Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1C587G1 Lonicera japonica HOM05D004141 ORTHO05D005416 4.9e-224 780.8 391 100.0
Dinv15000 Davidia involucrata HOM05D004141 ORTHO05D005416 1.2e-182 643.3 410 80.0
vmacro09491 Vaccinium macrocarpon HOM05D004141 ORTHO05D005416 1.8e-181 639.4 399 78.9
CSS0023821 Camellia sinensis var. sinensis HOM05D004141 ORTHO05D005416 2.0e-180 636.0 410 78.0
MD11G1264500 Malus domestica HOM05D004141 ORTHO05D005416 6.3e-179 630.9 407 77.9
Actinidia18802 Actinidia chinensis HOM05D004141 ORTHO05D005416 1.1e-178 630.2 409 76.5
RcHm_v2.0_Chr5g0030771 Rosa chinensis HOM05D004141 ORTHO05D005416 1.4e-178 629.8 408 76.5
Sopen06g033870 Solanum pennellii HOM05D004141 ORTHO05D005416 1.8e-178 629.4 410 76.6
FvH4_3g18220 Fragaria vesca HOM05D004141 ORTHO05D005416 4.1e-178 628.2 403 77.4
Solyc06g082490.4 Solanum lycopersicum HOM05D004141 ORTHO05D005416 5.4e-178 627.9 410 76.3
COL.COLO4_17535 Corchorus olitorius HOM05D004141 ORTHO05D005416 7.0e-178 627.5 407 77.4
PGSC0003DMG400030465 Solanum tuberosum HOM05D004141 ORTHO05D005416 7.0e-178 627.5 410 76.6
TAR627G0990 Trochodendron aralioides HOM05D004141 ORTHO05D005416 2.0e-177 625.9 416 76.0
QL06p023676 Quercus lobata HOM05D004141 ORTHO05D005416 5.9e-177 624.4 405 77.3
Hma1.2p1_1016F.1_g248060 Hydrangea macrophylla HOM05D004141 ORTHO05D005416 1.3e-176 623.2 402 78.9
Nitab4.5_0000383g0110 Nicotiana tabacum HOM05D004141 ORTHO05D005416 1.3e-176 623.2 399 78.2
GSVIVG01014186001 Vitis vinifera HOM05D004141 ORTHO05D005416 1.3e-176 623.2 396 78.3
Lj3g0016162 Lotus japonicus HOM05D004141 ORTHO05D005416 2.9e-176 622.1 406 75.6
Lj6g0002556 Lotus japonicus HOM05D004141 ORTHO05D005416 2.9e-176 622.1 406 75.9
Thecc.07G117900 Theobroma cacao HOM05D004141 ORTHO05D005416 2.9e-176 622.1 402 76.4
Migut.H02002 Erythranthe guttata HOM05D004141 ORTHO05D005416 3.8e-176 621.7 407 75.9
Gohir.D01G042710 Gossypium hirsutum HOM05D004141 ORTHO05D005416 3.8e-176 621.7 407 75.9
Gorai.002G054000 Gossypium raimondii HOM05D004141 ORTHO05D005416 3.8e-176 621.7 407 75.9
Cfa017272 Carpinus fangiana HOM05D004141 ORTHO05D005416 6.5e-176 620.9 404 77.5
CiPaw.11G159700 Carya illinoinensis HOM05D004141 ORTHO05D005416 6.5e-176 620.9 411 76.4
FAN16G3678 Fragaria x ananassa HOM05D004141 ORTHO05D005416 8.5e-176 620.5 412 75.2
FAN11G2786 Fragaria x ananassa HOM05D004141 ORTHO05D005416 1.5e-175 619.8 422 73.7
arahy.Tifrunner.gnm1.ann1.K2RFPE Arachis hypogaea HOM05D004141 ORTHO05D005416 1.9e-175 619.4 387 75.7
