Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1C240T0 Lonicera japonica HOM05D000699 ORTHO05D000519 2.6e-74 282.3 187 100.0
DCAR_012205 Daucus carota HOM05D000699 ORTHO05D000519 3.0e-25 119.4 192 46.4
Dinv29450 Davidia involucrata HOM05D000699 ORTHO05D000519 5.6e-24 115.2 167 58.7
CANSAT54G2779 Cannabis sativa HOM05D000699 ORTHO05D000519 3.4e-21 105.9 184 58.7
Prupe.6G124900 Prunus persica HOM05D000699 ORTHO05D000519 4.4e-21 105.5 202 55.4
FAN13G0551 Fragaria x ananassa HOM05D000699 ORTHO05D000519 9.8e-21 104.4 195 50.8
FAN18G0510 Fragaria x ananassa HOM05D000699 ORTHO05D000519 1.4e-19 100.5 194 54.1
QL01p013166 Quercus lobata HOM05D000699 ORTHO05D000519 1.4e-19 100.5 223 43.9
FvH4_5g10780 Fragaria vesca HOM05D000699 ORTHO05D000519 1.9e-19 100.1 193 54.4
FAN04G0542 Fragaria x ananassa HOM05D000699 ORTHO05D000519 2.7e-18 96.3 191 50.8
ClCG01G012450 Citrullus lanatus HOM05D000699 ORTHO05D000519 1.0e-17 94.4 177 57.6
QL01p013178 Quercus lobata HOM05D000699 ORTHO05D000519 1.3e-17 94.0 187 52.4
QL10p017845 Quercus lobata HOM05D000699 ORTHO05D000519 2.3e-17 93.2 178 50.6
Cfa010056 Carpinus fangiana HOM05D000699 ORTHO05D000519 3.9e-17 92.4 208 52.4
CsaV3_1G014670 Cucumis sativus L. HOM05D000699 ORTHO05D000519 6.6e-17 91.7 207 44.4
PGR119G1263 Punica granatum HOM05D000699 ORTHO05D000519 6.6e-17 91.7 197 52.8
MELO3C004745.2 Cucumis melo HOM05D000699 ORTHO05D000519 1.9e-16 90.1 176 51.1
Sc12g0004330 Simmondsia chinensis HOM05D000699 ORTHO05D000519 1.9e-16 90.1 180 47.8
TWI75G0625 Tripterygium wilfordii HOM05D000699 ORTHO05D000519 1.9e-16 90.1 251 36.3
Migut.A00201 Erythranthe guttata HOM05D000699 ORTHO05D000519 5.6e-16 88.6 243 39.5
EL10Ac7g15795 Beta vulgaris HOM05D000699 ORTHO05D000519 9.5e-16 87.8 179 33.5
MELO3C004749.2 Cucumis melo HOM05D000699 ORTHO05D000519 1.6e-15 87.0 196 53.6
Cc08_g09630 Coffea canephora HOM05D000699 ORTHO05D000519 3.6e-15 85.9 176 38.1
Actinidia07232 Actinidia chinensis HOM05D000699 ORTHO05D000519 8.1e-15 84.7 188 55.9
Actinidia24197 Actinidia chinensis HOM05D000699 ORTHO05D000519 2.3e-14 83.2 210 51.0
CsaV3_1G014650 Cucumis sativus L. HOM05D000699 ORTHO05D000519 6.8e-14 81.6 207 51.7
Haze_23421 Corylus avellana HOM05D000699 ORTHO05D000519 5.8e-13 78.6 193 52.8
CANSAT54G1825 Cannabis sativa HOM05D000699 ORTHO05D000519 7.6e-13 78.2 149 36.9
Hund20870 Selenicereus undatus HOM05D000699 ORTHO05D000519 7.6e-13 78.2 188 30.9
FAN21G3796 Fragaria x ananassa HOM05D000699 ORTHO05D000519 2.2e-12 76.6 236 42.8
FAN25G2630 Fragaria x ananassa HOM05D000699 ORTHO05D000519 2.2e-12 76.6 240 43.3
AUR62039237 Chenopodium quinoa HOM05D000699 ORTHO05D000519 3.7e-12 75.9 60 63.3
FAN11G3458 Fragaria x ananassa HOM05D000699 ORTHO05D000519 6.4e-12 75.1 236 42.4
FAN26G1643 Fragaria x ananassa HOM05D000699 ORTHO05D000519 6.4e-12 75.1 253 43.9
Sed0009002 Sechium edule HOM05D000699 ORTHO05D000519 8.4e-12 74.7 256 42.2
DCAR_003946 Daucus carota HOM05D000699 ORTHO05D000519 1.4e-11 73.9 45 64.4
FAN23G3009 Fragaria x ananassa HOM05D000699 ORTHO05D000519 1.4e-11 73.9 257 42.0
