Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1C43T4 Lonicera japonica HOM05D004053 ORTHO05D005065 2.4e-243 845.1 432 100.0
GSVIVG01011074001 Vitis vinifera HOM05D004053 ORTHO05D005065 2.5e-128 463.0 433 56.8
Haze_04757 Corylus avellana HOM05D004053 ORTHO05D005065 3.4e-125 452.6 435 56.3
Ciclev10020315m.g Citrus clementina HOM05D004053 ORTHO05D005065 1.7e-124 450.3 435 55.4
TAR362G1031 Trochodendron aralioides HOM05D004053 ORTHO05D005065 4.2e-123 445.7 440 55.9
Manes.01G210500 Manihot esculenta HOM05D004053 ORTHO05D005065 1.0e-121 441.0 437 54.9
QL12p022856 Quercus lobata HOM05D004053 ORTHO05D005065 3.3e-120 436.0 434 54.6
CSS0023044 Camellia sinensis var. sinensis HOM05D004053 ORTHO05D005065 1.4e-118 430.6 438 55.5
Cfa006097 Carpinus fangiana HOM05D004053 ORTHO05D005065 3.1e-118 429.5 435 54.7
vmacro02546 Vaccinium macrocarpon HOM05D004053 ORTHO05D005065 5.3e-118 428.7 435 54.0
DCAR_005821 Daucus carota HOM05D004053 ORTHO05D005065 9.0e-118 427.9 437 56.1
Atru.chr5.1352 Acer truncatum HOM05D004053 ORTHO05D005065 2.0e-117 426.8 430 54.9
Actinidia24316 Actinidia chinensis HOM05D004053 ORTHO05D005065 2.0e-117 426.8 436 54.8
Dinv11260 Davidia involucrata HOM05D004053 ORTHO05D005065 3.4e-117 426.0 360 62.8
Rhsim13G0022200 Rhododendron simsii HOM05D004053 ORTHO05D005065 2.9e-116 422.9 436 53.2
Hma1.2p1_0257F.1_g103830 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 5.4e-115 418.7 396 56.8
Duzib138G0912 Durio zibethinus HOM05D004053 ORTHO05D005065 2.7e-114 416.4 438 52.3
CiPaw.07G095100 Carya illinoinensis HOM05D004053 ORTHO05D005065 3.5e-114 416.0 435 52.9
Duzib133G0805 Durio zibethinus HOM05D004053 ORTHO05D005065 2.3e-113 413.3 437 51.7
Thecc.01G284500 Theobroma cacao HOM05D004053 ORTHO05D005065 2.1e-111 406.8 437 50.1
Nitab4.5_0008204g0020 Nicotiana tabacum HOM05D004053 ORTHO05D005065 9.0e-110 401.4 436 50.7
Nn4g26160 Nelumbo nucifera HOM05D004053 ORTHO05D005065 3.4e-109 399.4 442 52.5
Potri.014G138200 Populus trichocarpa HOM05D004053 ORTHO05D005065 2.9e-108 396.4 437 52.2
Prupe.8G245900 Prunus persica HOM05D004053 ORTHO05D005065 3.8e-108 396.0 433 50.6
Cpa.g.sc9.119 Carica papaya HOM05D004053 ORTHO05D005065 8.4e-108 394.8 447 49.0
ECA248G2902 Erigeron canadensis HOM05D004053 ORTHO05D005065 1.1e-107 394.4 427 55.7
Gorai.007G133800 Gossypium raimondii HOM05D004053 ORTHO05D005065 7.1e-107 391.7 436 49.3
Gohir.D11G124800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 3.5e-106 389.4 436 49.1
Nitab4.5_0001323g0010 Nicotiana tabacum HOM05D004053 ORTHO05D005065 1.1e-104 384.4 448 48.7
CANSAT25G0924 Cannabis sativa HOM05D004053 ORTHO05D005065 1.5e-104 384.0 436 48.4
Peaxi162Scf00777g00211 Petunia axillaris HOM05D004053 ORTHO05D005065 1.1e-102 377.9 438 50.2
