Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1C32T8 Lonicera japonica HOM05D004153 ORTHO05D004678 1.0e-70 270.0 138 100.0
Lj1C0T8 Lonicera japonica HOM05D004153 ORTHO05D004678 2.2e-46 189.1 163 66.3
Potri.002G206100 Populus trichocarpa HOM05D004153 ORTHO05D004678 1.8e-24 116.3 195 40.5
Peaxi162Scf00067g00254 Petunia axillaris HOM05D004153 ORTHO05D004678 9.2e-24 114.0 188 40.4
COL.COLO4_23373 Corchorus olitorius HOM05D004153 ORTHO05D004678 1.2e-23 113.6 191 39.8
Gorai.008G011200 Gossypium raimondii HOM05D004153 ORTHO05D004678 7.8e-23 110.9 188 39.9
Gohir.D12G011200 Gossypium hirsutum HOM05D004153 ORTHO05D004678 1.3e-22 110.2 188 39.9
Migut.D00197 Erythranthe guttata HOM05D004153 ORTHO05D004678 1.7e-22 109.8 195 39.0
Manes.04G056100 Manihot esculenta HOM05D004153 ORTHO05D004678 1.7e-22 109.8 163 42.3
Gohir.A12G010800 Gossypium hirsutum HOM05D004153 ORTHO05D004678 2.9e-22 109.0 188 39.9
Hma1.2p1_0209F.1_g088580 Hydrangea macrophylla HOM05D004153 ORTHO05D004678 2.9e-22 109.0 155 43.9
Potri.014G131400 Populus trichocarpa HOM05D004153 ORTHO05D004678 1.1e-21 107.1 187 39.0
Cc01_g20660 Coffea canephora HOM05D004153 ORTHO05D004678 3.3e-21 105.5 189 39.2
Duzib138G0244 Durio zibethinus HOM05D004153 ORTHO05D004678 1.2e-20 103.6 196 38.3
Sopen09g029730 Solanum pennellii HOM05D004153 ORTHO05D004678 1.2e-20 103.6 198 38.4
Sabra02G0153200 Salix brachista HOM05D004153 ORTHO05D004678 1.6e-20 103.2 195 37.4
CANSAT01G1893 Cannabis sativa HOM05D004153 ORTHO05D004678 2.1e-20 102.8 186 39.2
Aqoxy2G02983 Aquilegia oxysepala HOM05D004153 ORTHO05D004678 2.8e-20 102.4 188 36.7
Manes.05G063900 Manihot esculenta HOM05D004153 ORTHO05D004678 2.8e-20 102.4 190 37.9
Solyc09g074910.1 Solanum lycopersicum HOM05D004153 ORTHO05D004678 2.8e-20 102.4 198 37.9
Nitab4.5_0003901g0020 Nicotiana tabacum HOM05D004153 ORTHO05D004678 6.1e-20 101.3 196 39.8
QL12p027168 Quercus lobata HOM05D004153 ORTHO05D004678 8.0e-20 100.9 189 37.6
DCAR_002817 Daucus carota HOM05D004153 ORTHO05D004678 1.0e-19 100.5 158 41.8
Atru.chr5.1180 Acer truncatum HOM05D004153 ORTHO05D004678 2.3e-19 99.4 164 38.4
Lj1g0005892 Lotus japonicus HOM05D004153 ORTHO05D004678 2.3e-19 99.4 163 39.9
Nitab4.5_0000619g0070 Nicotiana tabacum HOM05D004153 ORTHO05D004678 3.1e-19 99.0 193 39.4
PGSC0003DMG400035200 Solanum tuberosum HOM05D004153 ORTHO05D004678 3.1e-19 99.0 203 37.4
Lsat_1_v5_gn_5_190540 Lactuca sativa HOM05D004153 ORTHO05D004678 8.9e-19 97.4 160 37.5
Lalb_Chr15g0078571 Lupinus albus HOM05D004153 ORTHO05D004678 8.9e-19 97.4 168 41.1
Oeu030970.1 Olea europaea HOM05D004153 ORTHO05D004678 8.9e-19 97.4 195 39.5
FAN15G0276 Fragaria x ananassa HOM05D004153 ORTHO05D004678 1.5e-18 96.7 189 38.6
Glyma.03G213300 Glycine max HOM05D004153 ORTHO05D004678 2.0e-18 96.3 190 37.9
CANSAT78G0904 Cannabis sativa HOM05D004153 ORTHO05D004678 2.6e-18 95.9 175 38.9
TWI23G0022 Tripterygium wilfordii HOM05D004153 ORTHO05D004678 3.4e-18 95.5 170 37.1
