Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1C553T1 Lonicera japonica HOM05D004453 ORTHO05D005375 5.8e-53 210.7 112 100.0
CSS0040072 Camellia sinensis var. sinensis HOM05D004453 ORTHO05D005375 4.5e-37 157.9 97 87.6
Lsat_1_v5_gn_2_50660 Lactuca sativa HOM05D004453 ORTHO05D005375 4.5e-37 157.9 99 81.8
Cc01_g00270 Coffea canephora HOM05D004453 ORTHO05D005375 1.7e-36 156.0 100 83.0
Dinv03791 Davidia involucrata HOM05D004453 ORTHO05D005375 5.0e-36 154.5 97 83.5
MD03G1001500 Malus domestica HOM05D004453 ORTHO05D005375 4.2e-35 151.4 97 78.4
MD11G1001200 Malus domestica HOM05D004453 ORTHO05D005375 4.2e-35 151.4 97 79.4
TAR623G1190 Trochodendron aralioides HOM05D004453 ORTHO05D005375 4.2e-35 151.4 96 82.3
CiPaw.13G179200 Carya illinoinensis HOM05D004453 ORTHO05D005375 5.5e-35 151.0 98 80.6
Dinv13490 Davidia involucrata HOM05D004453 ORTHO05D005375 5.5e-35 151.0 97 81.4
Prupe.6G001400 Prunus persica HOM05D004453 ORTHO05D005375 9.4e-35 150.2 96 78.1
Rhsim01G0183700 Rhododendron simsii HOM05D004453 ORTHO05D005375 9.4e-35 150.2 97 82.5
Lalb_Chr16g0385441 Lupinus albus HOM05D004453 ORTHO05D005375 2.1e-34 149.1 100 80.0
QL01p007925 Quercus lobata HOM05D004453 ORTHO05D005375 2.7e-34 148.7 98 79.6
HanXRQChr14g0437111 Helianthus annuus HOM05D004453 ORTHO05D005375 3.6e-34 148.3 99 77.8
Sc13g0003960 Simmondsia chinensis HOM05D004453 ORTHO05D005375 4.7e-34 147.9 97 78.4
PSO339G2035 Papaver somniferum HOM05D004453 ORTHO05D005375 7.9e-34 147.1 98 76.5
BraA08t32115Z Brassica rapa HOM05D004453 ORTHO05D005375 1.0e-33 146.7 99 78.8
BcaC01g01533 Brassica carinata HOM05D004453 ORTHO05D005375 2.3e-33 145.6 99 77.8
C03p92850 Brassica napus HOM05D004453 ORTHO05D005375 2.3e-33 145.6 99 77.8
BolC3t21591H Brassica oleracea HOM05D004453 ORTHO05D005375 2.3e-33 145.6 99 77.8
Carub.0001s4404 Capsella rubella HOM05D004453 ORTHO05D005375 2.3e-33 145.6 101 77.2
vmacro12597 Vaccinium macrocarpon HOM05D004453 ORTHO05D005375 2.3e-33 145.6 97 80.4
Thhalv10011735m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 3.0e-33 145.2 101 76.2
Manes.16G034900 Manihot esculenta HOM05D004453 ORTHO05D005375 3.0e-33 145.2 99 75.8
PSO384G0395 Papaver somniferum HOM05D004453 ORTHO05D005375 3.0e-33 145.2 98 75.5
A08p00560 Brassica napus HOM05D004453 ORTHO05D005375 3.9e-33 144.8 99 77.8
FAN16G2113 Fragaria x ananassa HOM05D004453 ORTHO05D005375 3.9e-33 144.8 99 74.7
FAN25G0403 Fragaria x ananassa HOM05D004453 ORTHO05D005375 3.9e-33 144.8 99 74.7
FvH4_3g45940 Fragaria vesca HOM05D004453 ORTHO05D005375 5.1e-33 144.4 99 74.7
FAN11G3564 Fragaria x ananassa HOM05D004453 ORTHO05D005375 5.1e-33 144.4 99 74.7
FAN21G0323 Fragaria x ananassa HOM05D004453 ORTHO05D005375 5.1e-33 144.4 99 74.7
RcHm_v2.0_Chr5g0084051 Rosa chinensis HOM05D004453 ORTHO05D005375 5.1e-33 144.4 99 74.7
TAR369G0719 Trochodendron aralioides HOM05D004453 ORTHO05D005375 5.1e-33 144.4 96 78.1
AL1G63560 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 6.7e-33 144.1 101 76.2
Lj4g0023466 Lotus japonicus HOM05D004453 ORTHO05D005375 6.7e-33 144.1 102 76.5
Manes.17G052200 Manihot esculenta HOM05D004453 ORTHO05D005375 6.7e-33 144.1 97 77.3
Peaxi162Scf00186g01212 Petunia axillaris HOM05D004453 ORTHO05D005375 6.7e-33 144.1 99 76.8
