Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1C290G6 Lonicera japonica HOM05D005072 ORTHO05D006209 0.0e+00 1095.1 549 100.0
Dinv24604 Davidia involucrata HOM05D005072 ORTHO05D006209 2.6e-255 885.2 595 75.6
CSS0034993 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 6.7e-235 817.4 546 75.6
TAR623G1264 Trochodendron aralioides HOM05D005072 ORTHO05D006209 2.2e-233 812.4 595 69.2
Cfa010164 Carpinus fangiana HOM05D005072 ORTHO05D006209 5.5e-229 797.7 598 68.7
Hma1.2p1_1843F.1_g305080 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 9.4e-229 797.0 593 68.3
TWI79G0414 Tripterygium wilfordii HOM05D005072 ORTHO05D006209 3.9e-227 791.6 592 67.7
Prupe.4G269200 Prunus persica HOM05D005072 ORTHO05D006209 1.4e-224 783.1 600 67.0
GSVIVG01037391001 Vitis vinifera HOM05D005072 ORTHO05D006209 9.1e-224 780.4 616 65.6
vmacro14280 Vaccinium macrocarpon HOM05D005072 ORTHO05D006209 1.0e-222 776.9 592 68.2
Ciclev10014694m.g Citrus clementina HOM05D005072 ORTHO05D006209 6.5e-222 774.2 585 67.7
CSS0024863 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 1.5e-218 763.1 507 75.9
Atru.chr3.2833 Acer truncatum HOM05D005072 ORTHO05D006209 2.2e-217 759.2 594 65.5
Thecc.09G251600 Theobroma cacao HOM05D005072 ORTHO05D006209 2.4e-216 755.7 598 64.7
MD03G1163400 Malus domestica HOM05D005072 ORTHO05D006209 1.2e-215 753.4 600 65.5
Aqoxy2G00052 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 4.5e-215 751.5 594 64.6
Haze_23549 Corylus avellana HOM05D005072 ORTHO05D006209 8.5e-214 747.3 623 63.7
PSO675G4775 Papaver somniferum HOM05D005072 ORTHO05D006209 1.4e-213 746.5 596 62.9
COL.COLO4_33262 Corchorus olitorius HOM05D005072 ORTHO05D006209 7.2e-213 744.2 597 63.5
PSO541G4749 Papaver somniferum HOM05D005072 ORTHO05D006209 2.1e-212 742.7 596 62.2
SGA_v2.0_scaffold16G07591 Striga asiatica HOM05D005072 ORTHO05D006209 4.7e-212 741.5 604 64.1
Duzib170G0952 Durio zibethinus HOM05D005072 ORTHO05D006209 1.0e-211 740.3 597 63.7
Gohir.A08G009400 Gossypium hirsutum HOM05D005072 ORTHO05D006209 3.0e-211 738.8 597 63.0
Gohir.D08G019500 Gossypium hirsutum HOM05D005072 ORTHO05D006209 5.2e-211 738.0 597 63.0
HanXRQChr05g0144311 Helianthus annuus HOM05D005072 ORTHO05D006209 6.7e-211 737.6 585 66.3
Gorai.004G014000 Gossypium raimondii HOM05D005072 ORTHO05D006209 1.1e-210 736.9 597 62.8
Cc01_g07180 Coffea canephora HOM05D005072 ORTHO05D006209 5.7e-210 734.6 594 65.5
RcHm_v2.0_Chr7g0190441 Rosa chinensis HOM05D005072 ORTHO05D006209 2.8e-209 732.3 602 64.0
Eucgr.B03761 Eucalyptus grandis HOM05D005072 ORTHO05D006209 1.1e-208 730.3 596 62.9
CANSAT54G0197 Cannabis sativa HOM05D005072 ORTHO05D006209 4.1e-208 728.4 590 63.1
FAN18G1184 Fragaria x ananassa HOM05D005072 ORTHO05D006209 1.0e-206 723.8 594 63.5
FvH4_5g07960 Fragaria vesca HOM05D005072 ORTHO05D006209 8.5e-206 720.7 590 63.2
Oeu032059.1 Olea europaea HOM05D005072 ORTHO05D006209 1.1e-205 720.3 590 64.7
DCAR_023860 Daucus carota HOM05D005072 ORTHO05D006209 1.2e-204 716.8 516 70.3
ECA238G1118 Erigeron canadensis HOM05D005072 ORTHO05D006209 2.1e-204 716.1 584 65.1
CAN.G651.4 Capsicum annuum HOM05D005072 ORTHO05D006209 3.6e-204 715.3 597 62.6
