Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1C433T7 Lonicera japonica HOM05D004764 ORTHO05D005580 7.9e-141 503.8 265 100.0
Lj1A432T27 Lonicera japonica HOM05D004764 ORTHO05D005580 1.9e-134 482.6 256 99.2
Lj1C949T1 Lonicera japonica HOM05D004764 ORTHO05D005580 4.7e-125 451.4 256 93.4
Lj1C435T9 Lonicera japonica HOM05D004764 ORTHO05D005580 5.1e-124 448.0 242 97.5
Dinv20933 Davidia involucrata HOM05D004764 ORTHO05D005580 3.0e-108 395.6 256 83.2
Dinv21011 Davidia involucrata HOM05D004764 ORTHO05D005580 3.0e-108 395.6 256 83.2
CSS0016003 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 7.0e-105 384.4 256 79.3
CSS0010099 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 1.2e-104 383.6 256 79.3
vmacro01597 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 2.9e-103 379.0 256 77.0
HanXRQChr12g0369401 Helianthus annuus HOM05D004764 ORTHO05D005580 7.2e-102 374.4 256 76.6
Sopen03g006610 Solanum pennellii HOM05D004764 ORTHO05D005580 2.6e-99 365.9 256 74.6
Nitab4.5_0012769g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 5.7e-99 364.8 256 75.0
CAN.G308.66 Capsicum annuum HOM05D004764 ORTHO05D005580 7.5e-99 364.4 256 73.8
MD02G1196300 Malus domestica HOM05D004764 ORTHO05D005580 7.5e-99 364.4 256 76.2
Migut.F01566 Erythranthe guttata HOM05D004764 ORTHO05D005580 9.8e-99 364.0 257 74.7
Solyc04g071730.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 1.7e-98 363.2 256 74.2
Sopen04g027710 Solanum pennellii HOM05D004764 ORTHO05D005580 1.7e-98 363.2 256 74.2
PGSC0003DMG400006372 Solanum tuberosum HOM05D004764 ORTHO05D005580 2.8e-98 362.5 256 74.2
Cfa017589 Carpinus fangiana HOM05D004764 ORTHO05D005580 6.3e-98 361.3 256 74.6
Ciclev10032191m.g Citrus clementina HOM05D004764 ORTHO05D005580 6.3e-98 361.3 256 74.2
Haze_20561 Corylus avellana HOM05D004764 ORTHO05D005580 6.3e-98 361.3 256 74.6
Potri.010G194300 Populus trichocarpa HOM05D004764 ORTHO05D005580 6.3e-98 361.3 258 75.2
QL07p043722 Quercus lobata HOM05D004764 ORTHO05D005580 6.3e-98 361.3 256 75.0
Oeu013001.1 Olea europaea HOM05D004764 ORTHO05D005580 1.1e-97 360.5 256 75.0
TWI09G1390 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 1.1e-97 360.5 256 75.0
ECA233G3311 Erigeron canadensis HOM05D004764 ORTHO05D005580 1.4e-97 360.1 257 73.5
CAN.G2159.1 Capsicum annuum HOM05D004764 ORTHO05D005580 2.4e-97 359.4 256 73.0
Nitab4.5_0000344g0160 Nicotiana tabacum HOM05D004764 ORTHO05D005580 2.4e-97 359.4 256 73.8
Sabra10G0149400 Salix brachista HOM05D004764 ORTHO05D005580 2.4e-97 359.4 258 75.2
Prupe.2G152400 Prunus persica HOM05D004764 ORTHO05D005580 9.1e-97 357.5 256 74.6
Atru.chr12.324 Acer truncatum HOM05D004764 ORTHO05D005580 1.2e-96 357.1 256 73.8
MD07G1124900 Malus domestica HOM05D004764 ORTHO05D005580 1.6e-96 356.7 256 74.6
Ciclev10016032m.g Citrus clementina HOM05D004764 ORTHO05D005580 2.0e-96 356.3 256 73.0
DCAR_011775 Daucus carota HOM05D004764 ORTHO05D005580 2.0e-96 356.3 256 72.3
Rhsim09G0171300 Rhododendron simsii HOM05D004764 ORTHO05D005580 3.5e-96 355.5 300 65.7
Atru.chr12.285 Acer truncatum HOM05D004764 ORTHO05D005580 4.5e-96 355.1 256 73.4
TWI73G0601 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 7.7e-96 354.4 256 73.8
MSTRG.8305 Avicennia marina HOM05D004764 ORTHO05D005580 1.0e-95 354.0 256 73.0