arahy.Tifrunner.gnm1.ann1.2ZZ8MX Arachis hypogaea HOM05D004141 ORTHO05D005416 3.2e-175 618.6 387 75.7
arahy.Tifrunner.gnm1.ann1.9BEE5S Arachis hypogaea HOM05D004141 ORTHO05D005416 3.2e-175 618.6 387 76.0
Oeu061361.2 Olea europaea HOM05D004141 ORTHO05D005416 3.2e-175 618.6 410 75.1
TAR629G0569 Trochodendron aralioides HOM05D004141 ORTHO05D005416 9.4e-175 617.1 415 76.4
Prupe.5G052700 Prunus persica HOM05D004141 ORTHO05D005416 1.2e-174 616.7 408 75.2
SGA_v2.0_scaffold130G34289 Striga asiatica HOM05D004141 ORTHO05D005416 1.2e-174 616.7 408 75.7
Ca_10927_v3 Cicer arietinum L. HOM05D004141 ORTHO05D005416 1.6e-174 616.3 400 75.8
SalBow7G1122 Salvia bowleyana HOM05D004141 ORTHO05D005416 2.7e-174 615.5 407 75.4
Prupe.4G241400 Prunus persica HOM05D004141 ORTHO05D005416 4.7e-174 614.8 409 75.3
Aqoxy1G02012 Aquilegia oxysepala HOM05D004141 ORTHO05D005416 8.0e-174 614.0 411 76.2
Cc05_g11010 Coffea canephora HOM05D004141 ORTHO05D005416 1.0e-173 613.6 403 76.4
Duzib213G0227 Durio zibethinus HOM05D004141 ORTHO05D005416 1.0e-173 613.6 406 76.1
FAN21G2932 Fragaria x ananassa HOM05D004141 ORTHO05D005416 1.0e-173 613.6 423 73.0
MSTRG.11343 Avicennia marina HOM05D004141 ORTHO05D005416 1.4e-173 613.2 411 74.5
CANSAT78G1263 Cannabis sativa HOM05D004141 ORTHO05D005416 1.8e-173 612.8 408 75.7
BcaC08g47454 Brassica carinata HOM05D004141 ORTHO05D005416 2.3e-173 612.5 402 75.6
BolC6t40287H Brassica oleracea HOM05D004141 ORTHO05D005416 2.3e-173 612.5 402 75.6
CANSAT78G2476 Cannabis sativa HOM05D004141 ORTHO05D005416 2.3e-173 612.5 408 75.5
PSO170G2286 Papaver somniferum HOM05D004141 ORTHO05D005416 2.3e-173 612.5 405 77.0
PSO017G5924 Papaver somniferum HOM05D004141 ORTHO05D005416 3.0e-173 612.1 405 76.8
Potri.011G109000 Populus trichocarpa HOM05D004141 ORTHO05D005416 4.0e-173 611.7 394 77.2
C06p52680 Brassica napus HOM05D004141 ORTHO05D005416 5.2e-173 611.3 399 75.9
MELO3C016129.2 Cucumis melo HOM05D004141 ORTHO05D005416 8.8e-173 610.5 414 74.4
CsaV3_4G008070 Cucumis sativus L. HOM05D004141 ORTHO05D005416 8.8e-173 610.5 402 76.4
Psat6g208960 Pisum sativum HOM05D004141 ORTHO05D005416 1.5e-172 609.8 392 76.3
BraA07t31908Z Brassica rapa HOM05D004141 ORTHO05D005416 2.0e-172 609.4 400 75.5
Rhsim04G0026700 Rhododendron simsii HOM05D004141 ORTHO05D005416 3.4e-172 608.6 449 69.7
TWI31G0451 Tripterygium wilfordii HOM05D004141 ORTHO05D005416 3.4e-172 608.6 407 73.2
Glyma.12G230400 Glycine max HOM05D004141 ORTHO05D005416 4.4e-172 608.2 400 75.0
HanXRQChr15g0495231 Helianthus annuus HOM05D004141 ORTHO05D005416 4.4e-172 608.2 396 75.0
