Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1C578T12 Lonicera japonica HOM05D001950 ORTHO05D048434 1.6e-169 599.4 303 100.0
Lj3P718T48 Lonicera japonica HOM05D063616 ORTHO05D000022 1.2e-31 141.4 167 53.9
Lj3A557T53 Lonicera japonica HOM05D000041 ORTHO05D001926 2.6e-31 140.2 98 73.5
Lj3A569T41 Lonicera japonica HOM05D000041 ORTHO05D000452 2.6e-31 140.2 98 73.5
Lj3A746T65 Lonicera japonica HOM05D000041 ORTHO05D000452 3.2e-29 133.3 105 68.6
Gohir.A05G373100 Gossypium hirsutum HOM05D001950 ORTHO05D001926 7.9e-28 128.6 98 63.3
Gohir.D04G042400 Gossypium hirsutum HOM05D001950 ORTHO05D001926 1.0e-27 128.3 98 62.2
Hma1.2p1_1035F.1_g250460 Hydrangea macrophylla HOM05D001950 ORTHO05D001926 1.3e-27 127.9 103 60.2
Thecc.01G144300 Theobroma cacao HOM05D001950 ORTHO05D001926 2.3e-27 127.1 98 64.3
Duzib147G0542 Durio zibethinus HOM05D001950 ORTHO05D001926 8.7e-27 125.2 98 63.3
Solyc02g063050.3 Solanum lycopersicum HOM05D001950 ORTHO05D001926 2.5e-26 123.6 103 60.2
COL.COLO4_12142 Corchorus olitorius HOM05D001950 ORTHO05D001926 3.3e-26 123.2 98 62.2
Gohir.A11G058200 Gossypium hirsutum HOM05D001950 ORTHO05D001926 3.3e-26 123.2 101 62.4
Sopen02g014110 Solanum pennellii HOM05D001950 ORTHO05D001926 5.7e-26 122.5 103 60.2
CiPaw.15G186400 Carya illinoinensis HOM05D001950 ORTHO05D001926 7.4e-26 122.1 103 56.3
Gorai.012G047900 Gossypium raimondii HOM05D001950 ORTHO05D001926 7.4e-26 122.1 101 61.4
PGR119G1463 Punica granatum HOM05D001950 ORTHO05D001926 1.3e-25 121.3 103 60.2
Actinidia20628 Actinidia chinensis HOM05D001950 ORTHO05D001926 1.6e-25 120.9 102 60.8
Ciclev10026771m.g Citrus clementina HOM05D001950 ORTHO05D001926 1.6e-25 120.9 103 55.3
QL10p035251 Quercus lobata HOM05D001950 ORTHO05D001926 2.4e-24 117.1 98 60.2
QL10p037046 Quercus lobata HOM05D001950 ORTHO05D001926 2.4e-24 117.1 98 60.2
MELO3C023214.2 Cucumis melo HOM05D001950 ORTHO05D001926 9.0e-24 115.2 102 54.9
Sed0018397 Sechium edule HOM05D001950 ORTHO05D001926 9.0e-24 115.2 102 57.8
Manes.01G184200 Manihot esculenta HOM05D001950 ORTHO05D001926 2.0e-23 114.0 101 53.5
Medtr1g077190 Medicago truncatula HOM05D001950 ORTHO05D001926 2.0e-23 114.0 103 54.4
Atru.chr4.16 Acer truncatum HOM05D001950 ORTHO05D001926 2.6e-23 113.6 97 58.8
Manes.02G143700 Manihot esculenta HOM05D001950 ORTHO05D001926 2.6e-23 113.6 101 53.5
Prupe.4G288600 Prunus persica HOM05D001950 ORTHO05D001926 2.6e-23 113.6 102 54.9
GSVIVG01000268001 Vitis vinifera HOM05D001950 ORTHO05D001926 3.4e-23 113.2 102 55.9
Cc00_g01310 Coffea canephora HOM05D001950 ORTHO05D001926 4.5e-23 112.8 103 59.2
CsaV3_2G019590 Cucumis sativus L. HOM05D001950 ORTHO05D001926 4.5e-23 112.8 102 53.9
