Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1C20T16 Lonicera japonica HOM05D003790 ORTHO05D004481 5.5e-98 360.9 176 100.0
Lj1C20T6 Lonicera japonica HOM05D003790 ORTHO05D004481 5.3e-93 344.4 176 96.6
Lj2P1202T13 Lonicera japonica HOM05D003790 ORTHO05D004481 8.6e-43 177.6 174 55.2
PGSC0003DMG400037362 Solanum tuberosum HOM05D003790 ORTHO05D004481 3.3e-42 175.6 172 53.5
CAN.G69.5 Capsicum annuum HOM05D003790 ORTHO05D004481 1.6e-41 173.3 181 54.1
CiPaw.08G091700 Carya illinoinensis HOM05D003790 ORTHO05D004481 4.0e-40 168.7 179 55.9
DCAR_018309 Daucus carota HOM05D003790 ORTHO05D004481 8.9e-40 167.5 178 51.7
PGSC0003DMG400009002 Solanum tuberosum HOM05D003790 ORTHO05D004481 2.6e-39 166.0 169 52.7
Nitab4.5_0000116g0070 Nicotiana tabacum HOM05D003790 ORTHO05D004481 9.9e-39 164.1 183 50.8
Nitab4.5_0017359g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 2.2e-38 162.9 188 49.5
TAR633G1354 Trochodendron aralioides HOM05D003790 ORTHO05D004481 4.9e-38 161.8 180 52.2
VMungo0720G2360 Vigna mungo HOM05D003790 ORTHO05D004481 6.4e-38 161.4 177 52.0
CiPaw.07G114900 Carya illinoinensis HOM05D003790 ORTHO05D004481 8.3e-38 161.0 173 51.4
TAR633G0094 Trochodendron aralioides HOM05D003790 ORTHO05D004481 8.3e-38 161.0 180 52.2
Manes.01G225600 Manihot esculenta HOM05D003790 ORTHO05D004481 1.4e-37 160.2 164 51.8
Nitab4.5_0010548g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 1.4e-37 160.2 181 50.8
Peaxi162Scf00001g00262 Petunia axillaris HOM05D003790 ORTHO05D004481 2.4e-37 159.5 190 48.9
Rhsim13G0006400 Rhododendron simsii HOM05D003790 ORTHO05D004481 3.2e-37 159.1 179 49.7
Lalb_Chr02g0146651 Lupinus albus HOM05D003790 ORTHO05D004481 4.1e-37 158.7 181 49.7
Medtr1g087710 Medicago truncatula HOM05D003790 ORTHO05D004481 7.1e-37 157.9 172 51.7
Nitab4.5_0025993g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 7.1e-37 157.9 184 48.4
Peaxi162Scf00001g00254 Petunia axillaris HOM05D003790 ORTHO05D004481 7.1e-37 157.9 182 50.5
Phvul.007G216200 Phaseolus vulgaris HOM05D003790 ORTHO05D004481 7.1e-37 157.9 176 51.1
Eucgr.H01068 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.6e-36 156.8 172 48.3
QL12p028945 Quercus lobata HOM05D003790 ORTHO05D004481 2.1e-36 156.4 165 53.3
Aqoxy2G02808 Aquilegia oxysepala HOM05D003790 ORTHO05D004481 2.7e-36 156.0 178 48.3
Rhsim01G0289200 Rhododendron simsii HOM05D003790 ORTHO05D004481 3.5e-36 155.6 172 49.4
Sopen01g031440 Solanum pennellii HOM05D003790 ORTHO05D004481 7.8e-36 154.5 173 49.1
Actinidia25835 Actinidia chinensis HOM05D003270 ORTHO05D003662 1.0e-35 154.1 178 54.5