CiPaw.07G106600 Carya illinoinensis HOM05D004153 ORTHO05D004678 4.4e-18 95.1 186 34.4
SalBow3G0249 Salvia bowleyana HOM05D004153 ORTHO05D004678 7.5e-18 94.4 165 38.2
TAR365G1014 Trochodendron aralioides HOM05D004153 ORTHO05D004678 1.7e-17 93.2 141 40.4
Ciclev10007035m.g Citrus clementina HOM05D004153 ORTHO05D004678 2.9e-17 92.4 167 35.3
HanXRQChr10g0284631 Helianthus annuus HOM05D004153 ORTHO05D004678 2.9e-17 92.4 161 35.4
Lj3P816T18 Lonicera japonica HOM05D004153 ORTHO05D004678 2.9e-17 92.4 155 36.8
CAN.G339.31 Capsicum annuum HOM05D004153 ORTHO05D004678 3.7e-17 92.0 194 36.1
Lsat_1_v5_gn_9_1141 Lactuca sativa HOM05D004153 ORTHO05D004678 3.7e-17 92.0 169 33.1
RcHm_v2.0_Chr6g0293581 Rosa chinensis HOM05D004153 ORTHO05D004678 6.4e-17 91.3 193 37.8
FvH4_2g25400 Fragaria vesca HOM05D004153 ORTHO05D004678 1.4e-16 90.1 187 38.0
FAN24G2766 Fragaria x ananassa HOM05D004153 ORTHO05D004678 1.4e-16 90.1 187 38.0
Atru.chr4.2837 Acer truncatum HOM05D004153 ORTHO05D004678 2.4e-16 89.4 173 35.8
ECA248G0131 Erigeron canadensis HOM05D004153 ORTHO05D004678 2.4e-16 89.4 103 50.5
Psat3g022920 Pisum sativum HOM05D004153 ORTHO05D004678 2.4e-16 89.4 172 39.0
Ciclev10022120m.g Citrus clementina HOM05D004153 ORTHO05D004678 3.2e-16 89.0 194 34.5
VMungo1383G3271 Vigna mungo HOM05D004153 ORTHO05D004678 4.1e-16 88.6 188 36.2
PSO017G2667 Papaver somniferum HOM05D004153 ORTHO05D004678 7.0e-16 87.8 191 31.4
Dinv19716 Davidia involucrata HOM05D004153 ORTHO05D004678 9.2e-16 87.4 151 41.7
FAN15G2246 Fragaria x ananassa HOM05D000802 ORTHO05D001074 1.2e-15 87.0 188 37.2
SGA_v2.0_scaffold2G01404 Striga asiatica HOM05D004153 ORTHO05D004678 1.2e-15 87.0 187 35.3
HanXRQChr01g0001291 Helianthus annuus HOM05D004153 ORTHO05D004678 1.6e-15 86.7 104 50.0
PGR119G1654 Punica granatum HOM05D004153 ORTHO05D004678 1.6e-15 86.7 192 35.4
PGR119G2063 Punica granatum HOM05D004153 ORTHO05D004678 1.6e-15 86.7 192 35.4
unitig_0.g1178 Utricularia gibba HOM05D004153 ORTHO05D004678 1.6e-15 86.7 185 33.0
Lalb_Chr18g0051691 Lupinus albus HOM05D004153 ORTHO05D004678 2.0e-15 86.3 153 35.9
Phvul.001G205900 Phaseolus vulgaris HOM05D004153 ORTHO05D004678 2.0e-15 86.3 188 35.1
Haze_04898 Corylus avellana HOM05D004153 ORTHO05D004678 2.7e-15 85.9 191 37.2
PSO675G8366 Papaver somniferum HOM05D004153 ORTHO05D004678 3.5e-15 85.5 191 31.4
Glyma.09G044900 Glycine max HOM05D004153 ORTHO05D004678 6.0e-15 84.7 157 35.0
FAN20G2301 Fragaria x ananassa HOM05D004153 ORTHO05D004678 7.8e-15 84.3 188 37.8
MD03G1285300 Malus domestica HOM05D004153 ORTHO05D004678 7.8e-15 84.3 193 34.7
Carub.0004s3048 Capsella rubella HOM05D004153 ORTHO05D004678 1.3e-14 83.6 173 34.1
Medtr7g108650 Medicago truncatula HOM05D004153 ORTHO05D004678 1.3e-14 83.6 200 36.0
Thecc.04G284700 Theobroma cacao HOM05D004153 ORTHO05D004678 1.3e-14 83.6 179 34.1
Psat1g153880 Pisum sativum HOM05D004153 ORTHO05D004678 2.3e-14 82.8 157 35.7
