Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1C206G15 Lonicera japonica HOM05D002505 ORTHO05D006559 2.8e-163 578.6 295 100.0
Dinv37391 Davidia involucrata HOM05D002505 ORTHO05D007115 5.2e-85 318.5 387 50.6
CSS0039073 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 6.8e-85 318.2 388 50.0
TAR626G1844 Trochodendron aralioides HOM05D002505 ORTHO05D006559 3.3e-79 299.3 397 47.9
Actinidia12750 Actinidia chinensis HOM05D002505 ORTHO05D006559 3.1e-77 292.7 386 46.9
CSS0016681 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 2.0e-76 290.0 395 46.3
Rhsim06G0244600 Rhododendron simsii HOM05D002505 ORTHO05D006559 8.4e-75 284.6 388 45.6
Rhsim09G0088500 Rhododendron simsii HOM05D002505 ORTHO05D006559 8.4e-75 284.6 392 45.9
PGSC0003DMG400022499 Solanum tuberosum HOM05D002505 ORTHO05D006559 1.9e-74 283.5 383 48.3
TWI59G0446 Tripterygium wilfordii HOM05D002505 ORTHO05D006559 1.9e-74 283.5 383 47.0
vmacro00789 Vaccinium macrocarpon HOM05D002505 ORTHO05D006559 1.2e-73 280.8 388 45.6
Eucgr.D02598 Eucalyptus grandis HOM05D002505 ORTHO05D006559 1.6e-73 280.4 165 83.0
MD10G1217100 Malus domestica HOM05D002505 ORTHO05D006559 4.6e-73 278.9 172 77.9
Solyc01g098030.4 Solanum lycopersicum HOM05D002505 ORTHO05D006559 6.0e-73 278.5 373 48.3
Sopen01g041610 Solanum pennellii HOM05D002505 ORTHO05D006559 7.8e-73 278.1 303 51.8
MSTRG.14571 Avicennia marina HOM05D002505 ORTHO05D006559 1.7e-72 276.9 300 53.0
Atru.chr1.1039 Acer truncatum HOM05D002505 ORTHO05D006559 3.9e-72 275.8 381 45.7
Nn4g25029 Nelumbo nucifera HOM05D002505 ORTHO05D006559 3.9e-72 275.8 380 44.7
Peaxi162Scf00225g00129 Petunia axillaris HOM05D002505 ORTHO05D006559 3.9e-72 275.8 324 50.0
MD05G1239100 Malus domestica HOM05D002505 ORTHO05D006559 8.7e-72 274.6 172 76.2
CiPaw.15G113000 Carya illinoinensis HOM05D002505 ORTHO05D006559 1.1e-71 274.2 173 77.5
Ciclev10019766m.g Citrus clementina HOM05D002505 ORTHO05D006559 1.1e-71 274.2 172 77.3
Thecc.09G195000 Theobroma cacao HOM05D002505 ORTHO05D006559 1.5e-71 273.9 165 80.0
Atru.chr3.1220 Acer truncatum HOM05D002505 ORTHO05D006559 2.5e-71 273.1 165 78.2
Prupe.4G127000 Prunus persica HOM05D002505 ORTHO05D006559 7.3e-71 271.6 165 80.0
ClCG07G010710 Citrullus lanatus HOM05D002505 ORTHO05D006559 1.3e-70 270.8 165 78.8
GSVIVG01031552001 Vitis vinifera HOM05D002505 ORTHO05D006559 3.6e-70 269.2 165 80.0
Sed0021026 Sechium edule HOM05D002505 ORTHO05D006559 5.3e-69 265.4 173 75.7
Sc18g0006950 Simmondsia chinensis HOM05D002505 ORTHO05D006559 6.9e-69 265.0 392 45.4
Nitab4.5_0002361g0170 Nicotiana tabacum HOM05D002505 ORTHO05D006559 2.0e-68 263.5 164 77.4
