Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1C435T9 Lonicera japonica HOM05D004764 ORTHO05D005580 5.4e-128 461.1 243 100.0
Lj1C433T7 Lonicera japonica HOM05D004764 ORTHO05D005580 2.1e-124 449.1 242 97.5
Lj1A432T27 Lonicera japonica HOM05D004764 ORTHO05D005580 1.4e-123 446.4 242 96.7
Lj1C949T1 Lonicera japonica HOM05D004764 ORTHO05D005580 2.6e-114 415.6 242 90.9
Dinv20933 Davidia involucrata HOM05D004764 ORTHO05D005580 1.7e-97 359.8 242 80.2
Dinv21011 Davidia involucrata HOM05D004764 ORTHO05D005580 1.7e-97 359.8 242 80.2
CSS0016003 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 3.9e-94 348.6 242 76.0
CSS0010099 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 6.6e-94 347.8 242 76.0
vmacro01597 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 1.6e-92 343.2 242 73.6
HanXRQChr12g0369401 Helianthus annuus HOM05D004764 ORTHO05D005580 4.0e-91 338.6 242 73.1
Nitab4.5_0012769g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 4.9e-89 331.6 238 73.1
CAN.G308.66 Capsicum annuum HOM05D004764 ORTHO05D005580 1.4e-88 330.1 242 70.7
Sopen03g006610 Solanum pennellii HOM05D004764 ORTHO05D005580 1.4e-88 330.1 242 71.1
Migut.F01566 Erythranthe guttata HOM05D004764 ORTHO05D005580 5.4e-88 328.2 243 71.2
MD02G1196300 Malus domestica HOM05D004764 ORTHO05D005580 5.4e-88 328.2 242 72.7
Solyc04g071730.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 9.3e-88 327.4 242 70.7
Sopen04g027710 Solanum pennellii HOM05D004764 ORTHO05D005580 9.3e-88 327.4 242 70.7
Ciclev10032191m.g Citrus clementina HOM05D004764 ORTHO05D005580 1.2e-87 327.0 242 71.1
PGSC0003DMG400006372 Solanum tuberosum HOM05D004764 ORTHO05D005580 1.6e-87 326.6 242 70.7
Cfa017589 Carpinus fangiana HOM05D004764 ORTHO05D005580 3.5e-87 325.5 242 71.1
Haze_20561 Corylus avellana HOM05D004764 ORTHO05D005580 3.5e-87 325.5 242 71.1
ECA233G3311 Erigeron canadensis HOM05D004764 ORTHO05D005580 3.5e-87 325.5 243 70.4
Potri.010G194300 Populus trichocarpa HOM05D004764 ORTHO05D005580 3.5e-87 325.5 244 71.7
QL07p043722 Quercus lobata HOM05D004764 ORTHO05D005580 3.5e-87 325.5 242 71.5
CAN.G2159.1 Capsicum annuum HOM05D004764 ORTHO05D005580 4.6e-87 325.1 242 69.8
Oeu013001.1 Olea europaea HOM05D004764 ORTHO05D005580 6.0e-87 324.7 242 71.5
TWI09G1390 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 6.0e-87 324.7 242 71.5
Nitab4.5_0000344g0160 Nicotiana tabacum HOM05D004764 ORTHO05D005580 1.3e-86 323.6 242 70.2
Sabra10G0149400 Salix brachista HOM05D004764 ORTHO05D005580 1.3e-86 323.6 244 71.7
MD07G1124900 Malus domestica HOM05D004764 ORTHO05D005580 3.9e-86 322.0 242 71.1
Atru.chr12.324 Acer truncatum HOM05D004764 ORTHO05D005580 6.7e-86 321.2 242 70.2
Prupe.2G152400 Prunus persica HOM05D004764 ORTHO05D005580 6.7e-86 321.2 242 71.1
Rhsim09G0171300 Rhododendron simsii HOM05D004764 ORTHO05D005580 8.7e-86 320.9 286 62.6
Ciclev10016032m.g Citrus clementina HOM05D004764 ORTHO05D005580 1.1e-85 320.5 242 69.4
DCAR_011775 Daucus carota HOM05D004764 ORTHO05D005580 1.1e-85 320.5 242 68.6
Atru.chr12.285 Acer truncatum HOM05D004764 ORTHO05D005580 2.5e-85 319.3 242 69.8
Manes.10G019100 Manihot esculenta HOM05D004764 ORTHO05D005580 2.5e-85 319.3 242 71.1
Gorai.011G278800 Gossypium raimondii HOM05D004764 ORTHO05D005580 4.3e-85 318.5 242 70.7