A07p44000 Brassica napus HOM05D004141 ORTHO05D005416 5.7e-172 607.8 396 76.3
DCAR_030174 Daucus carota HOM05D004141 ORTHO05D005416 9.8e-172 607.1 410 74.4
Cpa.g.sc77.17 Carica papaya HOM05D004141 ORTHO05D005416 1.3e-171 606.7 407 73.7
HanXRQChr04g0118321 Helianthus annuus HOM05D004141 ORTHO05D005416 1.3e-171 606.7 397 75.1
Medtr1g104880 Medicago truncatula HOM05D004141 ORTHO05D005416 1.7e-171 606.3 398 74.9
AT1G78800 Arabidopsis thaliana HOM05D004141 ORTHO05D005416 2.8e-171 605.5 401 75.3
Thhalv10007837m.g Eutrema salsugineum HOM05D004141 ORTHO05D005416 2.8e-171 605.5 387 77.8
Atru.chr2.2126 Acer truncatum HOM05D004141 ORTHO05D005416 3.7e-171 605.1 408 75.0
CsaV3_7G010060 Cucumis sativus L. HOM05D004141 ORTHO05D005416 6.3e-171 604.4 400 75.5
Lalb_Chr25g0285811 Lupinus albus HOM05D004141 ORTHO05D005416 6.3e-171 604.4 399 73.7
Nn7g36869 Nelumbo nucifera HOM05D004141 ORTHO05D005416 6.3e-171 604.4 405 75.6
VMungo1080G0359 Vigna mungo HOM05D004141 ORTHO05D005416 1.4e-170 603.2 400 74.2
Peaxi162Scf00390g00331 Petunia axillaris HOM05D004141 ORTHO05D005416 3.1e-170 602.1 390 77.2
Sabra11G0096600 Salix brachista HOM05D004141 ORTHO05D005416 3.1e-170 602.1 424 72.4
Rhsim02G0051200 Rhododendron simsii HOM05D004141 ORTHO05D005416 4.1e-170 601.7 460 67.8
AL2G39200 Arabidopsis lyrata HOM05D004141 ORTHO05D005416 7.0e-170 600.9 401 74.6
Carub.0002s2562 Capsella rubella HOM05D004141 ORTHO05D005416 9.1e-170 600.5 398 74.6
Sp5g33830 Schrenkiella parvula HOM05D004141 ORTHO05D005416 1.6e-169 599.7 401 74.1
Phvul.005G081600 Phaseolus vulgaris HOM05D004141 ORTHO05D005416 2.0e-169 599.4 400 74.0
ECA232G4285 Erigeron canadensis HOM05D004141 ORTHO05D005416 3.5e-169 598.6 398 75.1
Eucgr.F01245 Eucalyptus grandis HOM05D004141 ORTHO05D005416 3.5e-169 598.6 410 72.4
BcaB03g16036 Brassica carinata HOM05D004141 ORTHO05D005416 5.9e-169 597.8 390 76.4
Atru.chr3.1550 Acer truncatum HOM05D004141 ORTHO05D005416 7.7e-169 597.4 450 69.8
Ah.16g104680 Amaranthus hybridus HOM05D004141 ORTHO05D005416 7.7e-169 597.4 403 73.7
AUR62019583 Chenopodium quinoa HOM05D004141 ORTHO05D005416 1.3e-168 596.7 395 74.7
THA.LOC104812317 Tarenaya hassleriana HOM05D004141 ORTHO05D005416 2.3e-168 595.9 404 73.8
MBI14_g32936_MAGBIO Magnolia biondii HOM05D004141 ORTHO05D005416 5.0e-168 594.7 410 71.7
Glyma.13G269200 Glycine max HOM05D004141 ORTHO05D005416 6.6e-168 594.3 424 70.3
Lsat_1_v5_gn_7_102521 Lactuca sativa HOM05D004141 ORTHO05D005416 6.6e-168 594.3 392 75.8
