Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1C23T21 Lonicera japonica HOM05D005060 ORTHO05D005975 5.3e-52 207.6 120 100.0
Lj1E24T1 Lonicera japonica HOM05D005060 ORTHO05D005975 2.1e-24 115.9 69 87.0
Rhsim04G0118500 Rhododendron simsii HOM05D005060 ORTHO05D005975 6.1e-24 114.4 117 59.8
ClCG04G005980 Citrullus lanatus HOM05D005060 ORTHO05D005975 2.2e-21 105.9 115 53.0
Atru.chr1.1520 Acer truncatum HOM05D005060 ORTHO05D005975 3.7e-21 105.1 120 61.7
Nitab4.5_0003286g0020 Nicotiana tabacum HOM05D005060 ORTHO05D005975 1.1e-20 103.6 120 54.2
Potri.016G027600 Populus trichocarpa HOM05D005060 ORTHO05D005975 3.1e-20 102.1 119 53.8
CAN.G128.101 Capsicum annuum HOM05D005060 ORTHO05D005975 5.3e-20 101.3 117 59.8
MELO3C019148.2 Cucumis melo HOM05D005060 ORTHO05D005975 1.0e-18 97.1 115 50.4
CsaV3_4G029150 Cucumis sativus L. HOM05D005060 ORTHO05D005975 2.9e-18 95.5 115 50.4
ECA236G1981 Erigeron canadensis HOM05D005060 ORTHO05D005975 1.5e-17 93.2 116 55.2
PSO339G2385 Papaver somniferum HOM05D005060 ORTHO05D005975 1.5e-17 93.2 124 51.6
PSO384G0259 Papaver somniferum HOM05D005060 ORTHO05D005975 1.5e-17 93.2 124 51.6
Sabra16G0032200 Salix brachista HOM05D005060 ORTHO05D005975 1.5e-17 93.2 119 48.7
Sopen10g031600 Solanum pennellii HOM05D005060 ORTHO05D005975 1.5e-17 93.2 119 55.5
PGSC0003DMG400028107 Solanum tuberosum HOM05D005060 ORTHO05D005975 1.5e-17 93.2 119 56.3
Sabra16G0031900 Salix brachista HOM05D005060 ORTHO05D005975 1.9e-17 92.8 120 48.3
TAR369G0553 Trochodendron aralioides HOM05D005060 ORTHO05D005975 2.5e-17 92.4 120 54.2
MD07G1060800 Malus domestica HOM05D005060 ORTHO05D005975 3.2e-17 92.0 121 50.4
Solyc10g081100.3 Solanum lycopersicum HOM05D005060 ORTHO05D005975 4.2e-17 91.7 119 54.6
MSTRG.6293 Avicennia marina HOM05D005060 ORTHO05D005975 9.4e-17 90.5 119 54.6
vmacro08973 Vaccinium macrocarpon HOM05D005060 ORTHO05D005975 9.4e-17 90.5 119 51.3
Migut.J01559 Erythranthe guttata HOM05D005060 ORTHO05D005975 1.2e-16 90.1 119 56.3
Hma1.2p1_0031F.1_g018400 Hydrangea macrophylla HOM05D005060 ORTHO05D005975 3.6e-16 88.6 115 58.3
Hma1.2p1_2089F.1_g313840 Hydrangea macrophylla HOM05D005060 ORTHO05D005975 3.6e-16 88.6 115 58.3
Haze_20306 Corylus avellana HOM05D005060 ORTHO05D005975 4.7e-16 88.2 122 45.9
Lsat_1_v5_gn_8_109400 Lactuca sativa HOM05D005060 ORTHO05D005975 4.7e-16 88.2 101 54.5
DCAR_009091 Daucus carota HOM05D005060 ORTHO05D005975 6.1e-16 87.8 117 53.8
MBI19_g25016_MAGBIO Magnolia biondii HOM05D005060 ORTHO05D005975 8.0e-16 87.4 119 52.1
RcHm_v2.0_Chr1g0331611 Rosa chinensis HOM05D005060 ORTHO05D005975 2.3e-15 85.9 119 49.6
HanXRQChr05g0130501 Helianthus annuus HOM05D005060 ORTHO05D005975 4.0e-15 85.1 118 54.2
Sed0011991 Sechium edule HOM05D005060 ORTHO05D005975 4.0e-15 85.1 115 47.8
MD02G1260500 Malus domestica HOM05D005060 ORTHO05D005975 5.2e-15 84.7 122 47.5
TWI53G1989 Tripterygium wilfordii HOM05D005060 ORTHO05D005975 5.2e-15 84.7 119 48.7
Nitab4.5_0000062g0300 Nicotiana tabacum HOM05D005060 ORTHO05D005975 1.2e-14 83.6 120 51.7
GSVIVG01025849001 Vitis vinifera HOM05D005060 ORTHO05D005975 2.0e-14 82.8 118 54.2
Cfa019938 Carpinus fangiana HOM05D005060 ORTHO05D005975 4.4e-14 81.6 116 46.6