TWI73G0601 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 4.3e-85 318.5 242 70.2
MSTRG.8305 Avicennia marina HOM05D004764 ORTHO05D005580 5.6e-85 318.2 242 69.4
GSVIVG01016388001 Vitis vinifera HOM05D004764 ORTHO05D005580 5.6e-85 318.2 238 72.3
SGA_v2.0_scaffold130G34221 Striga asiatica HOM05D004764 ORTHO05D005580 7.4e-85 317.8 237 70.0
Gohir.A10G228400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 1.3e-84 317.0 242 70.2
CANSAT21G1253 Cannabis sativa HOM05D004764 ORTHO05D005580 2.1e-84 316.2 242 69.4
Duzib106G0320 Durio zibethinus HOM05D004764 ORTHO05D005580 2.1e-84 316.2 242 70.7
Cc02_g20660 Coffea canephora HOM05D004764 ORTHO05D005580 4.8e-84 315.1 242 68.6
Cpa.g.sc19.234 Carica papaya HOM05D004764 ORTHO05D005580 6.2e-84 314.7 242 69.8
CiPaw.10G131000 Carya illinoinensis HOM05D004764 ORTHO05D005580 8.1e-84 314.3 242 69.8
COL.COLO4_25609 Corchorus olitorius HOM05D004764 ORTHO05D005580 1.8e-83 313.2 242 70.7
Lj2g0017902 Lotus japonicus HOM05D004764 ORTHO05D005580 2.4e-83 312.8 242 69.4
TAR623G1788 Trochodendron aralioides HOM05D004764 ORTHO05D005580 2.4e-83 312.8 242 69.0
Sc11g0007530 Simmondsia chinensis HOM05D004764 ORTHO05D005580 5.3e-83 311.6 242 68.6
Ca_25497_v3 Cicer arietinum L. HOM05D004764 ORTHO05D005580 2.0e-82 309.7 242 68.6
SalBow6G7043 Salvia bowleyana HOM05D004764 ORTHO05D005580 2.6e-82 309.3 242 68.2
Thecc.10G137500 Theobroma cacao HOM05D004764 ORTHO05D005580 2.6e-82 309.3 242 70.2
TAR369G1012 Trochodendron aralioides HOM05D004764 ORTHO05D005580 2.6e-82 309.3 242 68.2
Lsat_1_v5_gn_8_14200 Lactuca sativa HOM05D004764 ORTHO05D005580 4.5e-82 308.5 242 67.8
Glyma.09G184900 Glycine max HOM05D004764 ORTHO05D005580 7.6e-82 307.8 242 67.8
RcHm_v2.0_Chr1g0351821 Rosa chinensis HOM05D004764 ORTHO05D005580 7.6e-82 307.8 242 67.4
Medtr6g084580 Medicago truncatula HOM05D004764 ORTHO05D005580 9.9e-82 307.4 242 68.2
FAN10G3109 Fragaria x ananassa HOM05D004764 ORTHO05D005580 2.9e-81 305.8 242 66.1
FvH4_7g12790 Fragaria vesca HOM05D004764 ORTHO05D005580 3.8e-81 305.4 242 66.5
Hund16007 Selenicereus undatus HOM05D004764 ORTHO05D005580 3.8e-81 305.4 242 68.6
FAN10G1216 Fragaria x ananassa HOM05D004764 ORTHO05D005580 4.9e-81 305.1 242 66.1
Phvul.004G157700 Phaseolus vulgaris HOM05D004764 ORTHO05D005580 4.9e-81 305.1 242 66.9
VMungo0464G2049 Vigna mungo HOM05D004764 ORTHO05D005580 4.9e-81 305.1 242 67.8
Peaxi162Scf00064g00126 Petunia axillaris HOM05D004764 ORTHO05D005580 8.4e-81 304.3 242 67.4
Psat1g037840 Pisum sativum HOM05D004764 ORTHO05D005580 8.4e-81 304.3 242 67.4
Peaxi162Scf00010g01114 Petunia axillaris HOM05D004764 ORTHO05D005580 7.1e-80 301.2 242 66.9
THA.LOC104816565 Tarenaya hassleriana HOM05D004764 ORTHO05D005580 9.3e-80 300.8 242 65.7
Lj1g0004796 Lotus japonicus HOM05D004764 ORTHO05D005580 1.6e-79 300.1 242 67.8
Sed0006926 Sechium edule HOM05D004764 ORTHO05D005580 1.6e-79 300.1 243 66.3
MELO3C008270.2 Cucumis melo HOM05D004764 ORTHO05D005580 4.6e-79 298.5 242 65.3
PGR142G0534 Punica granatum HOM05D004764 ORTHO05D005580 4.6e-79 298.5 242 66.5
EL10Ac2g04766 Beta vulgaris HOM05D004764 ORTHO05D005580 3.0e-78 295.8 242 65.7
Lalb_Chr14g0371191 Lupinus albus HOM05D004764 ORTHO05D005580 1.1e-77 293.9 242 65.3