Nitab4.5_0002840g0110 Nicotiana tabacum HOM05D002505 ORTHO05D006559 2.0e-68 263.5 164 77.4
Gohir.D13G211600 Gossypium hirsutum HOM05D002505 ORTHO05D006559 2.6e-68 263.1 182 70.9
Gorai.013G241700 Gossypium raimondii HOM05D002505 ORTHO05D006559 2.6e-68 263.1 182 70.9
RcHm_v2.0_Chr5g0023231 Rosa chinensis HOM05D002505 ORTHO05D006559 2.6e-68 263.1 165 78.8
Duzib168G0650 Durio zibethinus HOM05D002505 ORTHO05D006559 5.8e-68 261.9 165 76.4
FAN16G0440 Fragaria x ananassa HOM05D002505 ORTHO05D006559 5.8e-68 261.9 165 77.6
FAN25G1470 Fragaria x ananassa HOM05D002505 ORTHO05D006559 5.8e-68 261.9 165 77.6
Gohir.A13G207000 Gossypium hirsutum HOM05D002505 ORTHO05D006559 9.9e-68 261.2 175 71.4
Oeu019749.1 Olea europaea HOM05D002505 ORTHO05D006559 9.9e-68 261.2 165 74.5
Lj6g0017559 Lotus japonicus HOM05D002505 ORTHO05D006559 1.3e-67 260.8 302 51.7
Manes.08G161700 Manihot esculenta HOM05D002505 ORTHO05D006559 1.3e-67 260.8 165 75.8
Cpa.g.sc77.87 Carica papaya HOM05D002505 ORTHO05D006559 1.7e-67 260.4 164 75.0
Phvul.006G122700 Phaseolus vulgaris HOM05D002505 ORTHO05D006559 3.8e-67 259.2 194 68.0
CsaV3_4G007590 Cucumis sativus L. HOM05D002505 ORTHO05D006559 4.9e-67 258.8 173 72.8
FvH4_3g14000 Fragaria vesca HOM05D002505 ORTHO05D006559 4.9e-67 258.8 165 76.4
FAN11G2806 Fragaria x ananassa HOM05D002505 ORTHO05D006559 4.9e-67 258.8 165 76.4
FAN21G2970 Fragaria x ananassa HOM05D002505 ORTHO05D006559 1.4e-66 257.3 165 75.8
Cc05_g16590 Coffea canephora HOM05D002505 ORTHO05D006559 2.4e-66 256.5 165 74.5
ATR0057G033 Amborella trichopoda HOM05D002505 ORTHO05D006559 3.2e-66 256.1 173 70.5
arahy.Tifrunner.gnm1.ann1.GJQ7VP Arachis hypogaea HOM05D002505 ORTHO05D006559 5.4e-66 255.4 291 50.5
CAN.G134.186 Capsicum annuum HOM05D002505 ORTHO05D006559 5.4e-66 255.4 164 74.4
Migut.H01653 Erythranthe guttata HOM05D002505 ORTHO05D006559 9.3e-66 254.6 165 73.3
Lalb_Chr20g0120281 Lupinus albus HOM05D002505 ORTHO05D006559 9.3e-66 254.6 398 41.5
arahy.Tifrunner.gnm1.ann1.C6HHUS Arachis hypogaea HOM05D002505 ORTHO05D006559 1.2e-65 254.2 291 50.9
arahy.Tifrunner.gnm1.ann1.91B0ED Arachis hypogaea HOM05D002505 ORTHO05D006559 2.1e-65 253.4 300 49.0
MELO3C016182.2 Cucumis melo HOM05D002505 ORTHO05D006559 3.5e-65 252.7 173 70.5
DCAR_009664 Daucus carota HOM05D002505 ORTHO05D006559 1.3e-64 250.8 164 70.7
Phvul.006G073200 Phaseolus vulgaris HOM05D002505 ORTHO05D006559 1.8e-64 250.4 297 49.5
PGR102G1955 Punica granatum HOM05D002505 ORTHO05D006559 8.7e-64 248.1 165 73.9
Ca_18602_v3 Cicer arietinum L. HOM05D002505 ORTHO05D006559 1.5e-63 247.3 165 74.5