Psat6g111560 Pisum sativum HOM05D001950 ORTHO05D001926 5.9e-23 112.5 103 51.5
Oeu017635.1 Olea europaea HOM05D001950 ORTHO05D001926 1.3e-22 111.3 103 55.3
Gorai.007G067300 Gossypium raimondii HOM05D001950 ORTHO05D001926 1.7e-22 110.9 87 60.9
Dinv03274 Davidia involucrata HOM05D001950 ORTHO05D001926 2.2e-22 110.5 103 57.3
Dinv26645 Davidia involucrata HOM05D001950 ORTHO05D001926 2.9e-22 110.2 103 56.3
Lalb_Chr21g0311741 Lupinus albus HOM05D001950 ORTHO05D001926 3.8e-22 109.8 103 51.5
Lalb_Chr02g0149731 Lupinus albus HOM05D001950 ORTHO05D001926 6.5e-22 109.0 103 52.4
TPR.G16637 Trifolium pratense HOM05D001950 ORTHO05D001926 6.5e-22 109.0 103 53.4
Lj5g0015643 Lotus japonicus HOM05D001950 ORTHO05D001926 1.1e-21 108.2 103 54.4
RcHm_v2.0_Chr3g0485101 Rosa chinensis HOM05D001950 ORTHO05D001926 1.1e-21 108.2 98 53.1
Sed0018159 Sechium edule HOM05D001950 ORTHO05D001926 1.1e-21 108.2 97 55.7
THA.LOC104818394 Tarenaya hassleriana HOM05D001950 ORTHO05D001926 1.1e-21 108.2 98 56.1
Phvul.L001768 Phaseolus vulgaris HOM05D001950 ORTHO05D001926 1.9e-21 107.5 99 54.5
ECA234G2980 Erigeron canadensis HOM05D001950 ORTHO05D001926 2.5e-21 107.1 95 57.9
Lj3P749T41 Lonicera japonica HOM05D063616 ORTHO05D048434 3.2e-21 106.7 54 94.4
Migut.M00002 Erythranthe guttata HOM05D001950 ORTHO05D001926 4.2e-21 106.3 101 53.5
PSO017G5002 Papaver somniferum HOM05D001950 ORTHO05D001926 1.2e-20 104.8 98 55.1
PSO478G4401 Papaver somniferum HOM05D001950 ORTHO05D001926 1.2e-20 104.8 98 55.1
unitig_746.g26624 Utricularia gibba HOM05D001950 ORTHO05D001926 1.2e-20 104.8 97 54.6
FvH4_1g25960 Fragaria vesca HOM05D001950 ORTHO05D001926 1.0e-19 101.7 98 48.0
FAN26G2371 Fragaria x ananassa HOM05D001950 ORTHO05D001926 1.0e-19 101.7 98 48.0
CANSAT01G2489 Cannabis sativa HOM05D001950 ORTHO05D001926 1.4e-19 101.3 100 54.0
Glyma.10G175300 Glycine max HOM05D001950 ORTHO05D001926 1.8e-19 100.9 103 49.5
Thhalv10012799m.g Eutrema salsugineum HOM05D001950 ORTHO05D001926 8.8e-19 98.6 102 51.0
VMungo0720G2092 Vigna mungo HOM05D001950 ORTHO05D001926 1.5e-18 97.8 87 55.2
Sp2g23690 Schrenkiella parvula HOM05D001950 ORTHO05D001926 1.9e-18 97.4 97 55.7
Eucgr.I00037 Eucalyptus grandis HOM05D001950 ORTHO05D001926 2.5e-18 97.1 102 48.0
A10p28320 Brassica napus HOM05D001950 ORTHO05D001926 4.3e-18 96.3 96 53.1
FAN28G2362 Fragaria x ananassa HOM05D001950 ORTHO05D001926 5.7e-18 95.9 98 46.9
BraA09t36339Z Brassica rapa HOM05D001950 ORTHO05D001926 7.4e-18 95.5 98 54.1
Sc09g0002010 Simmondsia chinensis HOM05D001950 ORTHO05D001926 7.4e-18 95.5 92 55.4
A09p06920 Brassica napus HOM05D001950 ORTHO05D001926 9.7e-18 95.1 98 54.1