Gorai.011G278800 Gossypium raimondii HOM05D004764 ORTHO05D005580 1.7e-95 353.2 256 73.8
SGA_v2.0_scaffold130G34221 Striga asiatica HOM05D004764 ORTHO05D005580 2.9e-95 352.4 256 72.3
Gohir.A10G228400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 5.0e-95 351.7 256 73.4
Manes.10G019100 Manihot esculenta HOM05D004764 ORTHO05D005580 5.0e-95 351.7 256 73.8
Duzib106G0320 Durio zibethinus HOM05D004764 ORTHO05D005580 8.6e-95 350.9 256 73.8
GSVIVG01016388001 Vitis vinifera HOM05D004764 ORTHO05D005580 8.6e-95 350.9 256 73.8
Cpa.g.sc19.234 Carica papaya HOM05D004764 ORTHO05D005580 1.1e-94 350.5 256 73.4
CANSAT21G1253 Cannabis sativa HOM05D004764 ORTHO05D005580 1.9e-94 349.7 256 72.3
CiPaw.10G131000 Carya illinoinensis HOM05D004764 ORTHO05D005580 3.3e-94 349.0 256 73.0
COL.COLO4_25609 Corchorus olitorius HOM05D004764 ORTHO05D005580 7.2e-94 347.8 256 73.8
TAR623G1788 Trochodendron aralioides HOM05D004764 ORTHO05D005580 1.2e-93 347.1 256 72.3
Cc02_g20660 Coffea canephora HOM05D004764 ORTHO05D005580 1.6e-93 346.7 256 71.5
Lj2g0017902 Lotus japonicus HOM05D004764 ORTHO05D005580 1.6e-93 346.7 256 72.7
Sc11g0007530 Simmondsia chinensis HOM05D004764 ORTHO05D005580 2.1e-93 346.3 256 71.9
SalBow6G7043 Salvia bowleyana HOM05D004764 ORTHO05D005580 4.7e-93 345.1 256 71.9
Lsat_1_v5_gn_8_14200 Lactuca sativa HOM05D004764 ORTHO05D005580 6.1e-93 344.7 256 71.5
Thecc.10G137500 Theobroma cacao HOM05D004764 ORTHO05D005580 1.0e-92 344.0 256 73.4
TAR369G1012 Trochodendron aralioides HOM05D004764 ORTHO05D005580 1.8e-92 343.2 256 71.5
Ca_25497_v3 Cicer arietinum L. HOM05D004764 ORTHO05D005580 3.0e-92 342.4 256 71.5
RcHm_v2.0_Chr1g0351821 Rosa chinensis HOM05D004764 ORTHO05D005580 3.0e-92 342.4 261 69.7
Glyma.09G184900 Glycine max HOM05D004764 ORTHO05D005580 4.0e-92 342.0 256 71.1
FAN10G3109 Fragaria x ananassa HOM05D004764 ORTHO05D005580 5.2e-92 341.7 261 69.0
FAN10G1216 Fragaria x ananassa HOM05D004764 ORTHO05D005580 8.9e-92 340.9 261 69.0
Hund16007 Selenicereus undatus HOM05D004764 ORTHO05D005580 1.2e-91 340.5 256 71.9
Medtr6g084580 Medicago truncatula HOM05D004764 ORTHO05D005580 1.5e-91 340.1 256 71.1
Peaxi162Scf00064g00126 Petunia axillaris HOM05D004764 ORTHO05D005580 1.5e-91 340.1 256 71.1
Phvul.004G157700 Phaseolus vulgaris HOM05D004764 ORTHO05D005580 2.6e-91 339.3 256 70.3
VMungo0464G2049 Vigna mungo HOM05D004764 ORTHO05D005580 2.6e-91 339.3 256 71.1
FvH4_7g12790 Fragaria vesca HOM05D004764 ORTHO05D005580 3.4e-91 339.0 261 69.0
Peaxi162Scf00010g01114 Petunia axillaris HOM05D004764 ORTHO05D005580 1.3e-90 337.0 256 70.7
Psat1g037840 Pisum sativum HOM05D004764 ORTHO05D005580 1.3e-90 337.0 256 70.3
THA.LOC104816565 Tarenaya hassleriana HOM05D004764 ORTHO05D005580 1.3e-90 337.0 256 69.5
Sed0006926 Sechium edule HOM05D004764 ORTHO05D005580 2.8e-90 335.9 257 70.0
MELO3C008270.2 Cucumis melo HOM05D004764 ORTHO05D005580 8.3e-90 334.3 256 69.1
Lj1g0004796 Lotus japonicus HOM05D004764 ORTHO05D005580 1.1e-89 334.0 256 71.1
PGR142G0534 Punica granatum HOM05D004764 ORTHO05D005580 1.8e-89 333.2 256 69.9
EL10Ac2g04766 Beta vulgaris HOM05D004764 ORTHO05D005580 4.5e-88 328.6 256 68.8
Aqoxy1G00756 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 1.7e-87 326.6 258 69.4
Thhalv10011542m.g Eutrema salsugineum HOM05D004764 ORTHO05D005580 2.9e-87 325.9 256 67.2