Potri.008G063100 Populus trichocarpa HOM05D004764 ORTHO05D005580 3.3e-77 292.4 228 68.9
Aqoxy1G00756 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 9.6e-77 290.8 244 65.6
Thhalv10011542m.g Eutrema salsugineum HOM05D004764 ORTHO05D005580 9.6e-77 290.8 242 63.6
Aqoxy7G01280 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 1.3e-76 290.4 244 64.8
Sp1g38390 Schrenkiella parvula HOM05D004764 ORTHO05D005580 2.8e-76 289.3 242 63.2
Lalb_Chr22g0353041 Lupinus albus HOM05D004764 ORTHO05D005580 4.8e-76 288.5 242 65.3
Lsat_1_v5_gn_9_12660 Lactuca sativa HOM05D004764 ORTHO05D005580 6.2e-76 288.1 244 64.8
AUR62032348 Chenopodium quinoa HOM05D004764 ORTHO05D005580 1.1e-75 287.3 242 62.4
Ah.16g104720 Amaranthus hybridus HOM05D004764 ORTHO05D005580 1.4e-75 287.0 242 62.4
ClCG11G006420 Citrullus lanatus HOM05D004764 ORTHO05D005580 1.4e-75 287.0 242 63.6
C06p07040 Brassica napus HOM05D004764 ORTHO05D005580 2.4e-75 286.2 243 62.6
BolC6t35797H Brassica oleracea HOM05D004764 ORTHO05D005580 2.4e-75 286.2 243 62.6
CARHR041910 Cardamine hirsuta HOM05D004764 ORTHO05D005580 2.4e-75 286.2 242 62.8
Aa31LG10G3070 Aethionema arabicum HOM05D004764 ORTHO05D005580 3.1e-75 285.8 242 63.2
FAN01G0026 Fragaria x ananassa HOM05D004764 ORTHO05D005580 3.1e-75 285.8 277 57.4
A06p02240 Brassica napus HOM05D004764 ORTHO05D005580 5.3e-75 285.0 243 62.6
AL1G59680 Arabidopsis lyrata HOM05D004764 ORTHO05D005580 6.9e-75 284.6 243 62.6
arahy.Tifrunner.gnm1.ann1.BR1H5V Arachis hypogaea HOM05D004764 ORTHO05D005580 6.9e-75 284.6 242 62.8
BcaC08g43344 Brassica carinata HOM05D004764 ORTHO05D005580 9.0e-75 284.3 243 62.1
BraA06t23434Z Brassica rapa HOM05D004764 ORTHO05D005580 1.2e-74 283.9 243 62.1
Eucgr.G03020 Eucalyptus grandis HOM05D004764 ORTHO05D005580 2.6e-74 282.7 242 64.9
PSO585G0029 Papaver somniferum HOM05D004764 ORTHO05D005580 3.4e-74 282.3 244 63.1
Ah.02g115950 Amaranthus hybridus HOM05D004764 ORTHO05D005580 5.8e-74 281.6 242 61.6
BcaB07g33630 Brassica carinata HOM05D004764 ORTHO05D005580 6.5e-73 278.1 243 61.3
AT1G51740 Arabidopsis thaliana HOM05D004764 ORTHO05D005580 8.4e-73 277.7 243 61.7
unitig_0.g2163 Utricularia gibba HOM05D004764 ORTHO05D005580 1.1e-72 277.3 245 62.0
BcaB02g11053 Brassica carinata HOM05D004764 ORTHO05D005580 1.4e-72 276.9 244 60.2
PSO384G2817 Papaver somniferum HOM05D004764 ORTHO05D005580 5.5e-72 275.0 244 62.7
Carub.0001s4061 Capsella rubella HOM05D004764 ORTHO05D005580 7.1e-72 274.6 244 61.5
Solyc03g033850.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 7.1e-72 274.6 201 70.6
arahy.Tifrunner.gnm1.ann1.V0Z2W7 Arachis hypogaea HOM05D004764 ORTHO05D005580 2.7e-71 272.7 242 61.2
Gohir.D10G242400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 7.9e-71 271.2 210 70.0
Actinidia00927 Actinidia chinensis HOM05D004764 ORTHO05D005580 3.9e-70 268.9 243 63.4
Zm00001eb429110 Zea mays HOM05D004764 ORTHO05D005580 1.1e-69 267.3 244 59.4
ATR0736G027 Amborella trichopoda HOM05D004764 ORTHO05D005580 5.7e-69 265.0 245 60.8
CsaV3_6G001590 Cucumis sativus L. HOM05D004764 ORTHO05D005580 5.7e-69 265.0 223 64.1
Os12g0154400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 9.7e-69 264.2 243 58.8
Os04g0530400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 1.6e-68 263.5 243 58.8