Thecc.09G205600 Theobroma cacao HOM05D004453 ORTHO05D005375 6.7e-33 144.1 99 78.8
TWI34G0101 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 6.7e-33 144.1 97 76.3
Actinidia16228 Actinidia chinensis HOM05D004453 ORTHO05D005375 8.8e-33 143.7 96 78.1
arahy.Tifrunner.gnm1.ann1.C35Y2E Arachis hypogaea HOM05D004453 ORTHO05D005375 8.8e-33 143.7 94 77.7
arahy.Tifrunner.gnm1.ann1.GHD6QC Arachis hypogaea HOM05D004453 ORTHO05D005375 8.8e-33 143.7 94 77.7
Duzib150G1073 Durio zibethinus HOM05D004453 ORTHO05D005375 8.8e-33 143.7 99 79.8
AT1G55535 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 1.1e-32 143.3 101 76.2
Cpa.g.sc119.21 Carica papaya HOM05D004453 ORTHO05D005375 1.1e-32 143.3 99 75.8
DCAR_023824 Daucus carota HOM05D004453 ORTHO05D005375 1.1e-32 143.3 98 78.6
Atru.chr4.902 Acer truncatum HOM05D004453 ORTHO05D005375 1.5e-32 142.9 101 75.2
Nn7g35809 Nelumbo nucifera HOM05D004453 ORTHO05D005375 1.5e-32 142.9 97 77.3
Solyc01g050070.4 Solanum lycopersicum HOM05D004453 ORTHO05D005375 1.5e-32 142.9 97 77.3
BcaC08g44204 Brassica carinata HOM05D004453 ORTHO05D005375 2.0e-32 142.5 101 76.2
C06p16140 Brassica napus HOM05D004453 ORTHO05D005375 2.0e-32 142.5 101 76.2
BolC6t36812H Brassica oleracea HOM05D004453 ORTHO05D005375 2.0e-32 142.5 101 76.2
AUR62040892 Chenopodium quinoa HOM05D001653 ORTHO05D001751 2.0e-32 142.5 98 72.4
AUR62042621 Chenopodium quinoa HOM05D004453 ORTHO05D005375 2.0e-32 142.5 98 72.4
Eucgr.B03584 Eucalyptus grandis HOM05D004453 ORTHO05D005375 2.0e-32 142.5 98 76.5
Nn2g15897 Nelumbo nucifera HOM05D004453 ORTHO05D005375 2.0e-32 142.5 94 78.7
THA.LOC104815673 Tarenaya hassleriana HOM05D004453 ORTHO05D005375 2.0e-32 142.5 97 78.4
GSVIVG01025506001 Vitis vinifera HOM05D004453 ORTHO05D005375 2.0e-32 142.5 97 76.3
ClCG02G024480 Citrullus lanatus HOM05D004453 ORTHO05D005375 2.6e-32 142.1 97 75.3
ECA238G2653 Erigeron canadensis HOM05D004453 ORTHO05D005375 2.6e-32 142.1 97 77.3
Medtr4g083300 Medicago truncatula HOM05D004453 ORTHO05D005375 2.6e-32 142.1 103 74.8
Sp1g41150 Schrenkiella parvula HOM05D004453 ORTHO05D005375 2.6e-32 142.1 101 76.2
ATR0068G064 Amborella trichopoda HOM05D004453 ORTHO05D005375 3.3e-32 141.7 99 77.8
Ca_18793_v3 Cicer arietinum L. HOM05D004453 ORTHO05D005375 3.3e-32 141.7 101 76.2
Ciclev10016282m.g Citrus clementina HOM05D004453 ORTHO05D005375 3.3e-32 141.7 103 75.7
Sopen01g019490 Solanum pennellii HOM05D004453 ORTHO05D005375 3.3e-32 141.7 97 76.3
PSO541G5087 Papaver somniferum HOM05D004453 ORTHO05D005375 4.4e-32 141.4 100 74.0
PSO675G3694 Papaver somniferum HOM05D004453 ORTHO05D005375 4.4e-32 141.4 100 74.0
TWI60G0130 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 4.4e-32 141.4 97 75.3
CsaV3_4G017680 Cucumis sativus L. HOM05D004453 ORTHO05D005375 5.7e-32 141.0 96 75.0
ECA248G0105 Erigeron canadensis HOM05D004453 ORTHO05D005375 7.4e-32 140.6 89 83.1
Cfa009532 Carpinus fangiana HOM05D004453 ORTHO05D005375 9.7e-32 140.2 97 77.3
A05p17380 Brassica napus HOM05D004453 ORTHO05D005375 1.3e-31 139.8 100 76.0
BraA05t20635Z Brassica rapa HOM05D004453 ORTHO05D005375 1.3e-31 139.8 100 76.0
CARHR045220 Cardamine hirsuta HOM05D004453 ORTHO05D005375 1.3e-31 139.8 101 74.3