Solyc01g079670.2 Solanum lycopersicum HOM05D003790 ORTHO05D004481 1.3e-35 153.7 170 50.6
Sopen01g031450 Solanum pennellii HOM05D003790 ORTHO05D004481 1.7e-35 153.3 166 51.2
Peaxi162Scf00001g00263 Petunia axillaris HOM05D003790 ORTHO05D004481 2.3e-35 152.9 185 49.2
Cfa005842 Carpinus fangiana HOM05D003790 ORTHO05D004481 3.0e-35 152.5 171 49.7
Oeu005872.1 Olea europaea HOM05D003790 ORTHO05D004481 3.0e-35 152.5 179 46.9
Duzib138G1652 Durio zibethinus HOM05D003790 ORTHO05D004481 3.9e-35 152.1 181 48.6
Haze_05008 Corylus avellana HOM05D003790 ORTHO05D004481 6.6e-35 151.4 169 50.9
Potri.002G198800 Populus trichocarpa HOM05D003790 ORTHO05D004481 6.6e-35 151.4 181 50.8
Actinidia21012 Actinidia chinensis HOM05D003790 ORTHO05D004481 8.6e-35 151.0 178 53.4
Sabra02G0159000 Salix brachista HOM05D003790 ORTHO05D004481 1.1e-34 150.6 200 47.5
Oeu005873.1 Olea europaea HOM05D003790 ORTHO05D004481 1.9e-34 149.8 174 50.0
Solyc01g079660.2 Solanum lycopersicum HOM05D003790 ORTHO05D004481 3.3e-34 149.1 174 48.3
TAR362G0521 Trochodendron aralioides HOM05D003790 ORTHO05D004481 3.3e-34 149.1 163 52.8
vmacro02415 Vaccinium macrocarpon HOM05D003790 ORTHO05D004481 4.3e-34 148.7 174 49.4
PGR119G2441 Punica granatum HOM05D003790 ORTHO05D004481 7.3e-34 147.9 167 49.1
ECA248G3170 Erigeron canadensis HOM05D003790 ORTHO05D004481 1.2e-33 147.1 181 47.0
Eucgr.L02691 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.1e-33 146.4 169 53.8
Lalb_Chr06g0166611 Lupinus albus HOM05D003790 ORTHO05D004481 2.8e-33 146.0 170 48.8
Nn3g21628 Nelumbo nucifera HOM05D003790 ORTHO05D004481 2.8e-33 146.0 180 47.8
Sabra14G0091700 Salix brachista HOM05D003790 ORTHO05D004481 2.8e-33 146.0 180 47.8
Thecc.01G310000 Theobroma cacao HOM05D003790 ORTHO05D004481 2.8e-33 146.0 178 50.0
TPR.G7317 Trifolium pratense HOM05D003790 ORTHO05D004481 3.6e-33 145.6 174 46.6
Glyma.02G014300 Glycine max HOM05D003790 ORTHO05D004481 4.7e-33 145.2 181 47.0
Lsat_1_v5_gn_9_541 Lactuca sativa HOM05D003790 ORTHO05D004481 1.1e-32 144.1 172 51.2
PGR119G1194 Punica granatum HOM05D003790 ORTHO05D004481 3.1e-32 142.5 175 47.4
Dinv33098 Davidia involucrata HOM05D003790 ORTHO05D004481 4.0e-32 142.1 187 46.0
Eucgr.L01709 Eucalyptus grandis HOM05D003790 ORTHO05D004481 4.0e-32 142.1 172 46.5
Potri.014G123400 Populus trichocarpa HOM05D003790 ORTHO05D004481 4.0e-32 142.1 179 48.6
Eucgr.E02370 Eucalyptus grandis HOM05D003790 ORTHO05D004481 8.9e-32 141.0 169 52.7
Eucgr.H01059 Eucalyptus grandis HOM05D003790 ORTHO05D004481 8.9e-32 141.0 171 47.4
Carub.0001s0174 Capsella rubella HOM05D003790 ORTHO05D004481 1.2e-31 140.6 183 46.4