AL4G47340 Arabidopsis lyrata HOM05D004153 ORTHO05D004678 3.9e-14 82.0 162 32.7
Thecc.01G297300 Theobroma cacao HOM05D004153 ORTHO05D004678 6.6e-14 81.3 197 33.5
Lj3P819T20 Lonicera japonica HOM05D004153 ORTHO05D004678 8.6e-14 80.9 142 35.2
Nn5g27910 Nelumbo nucifera HOM05D004153 ORTHO05D004678 8.6e-14 80.9 184 32.6
Glyma.15G147800 Glycine max HOM05D004153 ORTHO05D004678 1.1e-13 80.5 157 33.1
THA.LOC104802169 Tarenaya hassleriana HOM05D004153 ORTHO05D004678 1.5e-13 80.1 180 35.0
TPR.G13834 Trifolium pratense HOM05D004153 ORTHO05D004678 1.5e-13 80.1 171 33.9
AT2G47770 Arabidopsis thaliana HOM05D004153 ORTHO05D004678 1.9e-13 79.7 173 32.4
arahy.Tifrunner.gnm1.ann1.3INE6D Arachis hypogaea HOM05D004153 ORTHO05D004678 1.9e-13 79.7 148 38.5
VMungo1309G0390 Vigna mungo HOM05D004153 ORTHO05D004678 1.9e-13 79.7 157 35.0
ClCG09G006030 Citrullus lanatus HOM05D004153 ORTHO05D004678 3.3e-13 79.0 193 32.1
Nn4g25841 Nelumbo nucifera HOM05D004153 ORTHO05D004678 3.3e-13 79.0 186 32.8
Phvul.009G248000 Phaseolus vulgaris HOM05D004153 ORTHO05D004678 3.3e-13 79.0 157 35.7
FAN27G1399 Fragaria x ananassa HOM05D004153 ORTHO05D004678 4.3e-13 78.6 185 35.1
RcHm_v2.0_Chr4g0422241 Rosa chinensis HOM05D004153 ORTHO05D004678 4.3e-13 78.6 195 32.3
TWI53G1241 Tripterygium wilfordii HOM05D004153 ORTHO05D004678 4.3e-13 78.6 155 33.5
Cfa005949 Carpinus fangiana HOM05D004153 ORTHO05D004678 7.3e-13 77.8 130 36.9
Eucgr.B01312 Eucalyptus grandis HOM05D004153 ORTHO05D004678 1.2e-12 77.0 163 30.7
Haze_01203 Corylus avellana HOM05D004153 ORTHO05D004678 2.1e-12 76.3 164 32.3
Lalb_Chr18g0047121 Lupinus albus HOM05D004153 ORTHO05D004678 3.6e-12 75.5 201 33.8
Lj6g0000547 Lotus japonicus HOM05D004153 ORTHO05D004678 4.7e-12 75.1 163 31.9
CARHR143140 Cardamine hirsuta HOM05D004153 ORTHO05D004678 6.2e-12 74.7 192 30.2
Duzib052G0234 Durio zibethinus HOM05D004153 ORTHO05D004678 6.2e-12 74.7 191 31.9
Sed0026977 Sechium edule HOM05D004153 ORTHO05D004678 6.2e-12 74.7 196 33.2
EL10Ac6g15659 Beta vulgaris HOM05D004153 ORTHO05D004678 8.1e-12 74.3 160 31.9
Cpa.g.sc9.210 Carica papaya HOM05D004153 ORTHO05D004678 1.1e-11 73.9 203 29.6
Aa31LG1G29110 Aethionema arabicum HOM05D004153 ORTHO05D004678 1.4e-11 73.6 176 31.2
EL10Ac3g06596 Beta vulgaris HOM05D004153 ORTHO05D004678 4.0e-11 72.0 163 30.1
MBI18_g21824_MAGBIO Magnolia biondii HOM05D004153 ORTHO05D004678 4.0e-11 72.0 186 33.3
Prupe.8G258500 Prunus persica HOM05D004153 ORTHO05D004678 4.0e-11 72.0 99 45.5
CSS0027100 Camellia sinensis var. sinensis HOM05D004153 ORTHO05D004678 6.8e-11 71.2 184 31.0
MELO3C006663.2 Cucumis melo HOM05D004153 ORTHO05D004678 8.9e-11 70.9 170 31.2
Ah.08g213200 Amaranthus hybridus HOM05D004153 ORTHO05D004678 2.0e-10 69.7 177 28.2
CsaV3_3G014620 Cucumis sativus L. HOM05D004153 ORTHO05D004678 3.4e-10 68.9 165 29.7
Sed0018454 Sechium edule HOM05D004153 ORTHO05D004678 4.4e-10 68.6 167 30.5