Thhalv10003713m.g Eutrema salsugineum HOM05D001950 ORTHO05D001926 9.7e-18 95.1 97 54.6
Glyma.20G215200 Glycine max HOM05D001950 ORTHO05D001926 9.7e-18 95.1 103 49.5
BcaB08g37261 Brassica carinata HOM05D001950 ORTHO05D001926 1.3e-17 94.7 96 51.0
Peaxi162Scf00742g00028 Petunia axillaris HOM05D001950 ORTHO05D001926 1.3e-17 94.7 103 50.5
BraA10t44879Z Brassica rapa HOM05D001950 ORTHO05D001926 1.7e-17 94.4 96 52.1
Aa31LG11G2900 Aethionema arabicum HOM05D001950 ORTHO05D001926 3.7e-17 93.2 98 49.0
Carub.0006s0736 Capsella rubella HOM05D001950 ORTHO05D001926 3.7e-17 93.2 102 48.0
BolC9t59600H Brassica oleracea HOM05D001950 ORTHO05D001926 4.8e-17 92.8 96 51.0
HanXRQChr12g0357861 Helianthus annuus HOM05D001950 ORTHO05D001926 4.8e-17 92.8 95 50.5
vmacro08685 Vaccinium macrocarpon HOM05D001950 ORTHO05D001926 4.8e-17 92.8 89 52.8
HanXRQChr10g0307771 Helianthus annuus HOM05D001950 ORTHO05D001926 6.3e-17 92.4 100 50.0
AL6G34770 Arabidopsis lyrata HOM05D001950 ORTHO05D001926 8.2e-17 92.0 97 54.6
AT5G08440 Arabidopsis thaliana HOM05D001950 ORTHO05D001926 8.2e-17 92.0 104 47.1
MSTRG.14938 Avicennia marina HOM05D001950 ORTHO05D001926 8.2e-17 92.0 96 51.0
C09p68580 Brassica napus HOM05D001950 ORTHO05D001926 1.1e-16 91.7 96 51.0
AUR62031846 Chenopodium quinoa HOM05D001950 ORTHO05D001926 1.1e-16 91.7 88 52.3
Aqoxy1G01787 Aquilegia oxysepala HOM05D001950 ORTHO05D001926 1.4e-16 91.3 103 47.6
Aa31LG3G18100 Aethionema arabicum HOM05D001950 ORTHO05D001926 1.8e-16 90.9 100 50.0
BcaC04g23499 Brassica carinata HOM05D001950 ORTHO05D001926 1.8e-16 90.9 101 51.5
BolC9t53683H Brassica oleracea HOM05D001950 ORTHO05D001926 1.8e-16 90.9 101 51.5
FAN25G2884 Fragaria x ananassa HOM05D001950 ORTHO05D001926 1.8e-16 90.9 103 48.5
RcHm_v2.0_Chr5g0036791 Rosa chinensis HOM05D001950 ORTHO05D001926 1.8e-16 90.9 106 50.9
Ah.08g213910 Amaranthus hybridus HOM05D001950 ORTHO05D001926 2.4e-16 90.5 87 50.6
HanXRQChr10g0307791 Helianthus annuus HOM05D001950 ORTHO05D001926 2.4e-16 90.5 99 51.5
BcaNung03736 Brassica carinata HOM05D001950 ORTHO05D001926 3.1e-16 90.1 98 51.0
BcaNung03857 Brassica carinata HOM05D001950 ORTHO05D001926 3.1e-16 90.1 99 52.5
BolC7t44932H Brassica oleracea HOM05D001950 ORTHO05D001926 3.1e-16 90.1 98 51.0
BcaB04g19865 Brassica carinata HOM05D001950 ORTHO05D001926 4.1e-16 89.7 98 52.0
Potri.004G133700 Populus trichocarpa HOM05D001950 ORTHO05D001926 4.1e-16 89.7 97 51.5
AL6G18910 Arabidopsis lyrata HOM05D001950 ORTHO05D001926 5.3e-16 89.4 102 47.1
AT5G23490 Arabidopsis thaliana HOM05D001950 ORTHO05D001926 5.3e-16 89.4 97 53.6
CARHR204570 Cardamine hirsuta HOM05D001950 ORTHO05D001926 6.9e-16 89.0 96 50.0