Peaxi162Scf00111g01467 Petunia axillaris HOM05D004141 ORTHO05D005416 3.3e-167 592.0 403 74.7
PGR004G1319 Punica granatum HOM05D004141 ORTHO05D005416 3.3e-167 592.0 409 73.3
PGR117G0003 Punica granatum HOM05D004141 ORTHO05D005416 3.3e-167 592.0 409 73.3
Sc03g0010560 Simmondsia chinensis HOM05D004141 ORTHO05D005416 5.6e-167 591.3 403 73.4
Ciclev10020399m.g Citrus clementina HOM05D004141 ORTHO05D005416 9.5e-167 590.5 407 72.2
Aa31LG4G2230 Aethionema arabicum HOM05D004141 ORTHO05D005416 4.7e-166 588.2 419 71.1
ClCG07G010270 Citrullus lanatus HOM05D004141 ORTHO05D005416 8.0e-166 587.4 397 75.3
arahy.Tifrunner.gnm1.ann1.DJ268J Arachis hypogaea HOM05D004141 ORTHO05D005416 1.4e-165 586.6 434 66.8
Actinidia35211 Actinidia chinensis HOM05D004141 ORTHO05D005416 2.0e-164 582.8 371 78.7
FAN25G0103 Fragaria x ananassa HOM05D004141 ORTHO05D005416 4.9e-163 578.2 389 74.0
Hund09287 Selenicereus undatus HOM05D004141 ORTHO05D005416 4.1e-162 575.1 403 71.7
AUR62037553 Chenopodium quinoa HOM05D004141 ORTHO05D005416 1.0e-160 570.5 375 75.2
unitig_72.g29740 Utricularia gibba HOM05D004141 ORTHO05D005416 5.0e-160 568.2 430 67.9
EL10Ac4g08353 Beta vulgaris HOM05D004141 ORTHO05D005416 6.2e-158 561.2 490 60.6
Zm00001eb072460 Zea mays HOM05D004141 ORTHO05D005416 2.3e-157 559.3 404 69.3
Sed0017698 Sechium edule HOM05D004141 ORTHO05D005416 4.0e-157 558.5 436 67.2
Os04g0589600 Oryza sativa ssp. japonica HOM05D004141 ORTHO05D005416 4.4e-156 555.1 404 67.6
unitig_746.g26536 Utricularia gibba HOM05D004141 ORTHO05D005416 1.1e-154 550.4 391 70.8
ATR0807G029 Amborella trichopoda HOM05D004141 ORTHO05D005416 1.9e-154 549.7 410 67.8
CSS0043357 Camellia sinensis var. sinensis HOM05D004141 ORTHO05D005416 4.1e-154 548.5 399 71.2
HPP92_017867 Vanilla planifolia HOM05D004141 ORTHO05D005416 1.2e-153 547.0 388 70.1
ECA240G0250 Erigeron canadensis HOM05D004141 ORTHO05D005416 8.1e-150 534.3 355 73.8
CSS0028209 Camellia sinensis var. sinensis HOM05D004141 ORTHO05D005416 1.3e-147 526.9 383 71.0
SEGI_24046 Sequoiadendron giganteum HOM05D004141 ORTHO05D005416 2.1e-145 519.6 404 64.1
Manes.03G100400 Manihot esculenta HOM05D004141 ORTHO05D005416 1.7e-144 516.5 343 75.5
CDE06G2415 Ceratophyllum demersum HOM05D004141 ORTHO05D005416 3.0e-144 515.8 357 71.1
Sed0020321 Sechium edule HOM05D004141 ORTHO05D005416 5.6e-143 511.5 351 72.6
Duzib213G0637 Durio zibethinus HOM05D004141 ORTHO05D005416 2.8e-142 509.2 406 66.3
Pp3c12_4340 Physcomitrium patens HOM05D004141 ORTHO05D005416 4.0e-141 505.4 415 59.5