SEGI_31890 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 5.7e-61 238.4 244 55.3
FAN06G0806 Fragaria x ananassa HOM05D004764 ORTHO05D005580 9.7e-61 237.7 188 67.0
AUR62041843 Chenopodium quinoa HOM05D004764 ORTHO05D005580 2.8e-60 236.1 242 54.5
Nitab4.5_0011923g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 2.5e-56 223.0 138 78.3
Glyma.07G091000 Glycine max HOM05D004764 ORTHO05D005580 7.9e-55 218.0 242 54.1
Nn5g27977 Nelumbo nucifera HOM05D004764 ORTHO05D005580 1.4e-54 217.2 242 56.2
SHI03532 Sapria himalayana HOM05D004764 ORTHO05D005580 3.9e-54 215.7 243 53.5
TPR.G27934 Trifolium pratense HOM05D004764 ORTHO05D005580 2.6e-50 203.0 211 52.6
vmacro10073 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 3.8e-49 199.1 154 68.8
HPP92_027811 Vanilla planifolia HOM05D004764 ORTHO05D005580 8.8e-46 188.0 244 45.5
Nitab4.5_0002828g0150 Nicotiana tabacum HOM05D004764 ORTHO05D005580 7.7e-42 174.9 277 43.3
Mapoly0024s0083 Marchantia polymorpha HOM05D004764 ORTHO05D005580 1.7e-41 173.7 246 43.1
Pp3c6_24680 Physcomitrium patens HOM05D004764 ORTHO05D005580 1.6e-39 167.2 247 39.7
SMO356G0668 Selaginella moellendorffii HOM05D004764 ORTHO05D005580 2.6e-37 159.8 251 41.0
HPP92_004405 Vanilla planifolia HOM05D004764 ORTHO05D005580 3.4e-37 159.5 121 64.5
AagrBONN_evm.TU.Sc2ySwM_368.928 Anthoceros agrestis HOM05D004764 ORTHO05D005580 3.6e-31 139.4 224 39.3
vmacro10074 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 2.0e-29 133.7 110 65.5
Actinidia27825 Actinidia chinensis HOM05D004764 ORTHO05D005580 3.4e-29 132.9 109 71.6
Eucgr.L03566 Eucalyptus grandis HOM05D004764 ORTHO05D005580 4.4e-29 132.5 91 72.5
PSO339G3467 Papaver somniferum HOM05D004764 ORTHO05D005580 1.2e-23 114.4 115 58.3
Oeu032670.1 Olea europaea HOM05D004764 ORTHO05D005580 2.1e-23 113.6 105 65.7
SEGI_41058 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 2.3e-22 110.2 89 62.9
BcaC08g43936 Brassica carinata HOM05D004764 ORTHO05D005580 4.0e-22 109.4 100 56.0
C06p13300 Brassica napus HOM05D001194 ORTHO05D005580 4.0e-22 109.4 200 42.0
Sabra08G0046500 Salix brachista HOM05D004764 ORTHO05D005580 7.0e-19 98.6 217 33.6
Actinidia13908 Actinidia chinensis HOM05D004764 ORTHO05D005580 2.3e-17 93.6 58 79.3
MCO05G144 Micromonas commoda HOM05D004764 ORTHO05D005580 6.6e-17 92.0 239 29.7
CDE09G0086 Ceratophyllum demersum HOM05D004764 ORTHO05D005580 5.6e-16 89.0 116 47.4
BcaC08g43937 Brassica carinata HOM05D001194 ORTHO05D004786 1.1e-11 74.7 108 50.9
Sc11g0007520 Simmondsia chinensis HOM05D004764 ORTHO05D005580 7.0e-11 72.0 92 50.0
PRCOL_00004763 Prasinoderma coloniale HOM05D001748 ORTHO05D001759 1.3e-09 67.8 158 34.2
Actinidia13909 Actinidia chinensis HOM05D004764 ORTHO05D005580 2.3e-09 67.0 60 66.7
Cre17.g711450 Chlamydomonas reinhardtii HOM05D004764 ORTHO05D005580 9.5e-08 61.6 181 30.4
BolC6t36490H Brassica oleracea HOM05D001194 ORTHO05D000015 2.1e-07 60.5 199 29.6
Zm00001eb427200 Zea mays HOM05D004764 ORTHO05D005580 3.6e-07 59.7 85 48.2
vmacro10891 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 2.3e-06 57.0 62 59.7
HanXRQChr16g0528961 Helianthus annuus HOM05D004764 ORTHO05D005580 3.1e-06 56.6 90 40.0


User provided reference genes

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