Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1C312T0 Lonicera japonica HOM05D001401 ORTHO05D006368 2.9e-73 278.5 141 100.0
Lj9P365T45 Lonicera japonica HOM05D001401 ORTHO05D006368 3.5e-55 218.4 125 90.4
CSS0017552 Camellia sinensis var. sinensis HOM05D001401 ORTHO05D006368 1.4e-32 143.3 133 59.4
Dinv42099 Davidia involucrata HOM05D001401 ORTHO05D006368 9.3e-32 140.6 132 61.4
Rhsim11G0172600 Rhododendron simsii HOM05D000554 ORTHO05D002829 1.2e-31 140.2 125 61.6
Dinv23564 Davidia involucrata HOM05D001401 ORTHO05D006368 3.6e-31 138.7 131 60.3
vmacro02151 Vaccinium macrocarpon HOM05D001401 ORTHO05D006368 7.9e-31 137.5 125 60.0
Hma1.2p1_0584F.1_g183440 Hydrangea macrophylla HOM05D001401 ORTHO05D006368 8.7e-30 134.0 124 61.3
DCAR_029001 Daucus carota HOM05D001401 ORTHO05D006368 1.4e-27 126.7 133 55.6
MSTRG.5386 Avicennia marina HOM05D001401 ORTHO05D006368 2.0e-26 122.9 135 54.1
Nitab4.5_0003816g0020 Nicotiana tabacum HOM05D001401 ORTHO05D006368 4.5e-26 121.7 134 53.0
TAR381G0019 Trochodendron aralioides HOM05D001401 ORTHO05D006368 4.5e-26 121.7 132 53.8
Nitab4.5_0004280g0010 Nicotiana tabacum HOM05D001401 ORTHO05D006368 1.0e-25 120.6 131 55.0
Cc02_g18020 Coffea canephora HOM05D001401 ORTHO05D006368 1.3e-25 120.2 133 54.1
TAR628G1386 Trochodendron aralioides HOM05D001401 ORTHO05D006368 1.7e-25 119.8 132 55.3
Peaxi162Scf00016g01140 Petunia axillaris HOM05D001401 ORTHO05D006368 3.8e-25 118.6 134 51.5
SalBow6G2648 Salvia bowleyana HOM05D001401 ORTHO05D006368 1.1e-24 117.1 120 55.8
Solyc01g109260.3 Solanum lycopersicum HOM05D001401 ORTHO05D006368 1.4e-24 116.7 134 47.8
Sopen01g051420 Solanum pennellii HOM05D001401 ORTHO05D006368 1.4e-24 116.7 134 47.8
PGSC0003DMG400025176 Solanum tuberosum HOM05D001401 ORTHO05D006368 1.9e-24 116.3 134 47.8
Potri.009G111000 Populus trichocarpa HOM05D001401 ORTHO05D006368 4.2e-24 115.2 127 54.3
Actinidia27915 Actinidia chinensis HOM05D001401 ORTHO05D006368 1.2e-23 113.6 132 56.8
ECA234G2696 Erigeron canadensis HOM05D000324 ORTHO05D001014 1.2e-23 113.6 125 49.6
Actinidia00491 Actinidia chinensis HOM05D001401 ORTHO05D006368 6.1e-23 111.3 122 52.5
Oeu034083.1 Olea europaea HOM05D001401 ORTHO05D006368 6.1e-23 111.3 136 50.7
CAN.G322.101 Capsicum annuum HOM05D001401 ORTHO05D006368 1.8e-22 109.8 134 47.8
Nn5g29458 Nelumbo nucifera HOM05D001401 ORTHO05D006368 1.8e-22 109.8 128 50.8
Sabra09G0084600 Salix brachista HOM05D001401 ORTHO05D006368 5.1e-22 108.2 127 52.8
Aqoxy6G00969 Aquilegia oxysepala HOM05D001401 ORTHO05D006368 2.6e-21 105.9 129 48.1
Manes.15G147100 Manihot esculenta HOM05D001401 ORTHO05D006368 2.6e-21 105.9 128 48.4
QL11p037824 Quercus lobata HOM05D001401 ORTHO05D006368 2.6e-21 105.9 134 48.5
QL11p040047 Quercus lobata HOM05D001401 ORTHO05D006368 2.6e-21 105.9 134 48.5
