Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1C53G8 Lonicera japonica HOM05D000097 ORTHO05D000041 3.1e-63 245.0 125 100.0
Lj1C52T4 Lonicera japonica HOM05D000097 ORTHO05D000041 4.2e-36 154.8 104 79.8
Lj1A53G40 Lonicera japonica HOM05D000097 ORTHO05D000041 5.2e-34 147.9 104 78.8
Lj1C54T4 Lonicera japonica HOM05D000097 ORTHO05D000041 4.4e-33 144.8 104 76.0
Lj1C53G9 Lonicera japonica HOM05D000097 ORTHO05D000041 1.0e-26 123.6 85 75.3
Lj1C54T1 Lonicera japonica HOM05D000097 ORTHO05D000041 4.0e-18 95.1 94 54.3
Lj1A53G41 Lonicera japonica HOM05D000097 ORTHO05D000041 1.5e-17 93.2 94 54.3
Lj1C52T3 Lonicera japonica HOM05D000097 ORTHO05D000041 5.8e-17 91.3 94 53.2
CiPaw.08G151400 Carya illinoinensis HOM05D000097 ORTHO05D000041 1.2e-11 73.6 89 42.7
Actinidia00777 Actinidia chinensis HOM05D000097 ORTHO05D000041 4.7e-11 71.6 100 40.0
GSVIVG01019157001 Vitis vinifera HOM05D000097 ORTHO05D000041 4.7e-11 71.6 112 41.1
PGR119G1822 Punica granatum HOM05D000097 ORTHO05D000041 1.8e-10 69.7 101 39.6
CiPaw.08G151200 Carya illinoinensis HOM05D000097 ORTHO05D000041 4.0e-10 68.6 87 41.4
Haze_04651 Corylus avellana HOM05D000097 ORTHO05D000041 4.0e-10 68.6 91 39.6
PGR119G1681 Punica granatum HOM05D000097 ORTHO05D000041 5.2e-10 68.2 102 42.2
arahy.Tifrunner.gnm1.ann1.6ST5A0 Arachis hypogaea HOM05D000097 ORTHO05D000041 6.8e-10 67.8 100 40.0
Dinv27239 Davidia involucrata HOM05D000097 ORTHO05D000041 6.8e-10 67.8 98 40.8
Dinv29595 Davidia involucrata HOM05D000097 ORTHO05D000041 6.8e-10 67.8 98 40.8
Phvul.006G170700 Phaseolus vulgaris HOM05D000097 ORTHO05D000041 6.8e-10 67.8 95 38.9
Actinidia19957 Actinidia chinensis HOM05D000097 ORTHO05D000041 8.9e-10 67.4 100 39.0
Ciclev10019036m.g Citrus clementina HOM05D000097 ORTHO05D000041 8.9e-10 67.4 103 41.7
Migut.N02030 Erythranthe guttata HOM05D000097 ORTHO05D000041 8.9e-10 67.4 93 36.6
TAR362G0859 Trochodendron aralioides HOM05D000097 ORTHO05D000041 1.5e-09 66.6 96 44.8
arahy.Tifrunner.gnm1.ann1.KVPH3I Arachis hypogaea HOM05D000097 ORTHO05D000041 2.0e-09 66.2 100 39.0
Sabra02G0039800 Salix brachista HOM05D000097 ORTHO05D000041 2.0e-09 66.2 92 38.0
arahy.Tifrunner.gnm1.ann1.H5F011 Arachis hypogaea HOM05D000097 ORTHO05D000041 3.4e-09 65.5 96 41.7
CiPaw.08G151500 Carya illinoinensis HOM05D000097 ORTHO05D000041 3.4e-09 65.5 90 41.1
Glyma.13G224800 Glycine max HOM05D000097 ORTHO05D000041 4.4e-09 65.1 101 39.6
QL12p042017 Quercus lobata HOM05D000097 ORTHO05D000041 5.8e-09 64.7 101 34.7