Gorai.011G190200 Gossypium raimondii HOM05D004153 ORTHO05D004678 5.8e-10 68.2 191 29.3
PGR031G1230 Punica granatum HOM05D004153 ORTHO05D004678 5.8e-10 68.2 153 30.7
A04p35060 Brassica napus HOM05D004153 ORTHO05D004678 7.5e-10 67.8 191 28.8
BraA04t18942Z Brassica rapa HOM05D004153 ORTHO05D004678 7.5e-10 67.8 191 29.3
BcaC02g06991 Brassica carinata HOM05D004153 ORTHO05D004678 9.8e-10 67.4 193 29.0
BolC4t28778H Brassica oleracea HOM05D004153 ORTHO05D004678 1.3e-09 67.0 191 28.8
Gohir.D10G170400 Gossypium hirsutum HOM05D004153 ORTHO05D004678 1.3e-09 67.0 191 29.3
BcaB06g29496 Brassica carinata HOM05D004153 ORTHO05D004678 2.9e-09 65.9 151 31.1
C04p72970 Brassica napus HOM05D004153 ORTHO05D004678 2.9e-09 65.9 193 28.5
AUR62008617 Chenopodium quinoa HOM05D004153 ORTHO05D004678 3.7e-09 65.5 183 26.8
AUR62033157 Chenopodium quinoa HOM05D004153 ORTHO05D004678 3.7e-09 65.5 183 26.2
AUR62033169 Chenopodium quinoa HOM05D004153 ORTHO05D004678 3.7e-09 65.5 183 26.2
Gohir.A10G164100 Gossypium hirsutum HOM05D004153 ORTHO05D004678 3.7e-09 65.5 191 28.8
Thhalv10001647m.g Eutrema salsugineum HOM05D004153 ORTHO05D004678 4.9e-09 65.1 189 28.0
BcaB06g29494 Brassica carinata HOM05D004153 ORTHO05D004678 6.4e-09 64.7 163 30.7
BcaB06g29497 Brassica carinata HOM05D004153 ORTHO05D004678 6.4e-09 64.7 163 30.7
Actinidia21057 Actinidia chinensis HOM05D004153 ORTHO05D004678 1.1e-08 63.9 104 47.1
BcaC02g12543 Brassica carinata HOM05D004153 ORTHO05D004678 1.4e-08 63.5 169 29.6
Medtr2g436790 Medicago truncatula HOM05D004153 ORTHO05D004678 1.4e-08 63.5 157 30.6
Ca_01937_v3 Cicer arietinum L. HOM05D000639 ORTHO05D004019 2.4e-08 62.8 66 48.5
Potri.010G025200 Populus trichocarpa HOM05D004153 ORTHO05D004678 2.4e-08 62.8 164 31.1
Sp4g29700 Schrenkiella parvula HOM05D004153 ORTHO05D004678 2.4e-08 62.8 163 30.1
BcaB01g03159 Brassica carinata HOM05D004153 ORTHO05D004678 4.1e-08 62.0 118 33.1
ATR0796G004 Amborella trichopoda HOM05D004153 ORTHO05D004678 5.4e-08 61.6 176 27.8
BolC4t21658H Brassica oleracea HOM05D004153 ORTHO05D004678 5.4e-08 61.6 169 29.0
Prupe.1G136800 Prunus persica HOM05D004153 ORTHO05D004678 5.4e-08 61.6 183 28.4
MELO3C016017.2 Cucumis melo HOM05D004153 ORTHO05D004678 1.2e-07 60.5 194 29.9
HPP92_016940 Vanilla planifolia HOM05D004153 ORTHO05D004678 1.2e-07 60.5 180 29.4
C04p00110 Brassica napus HOM05D004153 ORTHO05D004678 1.6e-07 60.1 169 29.0
FAN07G0961 Fragaria x ananassa HOM05D004153 ORTHO05D004678 3.5e-07 58.9 176 30.7
Sed0010104 Sechium edule HOM05D004153 ORTHO05D004678 1.0e-06 57.4 170 28.2
TWI73G1192 Tripterygium wilfordii HOM05D004153 ORTHO05D004678 1.3e-06 57.0 64 42.2
Rhsim04G0221600 Rhododendron simsii HOM05D004153 ORTHO05D004678 1.7e-06 56.6 157 32.5
Manes.03G195100 Manihot esculenta HOM05D004153 ORTHO05D004678 3.9e-06 55.5 146 30.1


User provided reference genes

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