Migut.N01216 Erythranthe guttata HOM05D001401 ORTHO05D006368 3.3e-21 105.5 126 52.4
TWI31G0569 Tripterygium wilfordii HOM05D001401 ORTHO05D002222 3.3e-21 105.5 131 48.9
Oeu027593.1 Olea europaea HOM05D001574 ORTHO05D006368 5.7e-21 104.8 126 46.8
Potri.004G149900 Populus trichocarpa HOM05D001401 ORTHO05D006368 2.2e-20 102.8 128 51.6
MSTRG.20113 Avicennia marina HOM05D001401 ORTHO05D006368 2.8e-20 102.4 134 49.3
Thecc.02G031200 Theobroma cacao HOM05D001401 ORTHO05D006368 2.8e-20 102.4 132 50.0
Ciclev10028944m.g Citrus clementina HOM05D001401 ORTHO05D006368 3.7e-20 102.1 132 47.0
TWI75G1696 Tripterygium wilfordii HOM05D001401 ORTHO05D006368 4.8e-20 101.7 127 47.2
CiPaw.05G060100 Carya illinoinensis HOM05D001401 ORTHO05D006368 6.3e-20 101.3 135 46.7
CANSAT25G1485 Cannabis sativa HOM05D001401 ORTHO05D006368 2.4e-19 99.4 122 48.4
Cfa021516 Carpinus fangiana HOM05D001401 ORTHO05D006368 2.4e-19 99.4 132 47.0
Cfa021524 Carpinus fangiana HOM05D001401 ORTHO05D002222 2.4e-19 99.4 132 47.0
Lsat_1_v5_gn_5_118161 Lactuca sativa HOM05D001401 ORTHO05D006368 2.4e-19 99.4 125 48.8
Prupe.8G107000 Prunus persica HOM05D001401 ORTHO05D006368 4.1e-19 98.6 130 46.9
Sabra04G0099700 Salix brachista HOM05D001401 ORTHO05D006368 4.1e-19 98.6 128 51.6
Haze_02430 Corylus avellana HOM05D001401 ORTHO05D006368 5.3e-19 98.2 132 47.0
Duzib132G0928 Durio zibethinus HOM05D001401 ORTHO05D006368 5.3e-19 98.2 130 47.7
Medtr4g068880 Medicago truncatula HOM05D001401 ORTHO05D006368 5.3e-19 98.2 122 50.0
RcHm_v2.0_Chr6g0262181 Rosa chinensis HOM05D001401 ORTHO05D006368 5.3e-19 98.2 129 45.7
TWI79G1069 Tripterygium wilfordii HOM05D001401 ORTHO05D002222 5.3e-19 98.2 128 45.3
Duzib248G1632 Durio zibethinus HOM05D001401 ORTHO05D006368 1.5e-18 96.7 121 47.9
FAN20G2914 Fragaria x ananassa HOM05D001401 ORTHO05D006368 2.0e-18 96.3 129 48.1
Lj3g0025450 Lotus japonicus HOM05D001401 ORTHO05D006368 2.0e-18 96.3 131 45.8
COL.COLO4_17797 Corchorus olitorius HOM05D000370 ORTHO05D001335 2.6e-18 95.9 128 46.9
FvH4_2g07780 Fragaria vesca HOM05D001401 ORTHO05D006368 3.4e-18 95.5 129 47.3
FAN15G1840 Fragaria x ananassa HOM05D001401 ORTHO05D006368 3.4e-18 95.5 129 47.3
FAN24G0528 Fragaria x ananassa HOM05D001401 ORTHO05D006368 3.4e-18 95.5 129 47.3
PSO700G0268 Papaver somniferum HOM05D001401 ORTHO05D006368 3.4e-18 95.5 125 46.4
Lalb_Chr01g0002831 Lupinus albus HOM05D001401 ORTHO05D006368 5.9e-18 94.7 133 45.9
Medtr0026s0200 Medicago truncatula HOM05D001401 ORTHO05D006368 5.9e-18 94.7 122 49.2
PSO170G2675 Papaver somniferum HOM05D001401 ORTHO05D006368 7.7e-18 94.4 125 45.6
EL10Ac9g21774 Beta vulgaris HOM05D001401 ORTHO05D002222 1.3e-17 93.6 123 47.2
Glyma.12G046700 Glycine max HOM05D001401 ORTHO05D006368 1.7e-17 93.2 123 47.2
TPR.G28096 Trifolium pratense HOM05D001401 ORTHO05D006368 1.7e-17 93.2 129 43.4