Lalb_Chr10g0106071 Lupinus albus HOM05D005072 ORTHO05D006209 1.0e-203 713.8 593 63.1
THA.LOC104799144 Tarenaya hassleriana HOM05D005072 ORTHO05D006209 1.8e-203 713.0 602 60.3
Manes.02G135100 Manihot esculenta HOM05D005072 ORTHO05D006209 4.0e-203 711.8 522 68.4
Ca_06178_v3 Cicer arietinum L. HOM05D005072 ORTHO05D006209 1.2e-202 710.3 594 62.3
Potri.009G022200 Populus trichocarpa HOM05D005072 ORTHO05D006209 2.6e-202 709.1 587 63.2
CiPaw.14G108700 Carya illinoinensis HOM05D005072 ORTHO05D006209 9.7e-202 707.2 520 69.2
FAN04G1678 Fragaria x ananassa HOM05D005072 ORTHO05D006209 3.7e-201 705.3 590 62.2
FAN13G0840 Fragaria x ananassa HOM05D005072 ORTHO05D006209 4.8e-201 704.9 590 62.2
Cpa.g.sc34.205 Carica papaya HOM05D005072 ORTHO05D006209 6.3e-201 704.5 589 61.8
FAN08G0571 Fragaria x ananassa HOM05D005072 ORTHO05D006209 2.9e-198 695.7 590 61.7
PGR102G1516 Punica granatum HOM05D005072 ORTHO05D006209 6.5e-198 694.5 588 61.7
Sopen01g004520 Solanum pennellii HOM05D005072 ORTHO05D006209 8.5e-198 694.1 597 60.8
Sp6g31350 Schrenkiella parvula HOM05D005072 ORTHO05D006209 1.5e-197 693.3 595 58.5
A02p01460 Brassica napus HOM05D005072 ORTHO05D006209 1.9e-197 693.0 595 58.2
CARHR200820 Cardamine hirsuta HOM05D005072 ORTHO05D006209 7.2e-197 691.0 582 59.5
C02p05680 Brassica napus HOM05D005072 ORTHO05D006209 9.4e-197 690.6 595 58.0
AL6G23090 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 1.6e-196 689.9 603 58.0
Migut.N02404 Erythranthe guttata HOM05D005072 ORTHO05D006209 1.6e-196 689.9 607 61.4
Solyc01g009030.4 Solanum lycopersicum HOM05D005072 ORTHO05D006209 1.6e-196 689.9 597 60.5
Lsat_1_v5_gn_2_36161 Lactuca sativa HOM05D005072 ORTHO05D006209 2.7e-196 689.1 575 63.8
BraA02t05125Z Brassica rapa HOM05D005072 ORTHO05D006209 4.7e-196 688.3 601 57.7
MBI13_g20755_MAGBIO Magnolia biondii HOM05D005072 ORTHO05D006209 4.7e-196 688.3 654 57.5
Nitab4.5_0002300g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 6.1e-196 688.0 604 60.4
TPR.G16394 Trifolium pratense HOM05D005072 ORTHO05D006209 1.4e-195 686.8 594 60.8
Aa31LG3G14940 Aethionema arabicum HOM05D005072 ORTHO05D006209 1.8e-195 686.4 608 57.7
Thhalv10013024m.g Eutrema salsugineum HOM05D005072 ORTHO05D006209 2.3e-195 686.0 600 58.0
BolC2t06512H Brassica oleracea HOM05D005072 ORTHO05D006209 3.0e-195 685.6 605 57.5
QL01p016041 Quercus lobata HOM05D005072 ORTHO05D006209 4.0e-195 685.3 789 49.4
Glyma.02G277200 Glycine max HOM05D005072 ORTHO05D006209 8.8e-195 684.1 595 59.8
ClCG02G022550 Citrullus lanatus HOM05D005072 ORTHO05D006209 2.6e-194 682.6 602 60.1
Glyma.14G038000 Glycine max HOM05D005072 ORTHO05D006209 2.6e-194 682.6 597 59.6
Medtr5g088780 Medicago truncatula HOM05D005072 ORTHO05D006209 2.6e-194 682.6 591 59.9
Carub.0006s1080 Capsella rubella HOM05D005072 ORTHO05D006209 5.7e-194 681.4 603 57.5
Phvul.008G203700 Phaseolus vulgaris HOM05D005072 ORTHO05D006209 1.7e-193 679.9 597 59.5
A03p05510 Brassica napus HOM05D005072 ORTHO05D006209 3.7e-193 678.7 598 57.4
C03p06430 Brassica napus HOM05D005072 ORTHO05D006209 2.4e-192 676.0 596 57.7
BolC3t13149H Brassica oleracea HOM05D005072 ORTHO05D006209 1.2e-191 673.7 594 57.9