Oeu031026.1 Olea europaea HOM05D004141 ORTHO05D005416 1.7e-139 500.0 379 68.9
SMO200G0224 Selaginella moellendorffii HOM05D004141 ORTHO05D005416 2.1e-137 493.0 404 59.4
AagrBONN_evm.TU.Sc2ySwM_117.897 Anthoceros agrestis HOM05D004141 ORTHO05D005416 3.3e-135 485.7 412 58.7
Thhalv10019736m.g Eutrema salsugineum HOM05D004141 ORTHO05D005416 5.2e-133 478.4 388 63.1
Dinv18368 Davidia involucrata HOM05D004141 ORTHO05D005416 3.5e-129 465.7 410 62.0
Mapoly0001s0113 Marchantia polymorpha HOM05D004141 ORTHO05D005416 5.6e-127 458.4 395 57.7
Gohir.A01G053700 Gossypium hirsutum HOM05D004141 ORTHO05D005416 1.4e-122 443.7 311 71.7
SHI08479 Sapria himalayana HOM05D004141 ORTHO05D000023 1.3e-112 410.6 358 60.3
Potri.001G393000 Populus trichocarpa HOM05D004141 ORTHO05D005416 4.0e-109 399.1 374 59.9
TPR.G5502 Trifolium pratense HOM05D004141 ORTHO05D005416 1.8e-104 383.6 235 79.1
PRCOL_00006028 Prasinoderma coloniale HOM05D004141 ORTHO05D005416 6.7e-104 381.7 407 49.6
MCO01G083 Micromonas commoda HOM05D004141 ORTHO05D005416 7.6e-100 368.2 412 50.0
CAN.G874.81 Capsicum annuum HOM05D004141 ORTHO05D005416 1.0e-99 367.9 201 87.1
Haze_26741 Corylus avellana HOM05D004141 ORTHO05D005416 9.7e-95 351.3 406 48.0
Cre02.g095147 Chlamydomonas reinhardtii HOM05D004141 ORTHO05D005416 8.2e-94 348.2 451 43.7
CARHR072350 Cardamine hirsuta HOM05D004141 ORTHO05D005416 1.4e-93 347.4 203 82.3
C03p92790 Brassica napus HOM05D004141 ORTHO05D005416 2.5e-90 336.7 198 82.3
vmacro11945 Vaccinium macrocarpon HOM05D004141 ORTHO05D005416 3.1e-85 319.7 248 66.5
Haze_09318 Corylus avellana HOM05D004141 ORTHO05D005416 5.3e-85 318.9 273 62.3
DCAR_013161 Daucus carota HOM05D004141 ORTHO05D005416 1.5e-84 317.4 257 66.9
Rhsim12G0175600 Rhododendron simsii HOM05D004141 ORTHO05D005416 1.4e-82 310.8 389 48.1
CBR_g988 Chara braunii HOM05D004141 ORTHO05D005416 3.7e-70 269.6 452 37.8
Cfa025499 Carpinus fangiana HOM05D004141 ORTHO05D005416 2.5e-66 256.9 418 39.2
CAN.G4738.1 Capsicum annuum HOM05D004141 ORTHO05D005416 1.2e-63 248.1 157 76.4
Nitab4.5_0002851g0030 Nicotiana tabacum HOM05D004141 ORTHO05D005416 5.7e-63 245.7 346 43.4
MD00G1077900 Malus domestica HOM05D004141 ORTHO05D005416 3.8e-59 233.0 183 68.3
Lalb_Chr01g0016531 Lupinus albus HOM05D004141 ORTHO05D005416 1.5e-58 231.1 145 73.1
Rhsim08G0243200 Rhododendron simsii HOM05D004141 ORTHO05D005416 2.5e-58 230.3 407 40.5
BcaC01g01525 Brassica carinata HOM05D004141 ORTHO05D005416 5.5e-58 229.2 173 68.2
MD03G1178900 Malus domestica HOM05D004141 ORTHO05D005416 2.8e-54 216.9 221 56.6