VMungo1127G1180 Vigna mungo HOM05D001401 ORTHO05D006368 2.2e-17 92.8 123 47.2
MD05G1071000 Malus domestica HOM05D001401 ORTHO05D006368 2.9e-17 92.4 127 44.9
Manes.17G098401 Manihot esculenta HOM05D001401 ORTHO05D006368 2.9e-17 92.4 128 45.3
Glyma.11G121600 Glycine max HOM05D001401 ORTHO05D006368 5.0e-17 91.7 123 47.2
arahy.Tifrunner.gnm1.ann1.U2ETAV Arachis hypogaea HOM05D001401 ORTHO05D006368 6.5e-17 91.3 129 45.7
Gohir.A01G181100 Gossypium hirsutum HOM05D001401 ORTHO05D006368 6.5e-17 91.3 125 45.6
Psat7g205720 Pisum sativum HOM05D001401 ORTHO05D006368 6.5e-17 91.3 122 46.7
HanXRQChr10g0307141 Helianthus annuus HOM05D001401 ORTHO05D006368 1.1e-16 90.5 125 46.4
Phvul.011G048500 Phaseolus vulgaris HOM05D001401 ORTHO05D006368 1.1e-16 90.5 126 46.0
Ca_20836_v3 Cicer arietinum L. HOM05D001401 ORTHO05D006368 1.9e-16 89.7 119 47.9
MBI16_g36202_MAGBIO Magnolia biondii HOM05D001401 ORTHO05D002222 2.5e-16 89.4 131 45.8
AUR62011378 Chenopodium quinoa HOM05D001401 ORTHO05D006368 4.2e-16 88.6 122 42.6
Hund06213 Selenicereus undatus HOM05D001401 ORTHO05D006368 4.2e-16 88.6 127 45.7
Thhalv10022794m.g Eutrema salsugineum HOM05D001401 ORTHO05D006368 5.5e-16 88.2 125 45.6
THA.LOC104807334 Tarenaya hassleriana HOM05D001401 ORTHO05D006368 5.5e-16 88.2 123 41.5
Cpa.g.sc62.97 Carica papaya HOM05D001401 ORTHO05D006368 1.2e-15 87.0 132 45.5
AUR62016681 Chenopodium quinoa HOM05D001401 ORTHO05D006368 1.6e-15 86.7 122 42.6
ClCG09G017860 Citrullus lanatus HOM05D001401 ORTHO05D006368 2.7e-15 85.9 130 43.8
C07p07640 Brassica napus HOM05D001401 ORTHO05D006368 3.6e-15 85.5 127 44.9
BolC7t41185H Brassica oleracea HOM05D001401 ORTHO05D006368 3.6e-15 85.5 127 44.9
MELO3C018410.2 Cucumis melo HOM05D001401 ORTHO05D006368 3.6e-15 85.5 130 41.5
CsaV3_7G010190 Cucumis sativus L. HOM05D001401 ORTHO05D006368 3.6e-15 85.5 130 41.5
Hund00301 Selenicereus undatus HOM05D001401 ORTHO05D006368 3.6e-15 85.5 131 42.7
Gohir.D01G172200 Gossypium hirsutum HOM05D001401 ORTHO05D006368 6.1e-15 84.7 125 44.0
AT2G16070 Arabidopsis thaliana HOM05D001401 ORTHO05D006368 7.9e-15 84.3 127 42.5
Gorai.002G213800 Gossypium raimondii HOM05D001401 ORTHO05D006368 7.9e-15 84.3 125 44.0
Hund00294 Selenicereus undatus HOM05D001401 ORTHO05D006368 7.9e-15 84.3 131 42.7
A07p04770 Brassica napus HOM05D001401 ORTHO05D006368 1.0e-14 84.0 125 44.0
BraA07t28264Z Brassica rapa HOM05D001401 ORTHO05D006368 1.0e-14 84.0 125 44.0
CsaV3_2G014470 Cucumis sativus L. HOM05D001401 ORTHO05D006368 1.0e-14 84.0 120 44.2
MELO3C021952.2 Cucumis melo HOM05D001401 ORTHO05D002222 1.8e-14 83.2 123 44.7
Migut.B00279 Erythranthe guttata HOM05D001401 ORTHO05D006368 1.8e-14 83.2 118 47.5
Ah.01g006390 Amaranthus hybridus HOM05D001401 ORTHO05D006368 2.3e-14 82.8 123 44.7