Gohir.A12G006400 Gossypium hirsutum HOM05D004053 ORTHO05D005065 1.8e-102 377.1 439 48.7
Potri.002G215800 Populus trichocarpa HOM05D004053 ORTHO05D005065 1.8e-102 377.1 435 49.4
Gohir.D12G005800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 4.0e-102 375.9 439 48.5
HanXRQChr02g0046661 Helianthus annuus HOM05D004053 ORTHO05D005065 6.9e-102 375.2 429 53.1
Cc01_g19820 Coffea canephora HOM05D004053 ORTHO05D005065 2.6e-101 373.2 436 50.0
Oeu011173.1 Olea europaea HOM05D004053 ORTHO05D005065 2.6e-101 373.2 438 48.9
Solyc09g072990.3 Solanum lycopersicum HOM05D004053 ORTHO05D005065 2.6e-101 373.2 439 49.0
Gorai.008G005800 Gossypium raimondii HOM05D004053 ORTHO05D005065 4.5e-101 372.5 439 48.5
Lsat_1_v5_gn_5_187500 Lactuca sativa HOM05D004053 ORTHO05D005065 5.0e-100 369.0 443 53.0
FAN24G1933 Fragaria x ananassa HOM05D004053 ORTHO05D005065 1.9e-99 367.1 431 49.4
FAN20G0349 Fragaria x ananassa HOM05D004053 ORTHO05D005065 2.5e-99 366.7 431 49.7
RcHm_v2.0_Chr6g0291821 Rosa chinensis HOM05D004053 ORTHO05D005065 3.2e-99 366.3 431 49.9
FvH4_2g24050 Fragaria vesca HOM05D004053 ORTHO05D005065 4.2e-99 365.9 431 49.4
Gohir.A11G120100 Gossypium hirsutum HOM05D004053 ORTHO05D005065 5.5e-99 365.5 436 47.5
HanXRQChr01g0002441 Helianthus annuus HOM05D004053 ORTHO05D005065 5.5e-99 365.5 434 53.7
PGSC0003DMG400003799 Solanum tuberosum HOM05D004053 ORTHO05D005065 2.7e-98 363.2 441 49.0
FAN15G3549 Fragaria x ananassa HOM05D004053 ORTHO05D005065 7.9e-98 361.7 431 48.7
Sopen09g028800 Solanum pennellii HOM05D004053 ORTHO05D005065 7.9e-98 361.7 441 48.5
Eucgr.K03405 Eucalyptus grandis HOM05D004053 ORTHO05D005065 1.3e-97 360.9 435 49.4
PSO832G4321 Papaver somniferum HOM05D004053 ORTHO05D005065 1.8e-97 360.5 441 48.3
PGR044G2575 Punica granatum HOM05D004053 ORTHO05D005065 2.3e-97 360.1 437 45.8
FAN27G0975 Fragaria x ananassa HOM05D004053 ORTHO05D005065 6.7e-97 358.6 431 49.0
MD11G1290800 Malus domestica HOM05D004053 ORTHO05D005065 1.1e-96 357.8 433 47.8
Lj2A1179G44 Lonicera japonica HOM05D004053 ORTHO05D005065 2.5e-96 356.7 353 56.4
TWI14G1274 Tripterygium wilfordii HOM05D004053 ORTHO05D005065 5.7e-96 355.5 439 47.2
Glyma.19G153300 Glycine max HOM05D004053 ORTHO05D005065 3.7e-95 352.8 433 47.3
Lj5g0001920 Lotus japonicus HOM05D004053 ORTHO05D005065 2.4e-94 350.1 437 45.8
MD03G1269800 Malus domestica HOM05D004053 ORTHO05D005065 5.3e-94 349.0 433 47.1
Aqoxy2G03230 Aquilegia oxysepala HOM05D004053 ORTHO05D005065 1.5e-93 347.4 448 48.7
Duzib211G0472 Durio zibethinus HOM05D004053 ORTHO05D005065 2.6e-93 346.7 362 52.5
Medtr1g089980 Medicago truncatula HOM05D004053 ORTHO05D005065 1.3e-92 344.4 434 45.9
Ca_10403_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 1.9e-91 340.5 436 45.6