Zm00001eb267700 Zea mays HOM05D001950 ORTHO05D001926 6.9e-16 89.0 103 42.7
Aqoxy3G01024 Aquilegia oxysepala HOM05D001950 ORTHO05D001926 9.1e-16 88.6 103 46.6
BraA06t26375Z Brassica rapa HOM05D001950 ORTHO05D001926 9.1e-16 88.6 98 51.0
CARHR190030 Cardamine hirsuta HOM05D001950 ORTHO05D001926 9.1e-16 88.6 98 49.0
Os05g0100900 Oryza sativa ssp. japonica HOM05D001950 ORTHO05D001926 9.1e-16 88.6 103 41.7
FAN21G3735 Fragaria x ananassa HOM05D001950 ORTHO05D001926 1.5e-15 87.8 103 46.6
Lsat_1_v5_gn_3_105740 Lactuca sativa HOM05D001950 ORTHO05D001926 2.6e-15 87.0 96 51.0
Nn4g22788 Nelumbo nucifera HOM05D001950 ORTHO05D001926 2.6e-15 87.0 103 45.6
FvH4_3g21410 Fragaria vesca HOM05D001950 ORTHO05D001926 3.4e-15 86.7 103 47.6
FAN11G2762 Fragaria x ananassa HOM05D001950 ORTHO05D001926 3.4e-15 86.7 103 47.6
Sp6g34480 Schrenkiella parvula HOM05D001950 ORTHO05D001926 3.4e-15 86.7 100 48.0
HanXRQChr03g0062981 Helianthus annuus HOM05D001950 ORTHO05D001926 7.7e-15 85.5 98 50.0
DCAR_009627 Daucus carota HOM05D001950 ORTHO05D001926 1.0e-14 85.1 91 48.4
Actinidia04073 Actinidia chinensis HOM05D001950 ORTHO05D001926 2.2e-14 84.0 91 49.5
Duzib264G1221 Durio zibethinus HOM05D001950 ORTHO05D001926 2.2e-14 84.0 72 58.3
Lsat_1_v5_gn_9_123621 Lactuca sativa HOM05D001950 ORTHO05D001926 2.2e-14 84.0 96 50.0
Lj3A749T130 Lonicera japonica HOM05D000041 ORTHO05D000452 2.2e-14 84.0 45 93.3
Prupe.4G196300 Prunus persica HOM05D001950 ORTHO05D001926 3.8e-14 83.2 104 45.2
ECA248G3652 Erigeron canadensis HOM05D001950 ORTHO05D001926 5.0e-14 82.8 98 46.9
Carub.0006s2127 Capsella rubella HOM05D001950 ORTHO05D001926 6.5e-14 82.4 97 48.5
MD11G1230900 Malus domestica HOM05D001950 ORTHO05D001926 8.5e-14 82.0 106 47.2
Hund07198 Selenicereus undatus HOM05D001950 ORTHO05D001926 8.5e-14 82.0 92 47.8
Nn3g16882 Nelumbo nucifera HOM05D001950 ORTHO05D001926 1.4e-13 81.3 95 43.2
Hund21775 Selenicereus undatus HOM05D001950 ORTHO05D001926 1.4e-13 81.3 105 45.7
Lsat_1_v5_gn_5_88520 Lactuca sativa HOM05D001950 ORTHO05D001926 3.2e-13 80.1 94 44.7
Lj3A718T86 Lonicera japonica HOM05D000041 ORTHO05D000452 3.2e-13 80.1 44 90.9
MD03G1185400 Malus domestica HOM05D001950 ORTHO05D001926 3.2e-13 80.1 108 49.1
Ca_09931_v3 Cicer arietinum L. HOM05D001950 ORTHO05D001926 7.2e-13 79.0 71 53.5
Os01g0108000 Oryza sativa ssp. japonica HOM05D001950 ORTHO05D001926 1.6e-12 77.8 102 39.2
HPP92_003079 Vanilla planifolia HOM05D001950 ORTHO05D001926 1.6e-12 77.8 101 44.6
Nitab4.5_0003825g0030 Nicotiana tabacum HOM05D001950 ORTHO05D001926 2.1e-12 77.4 65 55.4
EL10Ac7g17771 Beta vulgaris HOM05D001950 ORTHO05D001926 2.7e-12 77.0 74 51.4