Carub.0003s2988 Capsella rubella HOM05D001401 ORTHO05D006368 3.0e-14 82.4 128 43.8
CARHR106370 Cardamine hirsuta HOM05D001401 ORTHO05D006368 3.0e-14 82.4 126 41.3
Sp3g29340 Schrenkiella parvula HOM05D001401 ORTHO05D006368 3.0e-14 82.4 128 43.8
Atru.chr5.2919 Acer truncatum HOM05D001401 ORTHO05D006368 3.9e-14 82.0 131 42.7
Aa31LG8G13520 Aethionema arabicum HOM05D001401 ORTHO05D006368 3.9e-14 82.0 120 43.3
Sed0001319 Sechium edule HOM05D001401 ORTHO05D006368 5.2e-14 81.6 131 38.9
ClCG02G005370 Citrullus lanatus HOM05D001401 ORTHO05D006368 8.8e-14 80.9 127 41.7
ATR0733G254 Amborella trichopoda HOM05D001401 ORTHO05D006368 1.1e-13 80.5 136 42.6
TAR623G1717 Trochodendron aralioides HOM05D001401 ORTHO05D006368 2.0e-13 79.7 61 65.6
PSO541G5534 Papaver somniferum HOM05D001401 ORTHO05D006368 3.3e-13 79.0 129 40.3
Lalb_Chr03g0025871 Lupinus albus HOM05D001401 ORTHO05D006368 4.4e-13 78.6 124 44.4
Sc08g0000270 Simmondsia chinensis HOM05D001401 ORTHO05D006368 4.4e-13 78.6 129 41.9
Ah.01g019700 Amaranthus hybridus HOM05D001401 ORTHO05D002222 2.2e-12 76.3 113 38.9
BcaC01g03041 Brassica carinata HOM05D001401 ORTHO05D006368 2.2e-12 76.3 124 41.1
C03p56790 Brassica napus HOM05D001401 ORTHO05D006368 2.2e-12 76.3 124 41.1
BolC3t17961H Brassica oleracea HOM05D001401 ORTHO05D006368 2.2e-12 76.3 124 41.1
PSO675G0936 Papaver somniferum HOM05D001401 ORTHO05D006368 8.2e-12 74.3 129 38.8
BcaB08g34633 Brassica carinata HOM05D001401 ORTHO05D006368 1.4e-11 73.6 125 41.6
Eucgr.I01238 Eucalyptus grandis HOM05D001401 ORTHO05D006368 1.4e-11 73.6 132 44.7
Sed0001686 Sechium edule HOM05D001401 ORTHO05D006368 1.8e-11 73.2 130 38.5
GSVIVG01031902001 Vitis vinifera HOM05D001401 ORTHO05D006368 1.8e-11 73.2 47 74.5
CDE01G0160 Ceratophyllum demersum HOM05D001401 ORTHO05D006368 4.1e-11 72.0 125 40.0
THA.LOC104820173 Tarenaya hassleriana HOM05D001401 ORTHO05D006368 4.1e-11 72.0 110 39.1
Sed0023769 Sechium edule HOM05D001401 ORTHO05D006368 7.0e-11 71.2 130 40.8
Os07g0123300 Oryza sativa ssp. japonica HOM05D001401 ORTHO05D006368 1.6e-10 70.1 131 31.3
PGR042G1488 Punica granatum HOM05D001401 ORTHO05D006368 1.6e-10 70.1 108 45.4
A03p45690 Brassica napus HOM05D001401 ORTHO05D006368 2.0e-10 69.7 116 39.7
BraA03t13701Z Brassica rapa HOM05D001401 ORTHO05D006368 2.0e-10 69.7 116 39.7
BcaC06g36113 Brassica carinata HOM05D001401 ORTHO05D006368 1.0e-09 67.4 115 40.0
CDE04G2456 Ceratophyllum demersum HOM05D001401 ORTHO05D006368 2.7e-07 59.3 128 37.5
BcaB07g31630 Brassica carinata HOM05D006912 ORTHO05D008686 4.0e-06 55.5 120 37.5
Nn1g05138 Nelumbo nucifera HOM05D001401 ORTHO05D006368 4.0e-06 55.5 41 70.7
A09p10890 Brassica napus HOM05D001401 ORTHO05D006368 6.7e-06 54.7 119 37.8


User provided reference genes

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