Lalb_Chr22g0358011 Lupinus albus HOM05D005060 ORTHO05D005975 5.7e-14 81.3 128 46.9
Ciclev10013047m.g Citrus clementina HOM05D005060 ORTHO05D005975 7.5e-14 80.9 119 52.1
Lalb_Chr24g0400621 Lupinus albus HOM05D005060 ORTHO05D005975 7.5e-14 80.9 118 47.5
Lj1g0025022 Lotus japonicus HOM05D005060 ORTHO05D005975 9.8e-14 80.5 90 60.0
Ah.04g150220 Amaranthus hybridus HOM05D005060 ORTHO05D005975 1.3e-13 80.1 115 50.4
Ca_08351_v3 Cicer arietinum L. HOM05D005060 ORTHO05D005975 3.7e-13 78.6 111 46.8
Actinidia24546 Actinidia chinensis HOM05D005060 ORTHO05D005975 4.8e-13 78.2 110 55.5
SGA_v2.0_scaffold66G22311 Striga asiatica HOM05D005060 ORTHO05D005975 4.8e-13 78.2 122 45.9
Aqoxy1G00045 Aquilegia oxysepala HOM05D005060 ORTHO05D005975 6.3e-13 77.8 118 50.0
Peaxi162Scf00153g01321 Petunia axillaris HOM05D005060 ORTHO05D005975 8.3e-13 77.4 120 50.8
PGR042G1122 Punica granatum HOM05D005060 ORTHO05D005975 8.3e-13 77.4 86 65.1
Medtr7g088520 Medicago truncatula HOM05D005060 ORTHO05D005975 1.1e-12 77.0 118 49.2
Psat0s2745g0280 Pisum sativum HOM05D005060 ORTHO05D005975 1.1e-12 77.0 113 46.0
Sc13g0000780 Simmondsia chinensis HOM05D005060 ORTHO05D005975 1.1e-12 77.0 119 51.3
unitig_21.g20673 Utricularia gibba HOM05D005060 ORTHO05D005975 1.8e-12 76.3 91 53.8
Oeu023007.1 Olea europaea HOM05D005060 ORTHO05D005975 2.4e-12 75.9 104 56.7
Cpa.g.sc33.199 Carica papaya HOM05D005060 ORTHO05D005975 4.1e-12 75.1 118 52.5
Lalb_Chr14g0365381 Lupinus albus HOM05D005060 ORTHO05D005975 7.0e-12 74.3 117 46.2
TWI74G0004 Tripterygium wilfordii HOM05D005060 ORTHO05D005975 9.1e-12 73.9 119 47.9
Nn7g37114 Nelumbo nucifera HOM05D005060 ORTHO05D005975 1.6e-11 73.2 116 46.6
Manes.08G066600 Manihot esculenta HOM05D005060 ORTHO05D005975 2.0e-11 72.8 119 51.3
SGA_v2.0_scaffold69G23194 Striga asiatica HOM05D005060 ORTHO05D005975 2.7e-11 72.4 120 46.7
FAN03G0591 Fragaria x ananassa HOM05D005060 ORTHO05D005975 3.5e-11 72.0 116 43.1
Ah.13g077380 Amaranthus hybridus HOM05D005060 ORTHO05D005975 5.9e-11 71.2 120 47.5
Glyma.19G124900 Glycine max HOM05D005060 ORTHO05D005975 1.0e-10 70.5 107 47.7
Gohir.A13G001200 Gossypium hirsutum HOM05D005060 ORTHO05D005975 1.3e-10 70.1 80 56.2
Potri.006G029500 Populus trichocarpa HOM05D005060 ORTHO05D005975 2.3e-10 69.3 112 42.9
Prupe.2G065900 Prunus persica HOM05D005060 ORTHO05D005975 2.3e-10 69.3 120 42.5
Thecc.05G132800 Theobroma cacao HOM05D005060 ORTHO05D005975 2.3e-10 69.3 92 51.1
CSS0016899 Camellia sinensis var. sinensis HOM05D005060 ORTHO05D005975 2.9e-10 68.9 118 52.5
FAN01G1650 Fragaria x ananassa HOM05D005060 ORTHO05D005975 1.5e-09 66.6 104 44.2
Phvul.001G116500 Phaseolus vulgaris HOM05D005060 ORTHO05D005975 1.9e-09 66.2 118 42.4
CDE04G0407 Ceratophyllum demersum HOM05D005060 ORTHO05D005975 2.5e-09 65.9 112 48.2
QL07p014517 Quercus lobata HOM05D005060 ORTHO05D005975 2.5e-09 65.9 119 41.2
TPR.G27972 Trifolium pratense HOM05D005060 ORTHO05D005975 2.5e-09 65.9 116 38.8
Os01g0278900 Oryza sativa ssp. japonica HOM05D005060 ORTHO05D005975 3.3e-09 65.5 85 47.1
Actinidia05489 Actinidia chinensis HOM05D005060 ORTHO05D005975 4.2e-09 65.1 54 70.4