QL12p042001 Quercus lobata HOM05D000097 ORTHO05D000041 7.5e-09 64.3 102 33.3
RcHm_v2.0_Chr4g0413451 Rosa chinensis HOM05D000097 ORTHO05D000041 7.5e-09 64.3 92 38.0
VMungo0540G1282 Vigna mungo HOM05D000097 ORTHO05D000041 7.5e-09 64.3 95 36.8
Oeu023628.1 Olea europaea HOM05D000097 ORTHO05D000041 9.9e-09 63.9 93 35.5
TWI12G0958 Tripterygium wilfordii HOM05D000097 ORTHO05D000041 9.9e-09 63.9 90 40.0
GSVIVG01019314001 Vitis vinifera HOM05D000097 ORTHO05D000041 9.9e-09 63.9 94 39.4
COL.COLO4_09198 Corchorus olitorius HOM05D000097 ORTHO05D000041 1.3e-08 63.5 103 40.8
GSVIVG01001207001 Vitis vinifera HOM05D002297 ORTHO05D002385 1.3e-08 63.5 96 38.5
GSVIVG01001209001 Vitis vinifera HOM05D000097 ORTHO05D000041 1.3e-08 63.5 96 38.5
GSVIVG01001211001 Vitis vinifera HOM05D000097 ORTHO05D000041 1.3e-08 63.5 96 38.5
GSVIVG01001212001 Vitis vinifera HOM05D000097 ORTHO05D000041 2.9e-08 62.4 93 38.7
Ciclev10013976m.g Citrus clementina HOM05D000097 ORTHO05D000041 3.7e-08 62.0 99 38.4
Prupe.8G235400 Prunus persica HOM05D000097 ORTHO05D000041 3.7e-08 62.0 94 41.5
RcHm_v2.0_Chr6g0290151 Rosa chinensis HOM05D000097 ORTHO05D000041 3.7e-08 62.0 104 35.6
GSVIVG01017530001 Vitis vinifera HOM05D000097 ORTHO05D000041 3.7e-08 62.0 93 37.6
FvH4_4g13500 Fragaria vesca HOM05D000097 ORTHO05D000041 4.9e-08 61.6 92 35.9
FAN12G1652 Fragaria x ananassa HOM05D000097 ORTHO05D000041 4.9e-08 61.6 92 35.9
RcHm_v2.0_Chr6g0290091 Rosa chinensis HOM05D000097 ORTHO05D000041 4.9e-08 61.6 101 36.6
RcHm_v2.0_Chr6g0290111 Rosa chinensis HOM05D000097 ORTHO05D000041 4.9e-08 61.6 101 36.6
SalBow6G2878 Salvia bowleyana HOM05D000097 ORTHO05D000041 6.4e-08 61.2 95 35.8
SalBow6G5415 Salvia bowleyana HOM05D000097 ORTHO05D000041 6.4e-08 61.2 95 35.8
CiPaw.15G182200 Carya illinoinensis HOM05D000097 ORTHO05D000041 1.1e-07 60.5 100 35.0
Hma1.2p1_0172F.1_g075930 Hydrangea macrophylla HOM05D000097 ORTHO05D000041 1.1e-07 60.5 105 35.2
Thecc.04G204300 Theobroma cacao HOM05D000097 ORTHO05D000041 1.1e-07 60.5 103 33.0
Gohir.D08G072900 Gossypium hirsutum HOM05D000097 ORTHO05D000041 1.4e-07 60.1 93 39.8
GSVIVG01017538001 Vitis vinifera HOM05D000097 ORTHO05D000041 1.4e-07 60.1 93 37.6
Gorai.004G077300 Gossypium raimondii HOM05D000097 ORTHO05D000041 1.9e-07 59.7 93 39.8
RcHm_v2.0_Chr4g0414131 Rosa chinensis HOM05D000097 ORTHO05D000041 1.9e-07 59.7 94 33.0
Thecc.01G272600 Theobroma cacao HOM05D000097 ORTHO05D000041 1.9e-07 59.7 94 43.6
CiPaw.07G087700 Carya illinoinensis HOM05D000097 ORTHO05D000041 2.4e-07 59.3 92 39.1