COL.COLO4_35070 Corchorus olitorius HOM05D004453 ORTHO05D005375 1.3e-31 139.8 99 75.8
TPR.G34071 Trifolium pratense HOM05D004453 ORTHO05D005375 1.3e-31 139.8 101 76.2
Aa31LG10G710 Aethionema arabicum HOM05D004453 ORTHO05D005375 1.7e-31 139.4 100 76.0
PGR119G0742 Punica granatum HOM05D004453 ORTHO05D005375 1.7e-31 139.4 100 74.0
Sed0012812 Sechium edule HOM05D004453 ORTHO05D005375 1.7e-31 139.4 97 73.2
BcaB02g10815 Brassica carinata HOM05D004453 ORTHO05D005375 2.2e-31 139.0 101 74.3
Oeu023964.1 Olea europaea HOM05D004453 ORTHO05D005375 2.8e-31 138.7 99 70.7
Hund01806 Selenicereus undatus HOM05D000185 ORTHO05D000105 2.8e-31 138.7 118 65.3
Actinidia30440 Actinidia chinensis HOM05D004453 ORTHO05D005375 3.7e-31 138.3 96 80.2
Glyma.20G024900 Glycine max HOM05D004453 ORTHO05D005375 3.7e-31 138.3 101 73.3
MELO3C031044.2 Cucumis melo HOM05D004453 ORTHO05D005375 4.8e-31 137.9 98 73.5
Glyma.07G225000 Glycine max HOM05D004453 ORTHO05D005375 8.2e-31 137.1 103 71.8
Gohir.A03G021700 Gossypium hirsutum HOM05D004453 ORTHO05D005375 8.2e-31 137.1 95 76.8
Gohir.D03G147000 Gossypium hirsutum HOM05D004453 ORTHO05D005375 8.2e-31 137.1 95 76.8
Lalb_Chr05g0219881 Lupinus albus HOM05D004453 ORTHO05D005375 8.2e-31 137.1 97 76.3
MBI19_g09317_MAGBIO Magnolia biondii HOM05D004453 ORTHO05D005375 8.2e-31 137.1 98 73.5
Phvul.002G101400 Phaseolus vulgaris HOM05D004453 ORTHO05D005375 8.2e-31 137.1 101 71.3
VMungo0251G3504 Vigna mungo HOM05D004453 ORTHO05D005375 8.2e-31 137.1 100 71.0
Aqoxy1G00087 Aquilegia oxysepala HOM05D004453 ORTHO05D005375 1.8e-30 136.0 98 74.5
EL10Ac7g17533 Beta vulgaris HOM05D004453 ORTHO05D005375 1.8e-30 136.0 90 75.6
Gorai.003G154400 Gossypium raimondii HOM05D004453 ORTHO05D005375 2.4e-30 135.6 95 75.8
PGR102G2973 Punica granatum HOM05D004453 ORTHO05D005375 2.4e-30 135.6 99 70.7
Ah.04g153920 Amaranthus hybridus HOM05D004453 ORTHO05D005375 3.1e-30 135.2 96 70.8
Gohir.D08G020800 Gossypium hirsutum HOM05D004453 ORTHO05D005375 3.1e-30 135.2 99 74.7
Gorai.004G020100 Gossypium raimondii HOM05D004453 ORTHO05D005375 3.1e-30 135.2 99 74.7
Psat7g133480 Pisum sativum HOM05D004453 ORTHO05D005375 3.1e-30 135.2 101 73.3
Sp3g11610 Schrenkiella parvula HOM05D004453 ORTHO05D005375 3.1e-30 135.2 98 73.5
CARHR088030 Cardamine hirsuta HOM05D004453 ORTHO05D005375 5.3e-30 134.4 96 74.0
Gohir.A08G014200 Gossypium hirsutum HOM05D004453 ORTHO05D005375 5.3e-30 134.4 99 73.7
AL3G25290 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 9.1e-30 133.7 108 67.6
A05p36110 Brassica napus HOM05D004453 ORTHO05D005375 9.1e-30 133.7 96 72.9
BcaC05g29180 Brassica carinata HOM05D004453 ORTHO05D005375 1.5e-29 132.9 96 70.8
C05p54480 Brassica napus HOM05D004453 ORTHO05D005375 1.5e-29 132.9 96 70.8
BolC5t34115H Brassica oleracea HOM05D004453 ORTHO05D005375 1.5e-29 132.9 96 70.8
Eucgr.J01746 Eucalyptus grandis HOM05D004453 ORTHO05D005375 2.0e-29 132.5 98 72.4
Potri.001G001400 Populus trichocarpa HOM05D004453 ORTHO05D005375 3.4e-29 131.7 86 80.2
Thhalv10021458m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 4.5e-29 131.3 96 70.8
Sabra01G0001000 Salix brachista HOM05D004453 ORTHO05D005375 5.9e-29 131.0 98 70.4