DCAR_012450 Daucus carota HOM05D004053 ORTHO05D005065 7.2e-91 338.6 419 49.2
Glyma.03G150700 Glycine max HOM05D004053 ORTHO05D005065 9.4e-91 338.2 433 46.7
Glyma.10G024200 Glycine max HOM05D004053 ORTHO05D005065 9.4e-91 338.2 438 45.7
Glyma.02G149700 Glycine max HOM05D004053 ORTHO05D005065 1.6e-90 337.4 436 45.9
Psat6g168840 Pisum sativum HOM05D004053 ORTHO05D005065 4.6e-90 335.9 433 44.1
Phvul.001G148300 Phaseolus vulgaris HOM05D004053 ORTHO05D005065 1.0e-89 334.7 432 44.9
Lalb_Chr21g0306591 Lupinus albus HOM05D004053 ORTHO05D005065 1.4e-89 334.3 407 46.7
Migut.D00258 Erythranthe guttata HOM05D004053 ORTHO05D005065 5.1e-89 332.4 434 45.2
MSTRG.21579 Avicennia marina HOM05D004053 ORTHO05D005065 8.8e-89 331.6 435 44.4
arahy.Tifrunner.gnm1.ann1.V8R19R Arachis hypogaea HOM05D004053 ORTHO05D005065 2.0e-88 330.5 431 45.2
Sabra14G0104300 Salix brachista HOM05D004053 ORTHO05D005065 2.0e-88 330.5 462 43.7
Medtr7g094470 Medicago truncatula HOM05D004053 ORTHO05D005065 2.5e-88 330.1 433 44.8
Actinidia00729 Actinidia chinensis HOM05D004053 ORTHO05D005065 3.3e-88 329.7 321 57.0
Nn1g02136 Nelumbo nucifera HOM05D004053 ORTHO05D005065 5.7e-88 328.9 400 50.0
MELO3C014420.2 Cucumis melo HOM05D004053 ORTHO05D005065 2.2e-87 327.0 435 42.1
Lalb_Chr06g0163121 Lupinus albus HOM05D004053 ORTHO05D005065 3.7e-87 326.2 408 46.6
Ca_08561_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 6.3e-87 325.5 435 45.1
Ca_08595_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 6.3e-87 325.5 435 45.1
arahy.Tifrunner.gnm1.ann1.K8THJN Arachis hypogaea HOM05D004053 ORTHO05D005065 8.2e-87 325.1 438 44.7
CsaV3_6G036930 Cucumis sativus L. HOM05D004053 ORTHO05D005065 5.3e-86 322.4 435 41.6
Aqoxy5G00541 Aquilegia oxysepala HOM05D004053 ORTHO05D005065 1.5e-85 320.9 433 45.5
TPR.G32826 Trifolium pratense HOM05D004053 ORTHO05D005065 2.6e-85 320.1 431 43.9
Phvul.007G169200 Phaseolus vulgaris HOM05D004053 ORTHO05D005065 1.0e-84 318.2 437 45.3
ClCG07G000110 Citrullus lanatus HOM05D004053 ORTHO05D005065 2.2e-84 317.0 435 41.4
CiPaw.08G102900 Carya illinoinensis HOM05D004053 ORTHO05D005065 4.2e-83 312.8 344 51.5
Lj1g0006875 Lotus japonicus HOM05D004053 ORTHO05D005065 7.2e-83 312.0 445 43.1
VMungo0720G1290 Vigna mungo HOM05D004053 ORTHO05D005065 1.5e-80 304.3 436 43.6
Psat3g065760 Pisum sativum HOM05D004053 ORTHO05D005065 2.0e-80 303.9 433 42.0
Sc05g0005080 Simmondsia chinensis HOM05D004053 ORTHO05D005065 9.7e-80 301.6 430 43.0
EL10Ac7g17207 Beta vulgaris HOM05D004053 ORTHO05D005065 2.8e-79 300.1 438 42.7
VMungo1383G0556 Vigna mungo HOM05D004053 ORTHO05D005065 1.5e-77 294.3 433 40.9
Sp6g02950 Schrenkiella parvula HOM05D004053 ORTHO05D005065 3.8e-76 289.7 436 39.0
SalBow6G4695 Salvia bowleyana HOM05D004053 ORTHO05D005065 8.5e-76 288.5 431 42.2