Lsat_1_v5_gn_9_12660 Lactuca sativa HOM05D004764 ORTHO05D005580 1.1e-86 323.9 258 68.6
Lalb_Chr14g0371191 Lupinus albus HOM05D004764 ORTHO05D005580 1.1e-86 323.9 256 67.6
Sp1g38390 Schrenkiella parvula HOM05D004764 ORTHO05D005580 1.1e-86 323.9 256 66.8
Aqoxy7G01280 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 1.9e-86 323.2 258 67.8
ClCG11G006420 Citrullus lanatus HOM05D004764 ORTHO05D005580 2.5e-86 322.8 256 67.6
Ah.16g104720 Amaranthus hybridus HOM05D004764 ORTHO05D005580 4.3e-86 322.0 256 66.0
AUR62032348 Chenopodium quinoa HOM05D004764 ORTHO05D005580 4.3e-86 322.0 256 66.0
FAN01G0026 Fragaria x ananassa HOM05D004764 ORTHO05D005580 5.6e-86 321.6 296 60.5
C06p07040 Brassica napus HOM05D004764 ORTHO05D005580 9.5e-86 320.9 257 66.1
BolC6t35797H Brassica oleracea HOM05D004764 ORTHO05D005580 9.5e-86 320.9 257 66.1
A06p02240 Brassica napus HOM05D004764 ORTHO05D005580 1.6e-85 320.1 257 66.1
AL1G59680 Arabidopsis lyrata HOM05D004764 ORTHO05D005580 2.8e-85 319.3 257 66.1
BcaC08g43344 Brassica carinata HOM05D004764 ORTHO05D005580 3.6e-85 318.9 257 65.8
BraA06t23434Z Brassica rapa HOM05D004764 ORTHO05D005580 4.7e-85 318.5 257 65.8
CARHR041910 Cardamine hirsuta HOM05D004764 ORTHO05D005580 4.7e-85 318.5 256 65.6
Aa31LG10G3070 Aethionema arabicum HOM05D004764 ORTHO05D005580 6.1e-85 318.2 256 66.0
PSO585G0029 Papaver somniferum HOM05D004764 ORTHO05D005580 6.1e-85 318.2 258 67.1
arahy.Tifrunner.gnm1.ann1.BR1H5V Arachis hypogaea HOM05D004764 ORTHO05D005580 1.0e-84 317.4 256 66.0
Lalb_Chr22g0353041 Lupinus albus HOM05D004764 ORTHO05D005580 1.4e-84 317.0 256 67.2
Ah.02g115950 Amaranthus hybridus HOM05D004764 ORTHO05D005580 1.8e-84 316.6 256 65.2
Eucgr.G03020 Eucalyptus grandis HOM05D004764 ORTHO05D005580 6.8e-84 314.7 256 67.6
BcaB07g33630 Brassica carinata HOM05D004764 ORTHO05D005580 2.6e-83 312.8 257 65.0
AT1G51740 Arabidopsis thaliana HOM05D004764 ORTHO05D005580 3.4e-83 312.4 257 65.4
BcaB02g11053 Brassica carinata HOM05D004764 ORTHO05D005580 5.8e-83 311.6 258 64.0
PSO384G2817 Papaver somniferum HOM05D004764 ORTHO05D005580 9.8e-83 310.8 258 66.7
Carub.0001s4061 Capsella rubella HOM05D004764 ORTHO05D005580 2.9e-82 309.3 258 65.1
Solyc03g033850.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 1.4e-81 307.0 219 72.6
unitig_0.g2163 Utricularia gibba HOM05D004764 ORTHO05D005580 1.9e-81 306.6 265 63.8
Gohir.D10G242400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 2.4e-81 306.2 224 73.7
arahy.Tifrunner.gnm1.ann1.V0Z2W7 Arachis hypogaea HOM05D004764 ORTHO05D005580 4.1e-81 305.4 256 64.5
Actinidia00927 Actinidia chinensis HOM05D004764 ORTHO05D005580 2.0e-80 303.1 257 66.9
CsaV3_6G001590 Cucumis sativus L. HOM05D004764 ORTHO05D005580 7.8e-80 301.2 237 68.4
ATR0736G027 Amborella trichopoda HOM05D004764 ORTHO05D005580 1.0e-79 300.8 259 64.9
Zm00001eb429110 Zea mays HOM05D004764 ORTHO05D005580 1.0e-79 300.8 258 63.2
Os12g0154400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 2.5e-78 296.2 257 62.3
Os04g0530400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 4.3e-78 295.4 257 62.3
Potri.008G063100 Populus trichocarpa HOM05D004764 ORTHO05D005580 5.6e-78 295.0 228 69.7
FAN06G0806 Fragaria x ananassa HOM05D004764 ORTHO05D005580 3.9e-71 272.3 207 70.0