Gohir.A01G192800 Gossypium hirsutum HOM05D005060 ORTHO05D005975 5.5e-09 64.7 91 52.7
Gohir.D01G177000 Gossypium hirsutum HOM05D005060 ORTHO05D005975 5.5e-09 64.7 91 52.7
Gorai.002G226200 Gossypium raimondii HOM05D005060 ORTHO05D005975 5.5e-09 64.7 91 52.7
FvH4_7g05170 Fragaria vesca HOM05D005060 ORTHO05D005975 7.2e-09 64.3 115 40.9
FAN06G0894 Fragaria x ananassa HOM05D005060 ORTHO05D005975 7.2e-09 64.3 115 40.9
FAN06G1820 Fragaria x ananassa HOM05D002241 ORTHO05D002458 7.2e-09 64.3 115 40.9
Haze_20302 Corylus avellana HOM05D005060 ORTHO05D005975 9.5e-09 63.9 118 41.5
FAN10G4368 Fragaria x ananassa HOM05D002241 ORTHO05D002458 9.5e-09 63.9 104 45.2
Potri.006G028500 Populus trichocarpa HOM05D005060 ORTHO05D005975 9.5e-09 63.9 112 47.3
Cc06_g22810 Coffea canephora HOM05D005060 ORTHO05D005975 1.2e-08 63.5 119 45.4
VMungo1383G0657 Vigna mungo HOM05D005060 ORTHO05D005975 2.8e-08 62.4 103 44.7
BcaC08g44810 Brassica carinata HOM05D005060 ORTHO05D005975 3.6e-08 62.0 94 52.1
AT3G56910 Arabidopsis thaliana HOM05D005060 ORTHO05D005975 6.1e-08 61.2 92 50.0
EL10Ac3g07347 Beta vulgaris HOM05D005060 ORTHO05D005975 6.1e-08 61.2 113 46.0
Lj1C23T22 Lonicera japonica HOM05D005060 ORTHO05D005975 6.1e-08 61.2 73 65.8
arahy.Tifrunner.gnm1.ann1.U3TF2Z Arachis hypogaea HOM05D005060 ORTHO05D005975 8.0e-08 60.8 61 62.3
CAN.G959.26 Capsicum annuum HOM05D005060 ORTHO05D005975 1.0e-07 60.5 117 43.6
CiPaw.10G123900 Carya illinoinensis HOM05D005060 ORTHO05D005975 1.0e-07 60.5 114 46.5
Nitab4.5_0001270g0130 Nicotiana tabacum HOM05D005060 ORTHO05D005975 1.0e-07 60.5 109 46.8
Cpa.g.sc33.198 Carica papaya HOM05D005060 ORTHO05D005975 1.8e-07 59.7 122 44.3
CARHR167060 Cardamine hirsuta HOM05D005060 ORTHO05D005975 2.3e-07 59.3 92 50.0
unitig_744.g24164 Utricularia gibba HOM05D003084 ORTHO05D003580 2.3e-07 59.3 88 47.7
Sabra06G0020700 Salix brachista HOM05D005060 ORTHO05D005975 4.0e-07 58.5 112 47.3
PGSC0003DMG400007184 Solanum tuberosum HOM05D005060 ORTHO05D005975 4.0e-07 58.5 118 44.1
CDE02G1443 Ceratophyllum demersum HOM05D005060 ORTHO05D005975 5.2e-07 58.2 112 45.5
DCAR_013509 Daucus carota HOM05D000827 ORTHO05D001318 5.2e-07 58.2 111 42.3
Duzib093G0151 Durio zibethinus HOM05D005060 ORTHO05D005975 5.2e-07 58.2 90 47.8
arahy.Tifrunner.gnm1.ann1.3R5KQS Arachis hypogaea HOM05D005060 ORTHO05D005975 1.5e-06 56.6 61 59.0
Manes.13G072000 Manihot esculenta HOM05D005060 ORTHO05D005975 2.0e-06 56.2 119 45.4
Sopen10g028770 Solanum pennellii HOM05D005060 ORTHO05D005975 2.0e-06 56.2 116 43.1
BcaB02g08343 Brassica carinata HOM05D005060 ORTHO05D005975 2.6e-06 55.8 89 47.2
A07p23120 Brassica napus HOM05D005060 ORTHO05D005975 3.4e-06 55.5 89 48.3
AUR62020993 Chenopodium quinoa HOM05D005060 ORTHO05D005975 4.4e-06 55.1 120 42.5
Eucgr.A02181 Eucalyptus grandis HOM05D005060 ORTHO05D005975 5.7e-06 54.7 120 40.8
QL07p014521 Quercus lobata HOM05D005060 ORTHO05D005975 7.5e-06 54.3 122 42.6
Hund24512 Selenicereus undatus HOM05D005060 ORTHO05D005975 7.5e-06 54.3 115 44.3
Glyma.03G120300 Glycine max HOM05D005060 ORTHO05D005975 9.8e-06 53.9 67 55.2


User provided reference genes

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