PSO541G4889 Papaver somniferum HOM05D004053 ORTHO05D005065 1.1e-75 288.1 449 43.7
SGA_v2.0_scaffold1G00444 Striga asiatica HOM05D004053 ORTHO05D005065 3.2e-75 286.6 437 41.2
PSO675G9209 Papaver somniferum HOM05D004053 ORTHO05D005065 7.2e-75 285.4 448 43.3
BraA03t12252Z Brassica rapa HOM05D004053 ORTHO05D005065 8.0e-74 282.0 436 38.3
C03p37430 Brassica napus HOM05D004053 ORTHO05D005065 1.0e-73 281.6 437 38.4
THA.LOC104801216 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 1.8e-73 280.8 441 40.4
BolC3t16035H Brassica oleracea HOM05D004053 ORTHO05D005065 3.0e-73 280.0 437 38.2
A03p30730 Brassica napus HOM05D004053 ORTHO05D005065 8.8e-73 278.5 435 38.2
Thhalv10028686m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 8.8e-73 278.5 436 39.7
AT4G02920 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 7.4e-72 275.4 438 39.5
Aa31LG5G2500 Aethionema arabicum HOM05D004053 ORTHO05D005065 1.3e-71 274.6 434 36.9
CARHR251290 Cardamine hirsuta HOM05D004053 ORTHO05D005065 2.8e-71 273.5 439 38.3
THA.LOC104815946 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 4.8e-71 272.7 436 38.8
Sed0017907 Sechium edule HOM05D004053 ORTHO05D005065 1.2e-69 268.1 493 36.9
Carub.0006s3417 Capsella rubella HOM05D004053 ORTHO05D005065 1.6e-66 257.7 437 37.8
AUR62036816 Chenopodium quinoa HOM05D004053 ORTHO05D005065 8.0e-66 255.4 426 40.1
AL6G50010 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 1.2e-64 251.5 437 37.1
AUR62033710 Chenopodium quinoa HOM05D004053 ORTHO05D005065 1.7e-63 247.7 422 40.0
arahy.Tifrunner.gnm1.ann1.U9BU7H Arachis hypogaea HOM05D004053 ORTHO05D005065 4.8e-63 246.1 322 43.5
Oeu041712.1 Olea europaea HOM05D004053 ORTHO05D005065 2.0e-61 240.7 209 61.2
BcaB01g02487 Brassica carinata HOM05D004053 ORTHO05D005065 7.7e-61 238.8 437 35.5
CDE11G0853 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 4.2e-59 233.0 275 47.3
Zm00001eb417790 Zea mays HOM05D004053 ORTHO05D005065 6.8e-57 225.7 353 40.5
CDE05G2296 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 8.8e-57 225.3 275 46.2
TPR.G13395 Trifolium pratense HOM05D004053 ORTHO05D005065 6.3e-55 219.2 349 39.3
AL1G12850 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 3.1e-54 216.9 431 34.8
Os05g0143300 Oryza sativa ssp. japonica HOM05D004053 ORTHO05D005065 2.0e-53 214.2 371 36.9
MBI17_g34956_MAGBIO Magnolia biondii HOM05D004053 ORTHO05D005065 8.6e-52 208.8 299 41.5
AT1G03340 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 1.6e-50 204.5 372 35.2
Carub.0001s0245 Capsella rubella HOM05D004053 ORTHO05D005065 1.4e-49 201.4 430 35.3
Thhalv10007898m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 2.6e-48 197.2 386 33.4
Sp1g02330 Schrenkiella parvula HOM05D004053 ORTHO05D005065 9.8e-48 195.3 382 33.2