SGA_v2.0_scaffold103G30006 Striga asiatica HOM05D000699 ORTHO05D000519 1.9e-11 73.6 199 39.2
Sabra09G0112700 Salix brachista HOM05D000699 ORTHO05D000519 2.4e-11 73.2 187 35.8
Sabra09G0115200 Salix brachista HOM05D000699 ORTHO05D000519 2.4e-11 73.2 187 35.8
AUR62009790 Chenopodium quinoa HOM05D000699 ORTHO05D000519 2.1e-10 70.1 67 53.7
FvH4_3g29630 Fragaria vesca HOM05D000699 ORTHO05D000519 2.7e-10 69.7 244 40.6
TWI79G0530 Tripterygium wilfordii HOM05D000699 ORTHO05D000519 4.6e-10 68.9 41 68.3
TWI79G1387 Tripterygium wilfordii HOM05D000699 ORTHO05D000519 4.6e-10 68.9 41 68.3
ECA236G1996 Erigeron canadensis HOM05D000699 ORTHO05D000519 7.8e-10 68.2 176 44.3
HanXRQChr16g0510081 Helianthus annuus HOM05D000699 ORTHO05D000519 1.0e-09 67.8 40 65.0
HanXRQChr16g0510091 Helianthus annuus HOM05D000699 ORTHO05D000519 1.0e-09 67.8 40 65.0
HanXRQChr16g0509861 Helianthus annuus HOM05D000699 ORTHO05D000519 1.3e-09 67.4 177 36.7
HanXRQChr10g0291481 Helianthus annuus HOM05D000699 ORTHO05D000519 1.7e-09 67.0 42 61.9
Potri.009G097400 Populus trichocarpa HOM05D000699 ORTHO05D000519 1.7e-09 67.0 42 59.5
Prupe.6G125100 Prunus persica HOM05D000699 ORTHO05D000519 3.0e-09 66.2 40 65.0
HanXRQChr16g0509871 Helianthus annuus HOM05D000699 ORTHO05D000519 3.9e-09 65.9 37 67.6
HanXRQChr16g0509881 Helianthus annuus HOM05D000699 ORTHO05D000519 3.9e-09 65.9 37 67.6
Prupe.6G125200 Prunus persica HOM05D000699 ORTHO05D000519 3.9e-09 65.9 40 67.5
Prupe.6G125400 Prunus persica HOM05D000699 ORTHO05D000519 3.9e-09 65.9 40 67.5
Atru.chr5.2593 Acer truncatum HOM05D000699 ORTHO05D000519 5.1e-09 65.5 199 34.7
Lsat_1_v5_gn_7_86221 Lactuca sativa HOM05D000699 ORTHO05D000519 5.1e-09 65.5 35 68.6
Lsat_1_v5_gn_7_86661 Lactuca sativa HOM05D000699 ORTHO05D000519 5.1e-09 65.5 35 68.6
Ah.08g215890 Amaranthus hybridus HOM05D000699 ORTHO05D000519 8.6e-09 64.7 179 29.6
HanXRQChr16g0510061 Helianthus annuus HOM05D000699 ORTHO05D000519 1.1e-08 64.3 35 68.6
Lsat_1_v5_gn_3_95940 Lactuca sativa HOM05D000699 ORTHO05D000519 1.1e-08 64.3 42 57.1
HanXRQChr16g0510031 Helianthus annuus HOM05D000699 ORTHO05D000519 1.5e-08 63.9 180 34.4
MD11G1162000 Malus domestica HOM05D000699 ORTHO05D000519 1.5e-08 63.9 35 71.4
MD05G1087500 Malus domestica HOM05D000699 ORTHO05D000519 1.9e-08 63.5 40 62.5
ClCG01G012160 Citrullus lanatus HOM05D000699 ORTHO05D000519 2.5e-08 63.2 37 67.6
Ah.08g215910 Amaranthus hybridus HOM05D000699 ORTHO05D000519 4.3e-08 62.4 61 50.8
PSO339G1535 Papaver somniferum HOM05D000699 ORTHO05D000519 5.6e-08 62.0 71 59.2
PSO384G0034 Papaver somniferum HOM05D000699 ORTHO05D000519 5.6e-08 62.0 71 59.2
FAN08G1613 Fragaria x ananassa HOM05D000699 ORTHO05D000519 7.3e-08 61.6 35 65.7
FvH4_2g05430 Fragaria vesca HOM05D000699 ORTHO05D000519 9.6e-08 61.2 35 62.9
FAN24G2436 Fragaria x ananassa HOM05D000699 ORTHO05D000519 9.6e-08 61.2 35 62.9
Nitab4.5_0005646g0010 Nicotiana tabacum HOM05D000699 ORTHO05D000519 9.6e-08 61.2 193 39.4
RcHm_v2.0_Chr5g0054971 Rosa chinensis HOM05D000699 ORTHO05D000519 9.6e-08 61.2 35 65.7