AT3G13420 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 7.7e-29 130.6 108 65.7
CDE02G3000 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 7.7e-29 130.6 98 68.4
CDE04G0921 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 1.3e-28 129.8 98 68.4
Potri.003G223300 Populus trichocarpa HOM05D004453 ORTHO05D005375 2.2e-28 129.0 95 69.5
Migut.N00531 Erythranthe guttata HOM05D004453 ORTHO05D005375 3.8e-28 128.3 97 70.1
HPP92_000788 Vanilla planifolia HOM05D004453 ORTHO05D005375 3.8e-28 128.3 88 71.6
Aa31LG8G630 Aethionema arabicum HOM05D004453 ORTHO05D005375 5.0e-28 127.9 98 69.4
HPP92_026813 Vanilla planifolia HOM05D004453 ORTHO05D005375 5.0e-28 127.9 87 72.4
Lsat_1_v5_gn_1_71301 Lactuca sativa HOM05D004453 ORTHO05D005375 6.5e-28 127.5 105 69.5
Carub.0003s1279 Capsella rubella HOM05D004453 ORTHO05D005375 1.1e-27 126.7 96 70.8
QL01p007909 Quercus lobata HOM05D004453 ORTHO05D005375 3.2e-27 125.2 87 74.7
SEGI_24089 Sequoiadendron giganteum HOM05D004453 ORTHO05D005375 4.2e-27 124.8 97 66.0
Os07g0223700 Oryza sativa ssp. japonica HOM05D004453 ORTHO05D005375 9.4e-27 123.6 88 72.7
SGA_v2.0_scaffold6G03329 Striga asiatica HOM05D004453 ORTHO05D005375 2.1e-26 122.5 88 70.5
Zm00001eb303530 Zea mays HOM05D004453 ORTHO05D005375 2.1e-26 122.5 90 70.0
MSTRG.18889 Avicennia marina HOM05D004453 ORTHO05D005375 6.1e-26 120.9 108 63.9
SGA_v2.0_scaffold3G01700 Striga asiatica HOM05D004453 ORTHO05D005375 2.6e-24 115.5 89 66.3
HPP92_019023 Vanilla planifolia HOM05D004453 ORTHO05D005375 7.4e-24 114.0 94 61.7
SMO271G0148 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 1.3e-23 113.2 82 70.7
AagrBONN_evm.TU.Sc2ySwM_228.4359 Anthoceros agrestis HOM05D004453 ORTHO05D005375 1.7e-23 112.8 94 60.6
SalBow3G0087 Salvia bowleyana HOM05D004453 ORTHO05D005375 1.8e-22 109.4 98 56.1
SHI31305 Sapria himalayana HOM05D004453 ORTHO05D005375 4.1e-22 108.2 75 76.0
SMO203G0107 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 2.6e-21 105.5 107 54.2
Pp3c14_21170 Physcomitrium patens HOM05D004453 ORTHO05D005375 1.0e-20 103.6 93 57.0
Nitab4.5_0002355g0020 Nicotiana tabacum HOM05D004453 ORTHO05D005375 1.7e-20 102.8 70 74.3
Pp3c1_38420 Physcomitrium patens HOM05D004453 ORTHO05D005375 6.5e-20 100.9 88 61.4
Mapoly0036s0042 Marchantia polymorpha HOM05D004453 ORTHO05D005375 8.5e-20 100.5 85 62.4
CARHR152870 Cardamine hirsuta HOM05D004453 ORTHO05D005375 3.2e-19 98.6 66 81.8
Pp3c2_4610 Physcomitrium patens HOM05D004453 ORTHO05D005375 1.6e-18 96.3 84 57.1
Haze_22921 Corylus avellana HOM05D004453 ORTHO05D005375 2.1e-18 95.9 61 85.2
unitig_62.g23532 Utricularia gibba HOM05D004453 ORTHO05D005375 3.0e-17 92.0 99 54.5
unitig_52.g17526 Utricularia gibba HOM05D004453 ORTHO05D005375 6.7e-17 90.9 73 64.4
SMO353G0048 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 7.5e-16 87.4 95 52.6
Nitab4.5_0000075g0210 Nicotiana tabacum HOM05D004453 ORTHO05D005375 3.1e-14 82.0 111 45.9
SHI06880 Sapria himalayana HOM05D004453 ORTHO05D005375 4.1e-14 81.6 71 66.2
SMO308G0081 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 1.1e-06 57.0 48 70.8
CBR_g35002 Chara braunii HOM05D000321 ORTHO05D000204 1.8e-06 56.2 73 50.7


User provided reference genes

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