Gorai.001G143000 Gossypium raimondii HOM05D003790 ORTHO05D004481 1.2e-31 140.6 181 43.6
Nitab4.5_0000116g0080 Nicotiana tabacum HOM05D003790 ORTHO05D004481 1.2e-31 140.6 177 47.5
Oeu008329.1 Olea europaea HOM05D003790 ORTHO05D004481 1.5e-31 140.2 175 49.1
HanXRQChr01g0000871 Helianthus annuus HOM05D003790 ORTHO05D004481 2.0e-31 139.8 177 44.1
HanXRQChr05g0137341 Helianthus annuus HOM05D003790 ORTHO05D004481 2.6e-31 139.4 185 45.9
HanXRQChr05g0137351 Helianthus annuus HOM05D003790 ORTHO05D004481 2.6e-31 139.4 175 48.6
Ah.11g049420 Amaranthus hybridus HOM05D003790 ORTHO05D004481 3.4e-31 139.0 184 49.5
BolC5t28918H Brassica oleracea HOM05D003790 ORTHO05D004481 3.4e-31 139.0 174 46.0
Duzib133G0291 Durio zibethinus HOM05D003790 ORTHO05D004481 4.4e-31 138.7 177 46.9
Gohir.D07G131700 Gossypium hirsutum HOM05D003790 ORTHO05D004481 4.4e-31 138.7 181 43.1
Glyma.10G015000 Glycine max HOM05D003790 ORTHO05D004481 5.8e-31 138.3 179 44.7
PSO210G7449 Papaver somniferum HOM05D003790 ORTHO05D004481 5.8e-31 138.3 176 47.2
PGR119G2399 Punica granatum HOM05D003790 ORTHO05D004481 5.8e-31 138.3 169 47.9
Gohir.A12G126700 Gossypium hirsutum HOM05D003790 ORTHO05D004481 9.9e-31 137.5 178 44.9
Eucgr.H01065 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.3e-30 137.1 176 46.6
A10p01380 Brassica napus HOM05D003790 ORTHO05D004481 2.2e-30 136.3 172 45.9
BraA10t42414Z Brassica rapa HOM05D003790 ORTHO05D004481 2.2e-30 136.3 174 45.4
PSO761G0583 Papaver somniferum HOM05D003790 ORTHO05D004481 2.2e-30 136.3 180 46.1
BcaB03g15798 Brassica carinata HOM05D003790 ORTHO05D004481 3.8e-30 135.6 174 43.7
Cc08_g11830 Coffea canephora HOM05D003790 ORTHO05D004481 4.9e-30 135.2 208 43.8
Gohir.A07G127400 Gossypium hirsutum HOM05D003790 ORTHO05D004481 6.4e-30 134.8 182 43.4
Ciclev10022416m.g Citrus clementina HOM05D003790 ORTHO05D004481 8.4e-30 134.4 183 45.9
Dinv10067 Davidia involucrata HOM05D003790 ORTHO05D004481 8.4e-30 134.4 168 48.2
Gorai.008G141400 Gossypium raimondii HOM05D003790 ORTHO05D004481 8.4e-30 134.4 180 45.0
Sp6g02070 Schrenkiella parvula HOM05D003790 ORTHO05D004481 8.4e-30 134.4 176 44.3
THA.LOC104801296 Tarenaya hassleriana HOM05D003790 ORTHO05D004481 8.4e-30 134.4 173 45.1
C05p01360 Brassica napus HOM05D003790 ORTHO05D004481 1.1e-29 134.0 174 44.8
Gorai.007G124700 Gossypium raimondii HOM05D003790 ORTHO05D004481 1.4e-29 133.7 178 42.1
Sp1g01670 Schrenkiella parvula HOM05D003790 ORTHO05D004481 1.4e-29 133.7 181 45.3
AT5G38700 Arabidopsis thaliana HOM05D003790 ORTHO05D004481 1.9e-29 133.3 180 44.4