AL6G19090 Arabidopsis lyrata HOM05D001950 ORTHO05D001926 4.7e-12 76.3 89 46.1
Sabra04G0084400 Salix brachista HOM05D001950 ORTHO05D004648 7.9e-12 75.5 87 48.3
CDE06G1086 Ceratophyllum demersum HOM05D001950 ORTHO05D001926 1.8e-11 74.3 98 43.9
HanXRQChr10g0278891 Helianthus annuus HOM05D001950 ORTHO05D001926 2.3e-11 73.9 99 46.5
AL6G34780 Arabidopsis lyrata HOM05D001950 ORTHO05D001926 6.7e-11 72.4 107 46.7
Zm00001eb126630 Zea mays HOM05D001950 ORTHO05D001926 6.7e-11 72.4 101 39.6
SalBow5G4392 Salvia bowleyana HOM05D001950 ORTHO05D001926 1.1e-10 71.6 65 56.9
AT5G23510 Arabidopsis thaliana HOM05D001950 ORTHO05D001926 3.3e-10 70.1 99 47.5
Carub.0006s2128 Capsella rubella HOM05D001950 ORTHO05D001926 3.3e-10 70.1 83 49.4
AUR62008865 Chenopodium quinoa HOM05D001950 ORTHO05D001926 4.4e-10 69.7 63 54.0
Lj3A747T65 Lonicera japonica HOM05D001950 ORTHO05D001926 9.7e-10 68.6 57 61.4
SGA_v2.0_scaffold24G10258 Striga asiatica HOM05D001950 ORTHO05D001926 2.2e-09 67.4 132 34.1
ATR0730G044 Amborella trichopoda HOM05D001950 ORTHO05D001926 2.8e-09 67.0 103 38.8
Cfa020944 Carpinus fangiana HOM05D001950 ORTHO05D004648 2.8e-09 67.0 88 43.2
TAR622G1364 Trochodendron aralioides HOM05D001950 ORTHO05D001926 4.8e-09 66.2 71 47.9
FAN03G2988 Fragaria x ananassa HOM05D001950 ORTHO05D001926 6.3e-09 65.9 106 39.6
FAN10G1481 Fragaria x ananassa HOM05D001950 ORTHO05D001926 8.2e-09 65.5 102 40.2
ECA238G3875 Erigeron canadensis HOM05D000041 ORTHO05D000452 7.0e-08 62.4 98 38.8
Lj4A823T23 Lonicera japonica HOM05D001950 ORTHO05D001926 9.1e-08 62.0 43 69.8
CDE02G4419 Ceratophyllum demersum HOM05D001950 ORTHO05D001926 2.6e-07 60.5 82 40.2
CDE02G0761 Ceratophyllum demersum HOM05D001950 ORTHO05D001926 4.5e-07 59.7 85 40.0
Migut.B01449 Erythranthe guttata HOM05D001950 ORTHO05D001926 7.7e-07 58.9 93 34.4
DCAR_019940 Daucus carota HOM05D001950 ORTHO05D001926 1.3e-06 58.2 60 53.3
TWI31G1159 Tripterygium wilfordii HOM05D001950 ORTHO05D001926 1.3e-06 58.2 52 57.7
TPR.G9768 Trifolium pratense HOM05D001950 ORTHO05D001926 2.2e-06 57.4 93 37.6
Lalb_Chr07g0194621 Lupinus albus HOM05D001950 ORTHO05D001926 3.8e-06 56.6 93 33.3
Medtr8g010360 Medicago truncatula HOM05D001950 ORTHO05D001926 3.8e-06 56.6 99 36.4
C09p07650 Brassica napus HOM05D001950 ORTHO05D001926 6.5e-06 55.8 66 47.0
Glyma.03G094300 Glycine max HOM05D001950 ORTHO05D001926 6.5e-06 55.8 93 35.5
Lj3g0025534 Lotus japonicus HOM05D001950 ORTHO05D001926 6.5e-06 55.8 93 35.5
SGA_v2.0_scaffold98G29406 Striga asiatica HOM05D001950 ORTHO05D001926 6.5e-06 55.8 93 34.4


User provided reference genes

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