Hund21956 Selenicereus undatus HOM05D005072 ORTHO05D006209 4.5e-191 671.8 604 58.6
LjContig00564g0010958 Lotus japonicus HOM05D005072 ORTHO05D006209 7.7e-191 671.0 580 61.2
Nitab4.5_0000428g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 1.7e-190 669.8 582 60.0
arahy.Tifrunner.gnm1.ann1.BCWF2K Arachis hypogaea HOM05D005072 ORTHO05D006209 6.6e-190 667.9 581 59.2
MELO3C014531.2 Cucumis melo HOM05D005072 ORTHO05D006209 8.6e-190 667.5 598 58.7
CsaV3_6G038680 Cucumis sativus L. HOM05D005072 ORTHO05D006209 4.2e-189 665.2 598 58.9
MSTRG.12421 Avicennia marina HOM05D005072 ORTHO05D006209 7.2e-189 664.5 607 58.8
Psat0s680g0080 Pisum sativum HOM05D005072 ORTHO05D006209 1.7e-185 653.3 594 57.6
arahy.Tifrunner.gnm1.ann1.2SU3A5 Arachis hypogaea HOM05D005072 ORTHO05D006209 1.1e-184 650.6 613 56.0
EL10Ac4g10071 Beta vulgaris HOM05D005072 ORTHO05D006209 4.5e-183 645.2 588 57.5
BraA03t09889Z Brassica rapa HOM05D005072 ORTHO05D006209 1.5e-181 640.2 522 60.7
Peaxi162Scf00050g02225 Petunia axillaris HOM05D005072 ORTHO05D006209 1.1e-176 624.0 580 56.6
Sed0004908 Sechium edule HOM05D005072 ORTHO05D006209 1.5e-173 613.6 556 58.1
Ah.04g159570 Amaranthus hybridus HOM05D005072 ORTHO05D006209 7.3e-173 611.3 589 54.5
Sc06g0004780 Simmondsia chinensis HOM05D005072 ORTHO05D006209 1.7e-169 600.1 489 61.8
Actinidia38495 Actinidia chinensis HOM05D005072 ORTHO05D006209 8.3e-169 597.8 356 82.6
SalBow3G4478 Salvia bowleyana HOM05D005072 ORTHO05D006209 1.4e-168 597.0 626 55.0
AT5G12290 Arabidopsis thaliana HOM05D005072 ORTHO05D006209 1.7e-166 590.1 510 58.4
BcaB01g05412 Brassica carinata HOM05D005072 ORTHO05D006209 1.9e-165 586.6 599 52.6
Lj1C297T8 Lonicera japonica HOM05D005072 ORTHO05D006209 7.3e-165 584.7 289 99.3
AUR62006578 Chenopodium quinoa HOM05D005072 ORTHO05D006209 1.6e-159 567.0 587 51.3
AUR62000232 Chenopodium quinoa HOM05D005072 ORTHO05D006209 3.1e-155 552.7 612 49.8
ATR0307G105 Amborella trichopoda HOM05D005072 ORTHO05D006209 5.2e-155 552.0 469 61.2
unitig_27.g25017 Utricularia gibba HOM05D005072 ORTHO05D006209 4.9e-153 545.4 567 52.2
Zm00001eb017230 Zea mays HOM05D005072 ORTHO05D006209 9.2e-152 541.2 561 50.4
HPP92_015601 Vanilla planifolia HOM05D005072 ORTHO05D006209 2.3e-118 430.3 303 69.6
Pp3c22_1870 Physcomitrium patens HOM05D005072 ORTHO05D006209 1.3e-116 424.5 561 41.7
SMO147G0386 Selaginella moellendorffii HOM05D005072 ORTHO05D006209 2.2e-113 413.7 499 43.9
Os03g0377500 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 2.3e-110 403.7 446 48.2
Duzib168G1271 Durio zibethinus HOM05D005072 ORTHO05D006209 2.2e-108 397.1 374 53.5
Mapoly0034s0093 Marchantia polymorpha HOM05D005072 ORTHO05D006209 6.3e-108 395.6 572 39.9
Pp3c3_6740 Physcomitrium patens HOM05D005072 ORTHO05D006209 3.2e-104 383.3 557 39.5
Nn7g36972 Nelumbo nucifera HOM05D005072 ORTHO05D006209 3.9e-102 376.3 359 53.8
CDE07G0611 Ceratophyllum demersum HOM05D005072 ORTHO05D006209 1.0e-86 325.1 216 77.3
Glyma.14G037400 Glycine max HOM05D005072 ORTHO05D006209 1.3e-84 318.2 216 74.1
Actinidia29952 Actinidia chinensis HOM05D005072 ORTHO05D006209 1.3e-73 281.6 281 54.1
Aqoxy279s001 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 2.6e-69 267.3 288 50.7