BcaC07g42307 Brassica carinata HOM05D003790 ORTHO05D004481 4.1e-29 132.1 178 43.3
CsaV3_7G029800 Cucumis sativus L. HOM05D003790 ORTHO05D004481 4.1e-29 132.1 180 43.3
Eucgr.L01710 Eucalyptus grandis HOM05D003790 ORTHO05D004481 4.1e-29 132.1 170 48.2
Thhalv10009571m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 5.4e-29 131.7 179 43.6
ClCG09G005270 Citrullus lanatus HOM05D003790 ORTHO05D004481 7.1e-29 131.3 170 44.1
Gohir.D11G116500 Gossypium hirsutum HOM05D003790 ORTHO05D004481 7.1e-29 131.3 179 42.5
Sed0026960 Sechium edule HOM05D003790 ORTHO05D004481 7.1e-29 131.3 172 44.2
C08p53190 Brassica napus HOM05D003790 ORTHO05D004481 9.2e-29 131.0 181 44.8
BolC8t52834H Brassica oleracea HOM05D003790 ORTHO05D004481 9.2e-29 131.0 181 44.8
Ca_10301_v3 Cicer arietinum L. HOM05D003790 ORTHO05D004481 9.2e-29 131.0 167 46.7
Hma1.2p1_1302F.1_g274340 Hydrangea macrophylla HOM05D003790 ORTHO05D004481 9.2e-29 131.0 182 45.1
SGA_v2.0_scaffold198G41126 Striga asiatica HOM05D003790 ORTHO05D004481 9.2e-29 131.0 175 47.4
A09p68580 Brassica napus HOM05D003790 ORTHO05D004481 1.6e-28 130.2 178 43.3
BraA09t42201Z Brassica rapa HOM05D003790 ORTHO05D004481 1.6e-28 130.2 178 43.3
MELO3C015941.2 Cucumis melo HOM05D003790 ORTHO05D004481 1.6e-28 130.2 172 42.4
BcaC07g42401 Brassica carinata HOM05D003790 ORTHO05D004481 2.7e-28 129.4 173 44.5
Cpa.g.sc18.4 Carica papaya HOM05D003790 ORTHO05D004481 7.8e-28 127.9 177 44.6
Eucgr.H01062 Eucalyptus grandis HOM05D003790 ORTHO05D004481 7.8e-28 127.9 159 47.2
FAN04G0217 Fragaria x ananassa HOM05D003790 ORTHO05D004481 7.8e-28 127.9 199 39.7
TWI36G1341 Tripterygium wilfordii HOM05D003790 ORTHO05D004481 7.8e-28 127.9 177 45.2
CARHR001970 Cardamine hirsuta HOM05D003790 ORTHO05D004481 1.0e-27 127.5 179 41.9
Eucgr.K03524 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.3e-27 127.1 175 44.0
AL1G12020 Arabidopsis lyrata HOM05D003790 ORTHO05D004481 1.7e-27 126.7 169 45.0
Sed0014571 Sechium edule HOM05D003790 ORTHO05D004481 1.7e-27 126.7 167 40.1
CANSAT25G2552 Cannabis sativa HOM05D003790 ORTHO05D004481 5.1e-27 125.2 178 43.3
FvH4_5g39610 Fragaria vesca HOM05D003790 ORTHO05D004481 6.6e-27 124.8 195 40.0
FAN08G1995 Fragaria x ananassa HOM05D003790 ORTHO05D004481 6.6e-27 124.8 195 40.0
Atru.chr5.1052 Acer truncatum HOM05D003790 ORTHO05D004481 8.7e-27 124.4 177 44.1
Carub.0006s3500 Capsella rubella HOM05D003790 ORTHO05D004481 8.7e-27 124.4 175 43.4
A03p31160 Brassica napus HOM05D003790 ORTHO05D004481 1.9e-26 123.2 176 44.9
FAN18G0157 Fragaria x ananassa HOM05D003790 ORTHO05D004481 1.9e-26 123.2 194 39.7