Ciclev10022599m.g Citrus clementina HOM05D004141 ORTHO05D005416 3.8e-51 206.5 175 64.6
Rhsim06G0208700 Rhododendron simsii HOM05D004141 ORTHO05D005416 1.1e-50 204.9 332 42.2
Ciclev10022380m.g Citrus clementina HOM05D004141 ORTHO05D005416 2.1e-49 200.7 233 49.4
Rhsim02G0229600 Rhododendron simsii HOM05D004141 ORTHO05D005416 6.8e-48 195.7 117 79.5
Lalb_Chr01g0016541 Lupinus albus HOM05D004141 ORTHO05D048486 1.5e-39 167.9 111 73.9
SHI22488 Sapria himalayana HOM05D004141 ORTHO05D005416 1.1e-32 145.2 256 36.3
BcaB05g25154 Brassica carinata HOM05D004141 ORTHO05D005416 3.7e-30 136.7 137 52.6
C02p35890 Brassica napus HOM05D004141 ORTHO05D005416 1.7e-27 127.9 289 32.2
Rhsim02G0051400 Rhododendron simsii HOM05D004141 ORTHO05D000437 6.6e-27 125.9 83 73.5
BraA02t07239Z Brassica rapa HOM05D004141 ORTHO05D026982 1.5e-26 124.8 78 75.6
A02p22350 Brassica napus HOM05D004141 ORTHO05D026982 4.3e-26 123.2 78 75.6
Nitab4.5_0010088g0010 Nicotiana tabacum HOM05D004141 ORTHO05D005416 2.6e-23 114.0 67 82.1
MD00G1077500 Malus domestica HOM05D004141 ORTHO05D005416 9.9e-23 112.1 66 75.8
EL10Ac3g06735 Beta vulgaris HOM05D004141 ORTHO05D026982 1.1e-21 108.6 57 86.0
EL10Ac3g06738 Beta vulgaris HOM05D004141 ORTHO05D026982 4.1e-21 106.7 55 87.3
BcaC01g01527 Brassica carinata HOM05D004141 ORTHO05D009181 1.4e-13 81.6 66 66.7
MD00G1078000 Malus domestica HOM05D004141 ORTHO05D005416 1.3e-11 75.1 43 72.1
BcaC01g01526 Brassica carinata HOM05D004141 ORTHO05D005416 1.7e-11 74.7 43 79.1
Haze_26859 Corylus avellana HOM05D004762 ORTHO05D005972 6.6e-11 72.8 236 27.5
BcaC03g15838 Brassica carinata HOM05D004141 ORTHO05D005416 1.1e-10 72.0 234 26.9
Oeu008350.1 Olea europaea HOM05D000783 ORTHO05D000705 2.4e-08 64.3 189 27.5
Pp3c14_26870 Physcomitrium patens HOM05D004762 ORTHO05D005972 5.3e-08 63.2 154 31.2
Oeu048326.1 Olea europaea HOM05D000783 ORTHO05D000705 2.0e-07 61.2 189 25.9
Prupe.4G169100 Prunus persica HOM05D004141 ORTHO05D005416 2.0e-07 61.2 55 61.8
MD05G1191300 Malus domestica HOM05D002084 ORTHO05D002031 5.8e-07 59.7 53 56.6
PRCOL_00001337 Prasinoderma coloniale HOM05D003378 ORTHO05D003942 9.9e-07 58.9 114 33.3
CAN.G472.28 Capsicum annuum HOM05D000783 ORTHO05D000705 2.2e-06 57.8 192 25.0
Peaxi162Scf00713g00213 Petunia axillaris HOM05D000783 ORTHO05D000705 4.9e-06 56.6 153 26.8
SGA_v2.0_scaffold1G00349 Striga asiatica HOM05D000783 ORTHO05D000705 8.4e-06 55.8 189 25.4


User provided reference genes

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