CBR_g51661 Chara braunii HOM05D005072 ORTHO05D006209 5.7e-69 266.2 340 41.2
PGSC0003DMG403022702 Solanum tuberosum HOM05D005072 ORTHO05D006209 1.7e-68 264.6 181 75.7
AagrBONN_evm.TU.Sc2ySwM_117.924 Anthoceros agrestis HOM05D005072 ORTHO05D006209 5.0e-65 253.1 363 37.7
Lj1A297G59 Lonicera japonica HOM05D005072 ORTHO05D006209 1.1e-56 225.3 112 98.2
Os03g0377300 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 8.1e-55 219.2 350 35.7
Actinidia27132 Actinidia chinensis HOM05D005072 ORTHO05D006209 9.2e-43 179.1 142 63.4
SEGI_25760 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 9.2e-43 179.1 123 65.9
SEGI_30846 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 1.8e-38 164.9 122 69.7
Hma1.2p1_2592F.1_g325060 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 2.6e-37 161.0 107 72.9
ECA233G6112 Erigeron canadensis HOM05D005072 ORTHO05D006209 6.6e-33 146.4 212 42.0
Lsat_1_v5_gn_5_119240 Lactuca sativa HOM05D005072 ORTHO05D006209 1.3e-28 132.1 128 54.7
AL340U10010 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 6.6e-25 119.8 94 55.3
MCO07G292 Micromonas commoda HOM05D005072 ORTHO05D006209 1.9e-24 118.2 357 24.6
Nn001s41348 Nelumbo nucifera HOM05D005072 ORTHO05D006209 3.3e-24 117.5 74 75.7
Cre14.g610351 Chlamydomonas reinhardtii HOM05D005072 ORTHO05D006209 1.4e-22 112.1 216 34.3
SEGI_31829 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 4.0e-22 110.5 121 50.4
arahy.Tifrunner.gnm1.ann1.ELE64U Arachis hypogaea HOM05D005072 ORTHO05D006209 1.4e-19 102.1 182 36.8
Os03g0356470 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 1.2e-18 99.0 102 45.1
Oeu032057.1 Olea europaea HOM05D005072 ORTHO05D006209 3.3e-16 90.9 173 37.0
Lsat_1_v5_gn_8_119321 Lactuca sativa HOM05D005072 ORTHO05D006209 5.6e-16 90.1 61 67.2
Hma1.2p1_2592F.1_g325070 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 7.4e-16 89.7 55 76.4
ECA248G3958 Erigeron canadensis HOM05D005072 ORTHO05D006209 4.8e-15 87.0 107 43.9
VMungo1127G1498 Vigna mungo HOM05D005072 ORTHO05D006209 1.4e-14 85.5 56 66.1
VMungo1245G0001 Vigna mungo HOM05D005072 ORTHO05D006209 9.0e-14 82.8 60 63.3
arahy.Tifrunner.gnm1.ann1.N4LM1Q Arachis hypogaea HOM05D005072 ORTHO05D007788 1.2e-13 82.4 58 74.1
Lsat_1_v5_gn_4_59101 Lactuca sativa HOM05D005072 ORTHO05D006209 1.2e-13 82.4 67 64.2
Lsat_1_v5_gn_4_56401 Lactuca sativa HOM05D005072 ORTHO05D006209 1.5e-13 82.0 54 68.5
VMungo1215G1729 Vigna mungo HOM05D005072 ORTHO05D006209 1.5e-13 82.0 55 65.5
Cfa026272 Carpinus fangiana HOM05D005072 ORTHO05D126095 3.4e-13 80.9 244 26.2
SMO025G0001 Selaginella moellendorffii HOM05D012532 ORTHO05D006209 2.1e-10 71.6 138 35.5
Lsat_1_v5_gn_2_76440 Lactuca sativa HOM05D000807 ORTHO05D000662 5.1e-09 67.0 36 80.6
Glyma.09G128251 Glycine max HOM05D005072 ORTHO05D006209 9.6e-08 62.8 59 54.2
Nn1g07055 Nelumbo nucifera HOM05D005072 ORTHO05D006209 1.8e-06 58.5 58 55.2
arahy.Tifrunner.gnm1.ann1.FGGA0D Arachis hypogaea HOM05D002489 ORTHO05D002653 3.1e-06 57.8 128 32.0
Oeu032047.1 Olea europaea HOM05D005072 ORTHO05D006209 3.1e-06 57.8 72 45.8


User provided reference genes

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