Thhalv10029373m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 2.5e-26 122.9 174 44.8
FAN13G3073 Fragaria x ananassa HOM05D003790 ORTHO05D004481 2.5e-26 122.9 193 38.9
BcaB01g02435 Brassica carinata HOM05D003790 ORTHO05D004481 3.3e-26 122.5 182 45.1
BraA03t12296Z Brassica rapa HOM05D003790 ORTHO05D004481 5.6e-26 121.7 177 44.6
Prupe.8G269600 Prunus persica HOM05D003790 ORTHO05D004481 9.6e-26 120.9 176 43.8
Aa31LG5G1840 Aethionema arabicum HOM05D003790 ORTHO05D004481 1.2e-25 120.6 173 44.5
AL6G50980 Arabidopsis lyrata HOM05D003790 ORTHO05D004481 1.2e-25 120.6 175 45.7
Gohir.A11G111300 Gossypium hirsutum HOM05D003790 ORTHO05D004481 1.6e-25 120.2 180 40.6
SalBow2G3380 Salvia bowleyana HOM05D003790 ORTHO05D004481 3.6e-25 119.0 162 44.4
AT4G02170 Arabidopsis thaliana HOM05D003790 ORTHO05D004481 6.2e-25 118.2 173 43.4
BolC3t16086H Brassica oleracea HOM05D003790 ORTHO05D004481 1.1e-24 117.5 176 43.8
RcHm_v2.0_Chr7g0241911 Rosa chinensis HOM05D003790 ORTHO05D004481 1.4e-24 117.1 185 38.9
HPP92_025189 Vanilla planifolia HOM05D003790 ORTHO05D004481 2.4e-24 116.3 174 42.0
BcaC01g06770 Brassica carinata HOM05D003790 ORTHO05D004481 9.0e-24 114.4 176 43.2
BcaC01g06771 Brassica carinata HOM05D003790 ORTHO05D004481 9.0e-24 114.4 176 43.2
C03p38000 Brassica napus HOM05D003790 ORTHO05D004481 9.0e-24 114.4 176 43.2
Oeu008453.1 Olea europaea HOM05D003688 ORTHO05D004481 3.8e-22 109.0 157 43.3
EL10As5g23497 Beta vulgaris HOM05D003790 ORTHO05D004481 4.9e-22 108.6 178 42.1
Migut.D00101 Erythranthe guttata HOM05D003790 ORTHO05D004481 6.4e-22 108.2 160 43.1
Sc17g0000570 Simmondsia chinensis HOM05D003790 ORTHO05D004481 8.4e-22 107.8 174 40.2
Eucgr.L01711 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.9e-21 106.7 143 43.4
Eucgr.L02503 Eucalyptus grandis HOM05D003790 ORTHO05D004481 7.1e-21 104.8 170 41.8
TWI75G0985 Tripterygium wilfordii HOM05D003790 ORTHO05D004481 7.1e-21 104.8 159 40.3
COL.COLO4_23265 Corchorus olitorius HOM05D003790 ORTHO05D004481 1.2e-20 104.0 153 43.1
Eucgr.K03525 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.5e-20 102.4 156 39.7
Actinidia21418 Actinidia chinensis HOM05D003790 ORTHO05D004481 2.3e-19 99.8 155 43.2
MD11G1317200 Malus domestica HOM05D003790 ORTHO05D004481 2.3e-19 99.8 212 35.8
HPP92_006897 Vanilla planifolia HOM05D003790 ORTHO05D004481 3.0e-19 99.4 154 39.6
Gohir.D12G130100 Gossypium hirsutum HOM05D003790 ORTHO05D004481 3.3e-18 95.9 122 44.3
CARHR250350 Cardamine hirsuta HOM05D003790 ORTHO05D004481 5.6e-18 95.1 117 47.0