SGA_v2.0_scaffold225G43085 Striga asiatica HOM05D000699 ORTHO05D000519 9.6e-08 61.2 35 60.0
AT3G19430 Arabidopsis thaliana HOM05D000699 ORTHO05D000519 1.2e-07 60.8 45 62.2
MELO3C018477.2 Cucumis melo HOM05D000699 ORTHO05D000519 1.2e-07 60.8 35 65.7
Lsat_1_v5_gn_7_86641 Lactuca sativa HOM05D000699 ORTHO05D000519 1.2e-07 60.8 197 40.6
Lj9A321T82 Lonicera japonica HOM05D000699 ORTHO05D000519 1.2e-07 60.8 35 62.9
Oeu031103.1 Olea europaea HOM05D000699 ORTHO05D000519 1.2e-07 60.8 35 65.7
Prupe.8G132700 Prunus persica HOM05D000699 ORTHO05D000519 1.2e-07 60.8 37 62.2
CiPaw.14G102200 Carya illinoinensis HOM05D000699 ORTHO05D000519 1.6e-07 60.5 184 50.0
CsaV3_7G008300 Cucumis sativus L. HOM05D000699 ORTHO05D000519 1.6e-07 60.5 35 65.7
QL11p034220 Quercus lobata HOM05D000699 ORTHO05D000519 2.8e-07 59.7 41 53.7
Sed0016996 Sechium edule HOM05D000699 ORTHO05D000519 4.7e-07 58.9 35 62.9
Cc08_g09640 Coffea canephora HOM05D000699 ORTHO05D000519 6.2e-07 58.5 185 49.2
CSS0010971 Camellia sinensis var. sinensis HOM05D000699 ORTHO05D000519 8.1e-07 58.2 42 57.1
AUR62028849 Chenopodium quinoa HOM05D000699 ORTHO05D000519 8.1e-07 58.2 37 59.5
Peaxi162Scf00227g00718 Petunia axillaris HOM05D000699 ORTHO05D000519 8.1e-07 58.2 40 57.5
AUR62023735 Chenopodium quinoa HOM05D000699 ORTHO05D000519 1.1e-06 57.8 41 48.8
Sp3g17490 Schrenkiella parvula HOM05D000699 ORTHO05D000519 1.4e-06 57.4 45 53.3
EL10Ac9g22305 Beta vulgaris HOM05D000699 ORTHO05D000519 1.8e-06 57.0 41 53.7
Medtr2g030825 Medicago truncatula HOM05D000699 ORTHO05D000519 1.8e-06 57.0 41 53.7
Peaxi162Scf00016g02253 Petunia axillaris HOM05D000699 ORTHO05D000519 1.8e-06 57.0 144 31.2
CSS0047489 Camellia sinensis var. sinensis HOM05D000699 ORTHO05D000519 3.1e-06 56.2 37 56.8
Medtr2g030845 Medicago truncatula HOM05D000699 ORTHO05D000519 3.1e-06 56.2 37 56.8
GSVIVG01036177001 Vitis vinifera HOM05D000699 ORTHO05D000519 3.1e-06 56.2 40 55.0
EL10Ac9g22303 Beta vulgaris HOM05D000699 ORTHO05D000519 4.0e-06 55.8 35 57.1
AUR62039236 Chenopodium quinoa HOM05D000699 ORTHO05D000519 4.0e-06 55.8 44 52.3
BcaC09g48896 Brassica carinata HOM05D000699 ORTHO05D000519 5.2e-06 55.5 43 51.2
A01p35230 Brassica napus HOM05D000699 ORTHO05D000519 5.2e-06 55.5 43 51.2
BolC1t04436H Brassica oleracea HOM05D000699 ORTHO05D000519 5.2e-06 55.5 43 51.2
BraA01t03604Z Brassica rapa HOM05D000699 ORTHO05D000519 5.2e-06 55.5 43 51.2
Aa31LG8G6180 Aethionema arabicum HOM05D000699 ORTHO05D000519 8.9e-06 54.7 43 44.2
EL10Ac3g05208 Beta vulgaris HOM05D000699 ORTHO05D000519 8.9e-06 54.7 40 50.0
BcaB04g20704 Brassica carinata HOM05D000699 ORTHO05D000519 8.9e-06 54.7 43 51.2
C01p44670 Brassica napus HOM05D000699 ORTHO05D000519 8.9e-06 54.7 43 51.2
AUR62009789 Chenopodium quinoa HOM05D000699 ORTHO05D000519 8.9e-06 54.7 44 50.0
AUR62035598 Chenopodium quinoa HOM05D000699 ORTHO05D000519 8.9e-06 54.7 41 46.3
ClCG02G006230 Citrullus lanatus HOM05D000699 ORTHO05D000519 8.9e-06 54.7 43 44.2


User provided reference genes

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