AUR62041843 Chenopodium quinoa HOM05D004764 ORTHO05D005580 1.5e-70 270.4 256 58.6
SEGI_31890 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 2.8e-69 266.2 258 58.1
Glyma.07G091000 Glycine max HOM05D004764 ORTHO05D005580 3.2e-65 252.7 256 58.2
Nn5g27977 Nelumbo nucifera HOM05D004764 ORTHO05D005580 1.6e-64 250.4 256 59.8
SHI03532 Sapria himalayana HOM05D004764 ORTHO05D005580 3.0e-63 246.1 257 56.8
Nitab4.5_0011923g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 6.8e-60 235.0 256 52.7
vmacro10073 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 1.5e-59 233.8 168 73.8
HPP92_027811 Vanilla planifolia HOM05D004764 ORTHO05D005580 4.6e-56 222.2 258 50.0
Nitab4.5_0002828g0150 Nicotiana tabacum HOM05D004764 ORTHO05D005580 4.0e-52 209.1 291 47.4
TPR.G27934 Trifolium pratense HOM05D004764 ORTHO05D005580 1.7e-50 203.8 211 53.1
Mapoly0024s0083 Marchantia polymorpha HOM05D004764 ORTHO05D005580 8.4e-50 201.4 260 46.5
Pp3c6_24680 Physcomitrium patens HOM05D004764 ORTHO05D005580 3.9e-47 192.6 261 43.3
SMO356G0668 Selaginella moellendorffii HOM05D004764 ORTHO05D005580 6.9e-44 181.8 265 43.4
Actinidia27825 Actinidia chinensis HOM05D004764 ORTHO05D005580 3.0e-39 166.4 123 77.2
AagrBONN_evm.TU.Sc2ySwM_368.928 Anthoceros agrestis HOM05D004764 ORTHO05D005580 5.1e-39 165.6 239 42.7
HPP92_004405 Vanilla planifolia HOM05D004764 ORTHO05D005580 4.8e-37 159.1 121 64.5
PSO339G3467 Papaver somniferum HOM05D004764 ORTHO05D005580 3.2e-33 146.4 133 63.2
Oeu032670.1 Olea europaea HOM05D004764 ORTHO05D005580 1.6e-32 144.1 119 71.4
C06p13300 Brassica napus HOM05D001194 ORTHO05D005580 4.6e-32 142.5 222 46.4
vmacro10074 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 9.6e-30 134.8 110 66.4
Eucgr.L03566 Eucalyptus grandis HOM05D004764 ORTHO05D005580 2.1e-29 133.7 91 73.6
Sabra08G0046500 Salix brachista HOM05D004764 ORTHO05D005580 1.4e-28 131.0 231 39.0
CDE09G0086 Ceratophyllum demersum HOM05D004764 ORTHO05D005580 6.5e-26 122.1 130 55.4
SEGI_41058 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 1.1e-22 111.3 89 64.0
BcaC08g43936 Brassica carinata HOM05D004764 ORTHO05D005580 2.5e-22 110.2 99 59.6
BcaC08g43937 Brassica carinata HOM05D001194 ORTHO05D004786 2.8e-21 106.7 122 58.2
MCO05G144 Micromonas commoda HOM05D004764 ORTHO05D005580 3.7e-21 106.3 257 31.1
Actinidia13909 Actinidia chinensis HOM05D004764 ORTHO05D005580 2.6e-19 100.1 74 77.0
Actinidia13908 Actinidia chinensis HOM05D004764 ORTHO05D005580 1.1e-17 94.7 58 81.0
BolC6t36490H Brassica oleracea HOM05D001194 ORTHO05D000015 2.5e-17 93.6 221 35.3
Zm00001eb427200 Zea mays HOM05D004764 ORTHO05D005580 3.2e-17 93.2 99 59.6
PGSC0003DMG400022548 Solanum tuberosum HOM05D004764 ORTHO05D005580 5.1e-15 85.9 59 79.7
Glyma.17G199500 Glycine max HOM05D004764 ORTHO05D005580 6.3e-13 79.0 58 75.9
vmacro10891 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 8.2e-13 78.6 71 67.6
Sc11g0007520 Simmondsia chinensis HOM05D004764 ORTHO05D005580 1.3e-10 71.2 92 50.0
PRCOL_00004763 Prasinoderma coloniale HOM05D001748 ORTHO05D001759 1.9e-09 67.4 158 34.2
Cre17.g711450 Chlamydomonas reinhardtii HOM05D004764 ORTHO05D005580 7.9e-08 62.0 181 29.3
HanXRQChr16g0528961 Helianthus annuus HOM05D004764 ORTHO05D005580 1.1e-06 58.2 90 41.1


User provided reference genes

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