Duzib264G0610 Durio zibethinus HOM05D003790 ORTHO05D004481 2.1e-17 93.2 172 39.0
Eucgr.E02488 Eucalyptus grandis HOM05D003790 ORTHO05D004481 6.2e-17 91.7 106 49.1
Thecc.01G102100 Theobroma cacao HOM05D003790 ORTHO05D004481 4.0e-16 89.0 172 37.2
Os03g0302800 Oryza sativa ssp. japonica HOM05D003790 ORTHO05D004481 5.3e-16 88.6 200 35.5
Eucgr.F04057 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.7e-14 83.6 110 42.7
AUR62011841 Chenopodium quinoa HOM05D003790 ORTHO05D004481 2.9e-14 82.8 171 36.3
Duzib147G1191 Durio zibethinus HOM05D003790 ORTHO05D004481 1.1e-13 80.9 177 35.6
AUR62024684 Chenopodium quinoa HOM05D003790 ORTHO05D004481 1.4e-13 80.5 176 34.7
Eucgr.F04083 Eucalyptus grandis HOM05D003790 ORTHO05D004481 5.4e-13 78.6 110 41.8
ATR0706G232 Amborella trichopoda HOM05D003790 ORTHO05D004481 3.5e-12 75.9 161 32.9
Eucgr.L00541 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.5e-12 75.9 118 40.7
CsaV3_4G001110 Cucumis sativus L. HOM05D003790 ORTHO05D044967 6.0e-12 75.1 115 36.5
SGA_v2.0_scaffold334G49053 Striga asiatica HOM05D003790 ORTHO05D004481 1.0e-11 74.3 110 40.9
Thhalv10029363m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 1.8e-11 73.6 135 40.0
Zm00001eb014210 Zea mays HOM05D003790 ORTHO05D004481 5.1e-11 72.0 203 34.0
COL.COLO4_09960 Corchorus olitorius HOM05D003790 ORTHO05D004481 8.7e-11 71.2 176 34.7
Eucgr.H01752 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.1e-10 70.9 55 67.3
MELO3C017926.2 Cucumis melo HOM05D003790 ORTHO05D044967 3.3e-10 69.3 149 29.5
MD03G1297400 Malus domestica HOM05D003790 ORTHO05D004481 3.3e-10 69.3 214 29.0
Eucgr.A02768 Eucalyptus grandis HOM05D003790 ORTHO05D004481 5.6e-10 68.6 73 53.4
Zm00001eb396420 Zea mays HOM05D003790 ORTHO05D004481 1.6e-09 67.0 190 33.7
Sc17g0000580 Simmondsia chinensis HOM05D003790 ORTHO05D004481 1.8e-08 63.5 112 36.6
HPP92_011875 Vanilla planifolia HOM05D003790 ORTHO05D004481 2.4e-08 63.2 174 32.2
SEGI_15713 Sequoiadendron giganteum HOM05D001131 ORTHO05D000972 4.0e-08 62.4 204 23.5
Aqoxy3G01772 Aquilegia oxysepala HOM05D001131 ORTHO05D000972 2.6e-07 59.7 209 26.3
Aqoxy5G02997 Aquilegia oxysepala HOM05D001131 ORTHO05D000972 2.6e-07 59.7 204 24.0
SEGI_22681 Sequoiadendron giganteum HOM05D001131 ORTHO05D000972 4.5e-07 58.9 187 27.3
Nn6g33912 Nelumbo nucifera HOM05D003790 ORTHO05D004481 9.9e-07 57.8 89 38.2
ATR0580G176 Amborella trichopoda HOM05D003790 ORTHO05D004481 3.8e-06 55.8 98 34.7
CAN.G69.6 Capsicum annuum HOM05D003790 ORTHO05D004481 3.8e-06 55.8 67 47.8


User provided reference genes

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