Haze_01933 Corylus avellana HOM05D000097 ORTHO05D000041 2.4e-07 59.3 91 37.4
FAN22G2417 Fragaria x ananassa HOM05D000097 ORTHO05D000041 2.4e-07 59.3 94 34.0
Hma1.2p1_0172F.1_g075910 Hydrangea macrophylla HOM05D000097 ORTHO05D000041 2.4e-07 59.3 93 37.6
PSO210G6515 Papaver somniferum HOM05D000097 ORTHO05D000041 2.4e-07 59.3 101 40.6
Dinv38234 Davidia involucrata HOM05D000097 ORTHO05D000041 3.2e-07 58.9 90 37.8
Duzib212G0087 Durio zibethinus HOM05D000097 ORTHO05D000041 4.1e-07 58.5 90 38.9
FAN27G0465 Fragaria x ananassa HOM05D000097 ORTHO05D000041 4.1e-07 58.5 93 36.6
GSVIVG01017534001 Vitis vinifera HOM05D000097 ORTHO05D000041 5.4e-07 58.2 93 36.6
Glyma.15G087500 Glycine max HOM05D000097 ORTHO05D000041 7.1e-07 57.8 94 40.4
Atru.chr5.1508 Acer truncatum HOM05D000097 ORTHO05D000041 9.2e-07 57.4 96 33.3
Duzib268G1646 Durio zibethinus HOM05D000097 ORTHO05D000041 9.2e-07 57.4 86 37.2
Potri.002G048832 Populus trichocarpa HOM05D000097 ORTHO05D000041 9.2e-07 57.4 95 32.6
GSVIVG01017541001 Vitis vinifera HOM05D000097 ORTHO05D000041 9.2e-07 57.4 90 36.7
ClCG00G002910 Citrullus lanatus HOM05D000097 ORTHO05D000041 1.2e-06 57.0 122 30.3
ClCG07G000470 Citrullus lanatus HOM05D000097 ORTHO05D000041 1.2e-06 57.0 122 30.3
MBI15_g10089_MAGBIO Magnolia biondii HOM05D000097 ORTHO05D000041 1.6e-06 56.6 107 27.1
Phvul.003G099900 Phaseolus vulgaris HOM05D000097 ORTHO05D000041 1.6e-06 56.6 92 34.8
Prupe.1G007500 Prunus persica HOM05D000097 ORTHO05D000041 1.6e-06 56.6 111 35.1
Cfa006188 Carpinus fangiana HOM05D000097 ORTHO05D000041 2.1e-06 56.2 94 37.2
FAN24G3408 Fragaria x ananassa HOM05D000097 ORTHO05D000041 2.1e-06 56.2 94 38.3
GSVIVG01003105001 Vitis vinifera HOM05D000097 ORTHO05D000041 2.7e-06 55.8 110 34.5
Sabra02G0039700 Salix brachista HOM05D000097 ORTHO05D000041 3.5e-06 55.5 113 31.0
CiPaw.15G182000 Carya illinoinensis HOM05D000097 ORTHO05D000041 4.6e-06 55.1 102 35.3
CiPaw.16G117900 Carya illinoinensis HOM05D000097 ORTHO05D000041 4.6e-06 55.1 98 32.7
Prupe.1G160000 Prunus persica HOM05D000097 ORTHO05D000041 4.6e-06 55.1 106 32.1
arahy.Tifrunner.gnm1.ann1.FM96X3 Arachis hypogaea HOM05D000097 ORTHO05D000041 6.0e-06 54.7 101 33.7
FvH4_2g23030 Fragaria vesca HOM05D000097 ORTHO05D000041 6.0e-06 54.7 94 37.2
FAN15G0124 Fragaria x ananassa HOM05D000097 ORTHO05D000041 6.0e-06 54.7 93 37.6
TAR362G0086 Trochodendron aralioides HOM05D000097 ORTHO05D000041 6.0e-06 54.7 93 37.6


User provided reference genes

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