004710 ORTHO05D005445 5.4e-80 302.8 336 57.7
Dinv09874 Davidia involucrata HOM05D004710 ORTHO05D005445 7.3e-69 265.8 146 89.7
Aa31LG1G7230 Aethionema arabicum HOM05D004710 ORTHO05D005445 6.4e-65 252.7 304 52.0
FAN06G4649 Fragaria x ananassa HOM05D004710 ORTHO05D005445 6.6e-62 242.7 143 83.9
Mapoly0039s0099 Marchantia polymorpha HOM05D004710 ORTHO05D005445 1.9e-61 241.1 507 36.5
Pp3c23_16670 Physcomitrium patens HOM05D004710 ORTHO05D005445 1.4e-56 224.9 414 40.6
AUR62017588 Chenopodium quinoa HOM05D004710 ORTHO05D005445 2.4e-56 224.2 175 74.9
SMO169G0289 Selaginella moellendorffii HOM05D004710 ORTHO05D005445 1.5e-53 214.9 359 39.3
AagrBONN_evm.TU.Sc2ySwM_228.2862 Anthoceros agrestis HOM05D004710 ORTHO05D005445 1.6e-44 184.9 475 31.8
CBR_g48423 Chara braunii HOM05D004710 ORTHO05D005445 3.0e-38 164.1 442 33.5
FAN18G0865 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.2e-36 158.7 147 62.6
Pp3c13_22640 Physcomitrium patens HOM05D004710 ORTHO05D005445 6.9e-35 152.9 432 31.9
Dinv09873 Davidia involucrata HOM05D004710 ORTHO05D005445 9.9e-34 149.1 139 67.6
A03p17240 Brassica napus HOM05D004710 ORTHO05D005445 1.1e-32 145.6 241 46.5
Pp3c26_520 Physcomitrium patens HOM05D004710 ORTHO05D005445 2.4e-32 144.4 424 30.4
SHI10530 Sapria himalayana HOM05D000906 ORTHO05D000713 1.1e-21 109.0 185 41.1
Aa31LG1G7240 Aethionema arabicum HOM05D004710 ORTHO05D005445 2.1e-20 104.8 155 50.3
MBI18_g48251_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 4.8e-20 103.6 298 32.6
BraA03t10998Z Brassica rapa HOM05D004710 ORTHO05D005445 1.9e-16 91.7 51 86.3
BraA03t10997Z Brassica rapa HOM05D004710 ORTHO05D005445 5.6e-13 80.1 71 69.0
AUR62017587 Chenopodium quinoa HOM05D004710 ORTHO05D005445 2.8e-12 77.8 99 49.5
Os05g0128700 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 8.2e-12 76.3 61 62.3
Os12g0505950 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 8.2e-12 76.3 61 62.3
Os07g0138100 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 2.4e-11 74.7 46 65.2
Os05g0153901 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 3.4e-10 70.9 61 59.0
FAN08G2380 Fragaria x ananassa HOM05D004710 ORTHO05D005445 5.8e-10 70.1 36 83.3
Zm00001eb299690 Zea mays HOM05D004710 ORTHO05D005445 4.9e-09 67.0 58 67.2
Haze_13559 Corylus avellana HOM05D004710 ORTHO05D005445 2.7e-07 61.2 31 87.1
Lj6g0000199 Lotus japonicus HOM05D004710 ORTHO05D005445 3.0e-06 57.8 34 70.6


User provided reference genes

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