ATR0665G655 Amborella trichopoda HOM05D004053 ORTHO05D005065 1.0e-44 185.3 433 32.8
BraA10t42462Z Brassica rapa HOM05D004053 ORTHO05D005065 1.1e-38 165.2 418 30.4
arahy.Tifrunner.gnm1.ann1.F0KDF8 Arachis hypogaea HOM05D004053 ORTHO05D005065 2.5e-35 154.1 226 40.3
BcaC01g06723 Brassica carinata HOM05D004053 ORTHO05D005065 2.5e-35 154.1 170 49.4
unitig_8.g3318 Utricularia gibba HOM05D004053 ORTHO05D005065 1.8e-33 147.9 409 31.1
BcaC05g24539 Brassica carinata HOM05D004053 ORTHO05D005065 1.6e-29 134.8 172 43.6
A10p01890 Brassica napus HOM05D004053 ORTHO05D005065 3.9e-28 130.2 209 37.8
BolC2t09985H Brassica oleracea HOM05D004053 ORTHO05D005065 1.4e-25 121.7 158 44.9
C02p39720 Brassica napus HOM05D004053 ORTHO05D005065 1.8e-25 121.3 158 44.9
A02p25050 Brassica napus HOM05D004053 ORTHO05D005065 5.2e-25 119.8 158 44.3
BraA02t07493Z Brassica rapa HOM05D004053 ORTHO05D005065 5.2e-25 119.8 158 44.3
BcaC03g16190 Brassica carinata HOM05D004053 ORTHO05D005065 2.0e-24 117.9 149 45.6
Hma1.2p1_4080F.1_g338240 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 1.6e-21 108.2 126 52.4
Psat1g163200 Pisum sativum HOM05D000871 ORTHO05D008698 7.8e-21 105.9 172 34.9
RcHm_v2.0_Chr6g0291831 Rosa chinensis HOM05D004053 ORTHO05D005065 3.0e-20 104.0 85 64.7
SEGI_15237 Sequoiadendron giganteum HOM05D004053 ORTHO05D005065 2.4e-17 94.4 483 24.6
VMungo0540G1158 Vigna mungo HOM05D004053 ORTHO05D005065 1.1e-14 85.5 121 40.5
C08p10690 Brassica napus HOM05D004053 ORTHO05D031745 3.3e-11 73.9 70 51.4
BolC8t48741H Brassica oleracea HOM05D004053 ORTHO05D031745 3.3e-11 73.9 70 51.4
arahy.Tifrunner.gnm1.ann1.LMB138 Arachis hypogaea HOM05D004053 ORTHO05D005065 4.3e-11 73.6 60 65.0
BcaB04g19084 Brassica carinata HOM05D004053 ORTHO05D005065 4.3e-11 73.6 62 51.6
unitig_22.g6690 Utricularia gibba HOM05D004053 ORTHO05D005065 5.6e-11 73.2 275 30.2
BcaC01g06721 Brassica carinata HOM05D004053 ORTHO05D005065 3.6e-10 70.5 120 37.5
BcaC02g12834 Brassica carinata HOM05D004053 ORTHO05D005065 1.1e-09 68.9 85 45.9
C04p39350 Brassica napus HOM05D004053 ORTHO05D005065 2.4e-09 67.8 67 50.7
BolC4t25502H Brassica oleracea HOM05D004053 ORTHO05D005065 2.4e-09 67.8 67 50.7
BcaB06g27908 Brassica carinata HOM05D000021 ORTHO05D000010 2.0e-08 64.7 77 40.3
CARHR002650 Cardamine hirsuta HOM05D004053 ORTHO05D005065 2.6e-08 64.3 83 38.6
arahy.Tifrunner.gnm1.ann1.59R5K9 Arachis hypogaea HOM05D004053 ORTHO05D005065 5.8e-08 63.2 99 38.4
BcaC09g50477 Brassica carinata HOM05D004053 ORTHO05D005065 9.9e-08 62.4 64 50.0
A01p37840 Brassica napus HOM05D004053 ORTHO05D005065 4.9e-07 60.1 54 48.1
Hma1.2p1_0377F.1_g139390 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 3.2e-06 57.4 53 50.9


User provided reference genes

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