Glyma.09G030100 Glycine max HOM05D002505 ORTHO05D006559 1.5e-63 247.3 177 68.9
SGA_v2.0_scaffold49G18207 Striga asiatica HOM05D002505 ORTHO05D006559 1.9e-63 246.9 164 73.2
Psat4g091000 Pisum sativum HOM05D002505 ORTHO05D006559 7.4e-63 245.0 165 73.9
VMungo1309G1878 Vigna mungo HOM05D002505 ORTHO05D006559 1.6e-62 243.8 178 68.5
VMungo0540G1128 Vigna mungo HOM05D002505 ORTHO05D006559 2.8e-62 243.0 172 69.8
Ah.09g227860 Amaranthus hybridus HOM05D002505 ORTHO05D006559 3.4e-60 236.1 173 70.5
CANSAT21G0880 Cannabis sativa HOM05D002505 ORTHO05D006559 3.4e-60 236.1 156 75.6
AUR62007763 Chenopodium quinoa HOM05D002505 ORTHO05D006559 3.4e-60 236.1 343 46.1
AUR62002958 Chenopodium quinoa HOM05D002505 ORTHO05D006559 4.5e-60 235.7 349 44.7
AUR62016680 Chenopodium quinoa HOM05D002505 ORTHO05D006559 4.5e-60 235.7 174 66.7
AUR62011379 Chenopodium quinoa HOM05D002505 ORTHO05D006559 7.6e-60 235.0 166 69.3
HanXRQChr05g0159341 Helianthus annuus HOM05D002505 ORTHO05D006559 3.8e-59 232.6 170 67.1
Hund09330 Selenicereus undatus HOM05D002505 ORTHO05D006559 1.1e-58 231.1 165 67.9
AT1G53645 Arabidopsis thaliana HOM05D002505 ORTHO05D006559 1.9e-58 230.3 171 63.7
CDE05G0972 Ceratophyllum demersum HOM05D002505 ORTHO05D006559 1.9e-58 230.3 373 39.7
Sp1g40180 Schrenkiella parvula HOM05D002505 ORTHO05D006559 1.9e-58 230.3 171 63.7
Medtr8g078230 Medicago truncatula HOM05D002505 ORTHO05D006559 5.5e-58 228.8 165 69.1
HPP92_002279 Vanilla planifolia HOM05D002505 ORTHO05D006559 9.3e-58 228.0 331 43.5
Carub.0001s4291 Capsella rubella HOM05D002505 ORTHO05D006559 1.2e-57 227.6 171 63.2
Lsat_1_v5_gn_5_3041 Lactuca sativa HOM05D002505 ORTHO05D006559 2.1e-57 226.9 384 39.8
AL1G62310 Arabidopsis lyrata HOM05D002505 ORTHO05D006559 7.9e-57 224.9 171 62.0
Potri.015G137000 Populus trichocarpa HOM05D002505 ORTHO05D006559 7.9e-57 224.9 162 67.3
PSO170G3666 Papaver somniferum HOM05D002505 ORTHO05D006559 1.8e-56 223.8 173 60.7
THA.LOC104822601 Tarenaya hassleriana HOM05D002505 ORTHO05D006559 1.8e-56 223.8 178 61.2
BcaB07g33312 Brassica carinata HOM05D002505 ORTHO05D006559 6.7e-56 221.9 171 61.4
Thhalv10011382m.g Eutrema salsugineum HOM05D002505 ORTHO05D006559 6.7e-56 221.9 171 61.4
PSO017G2893 Papaver somniferum HOM05D002505 ORTHO05D006559 8.7e-56 221.5 173 60.1
C06p09440 Brassica napus HOM05D001023 ORTHO05D006559 1.1e-55 221.1 171 61.4
CARHR043910 Cardamine hirsuta HOM05D002505 ORTHO05D006559 1.1e-55 221.1 318 41.8
EL10Ac5g10510 Beta vulgaris HOM05D002505 ORTHO05D006559 1.5e-55 220.7 314 44.9
BcaC08g43545 Brassica carinata HOM05D002505 ORTHO05D006559 3.3e-55 219.5 171 60.8
A06p00890 Brassica napus HOM05D001023 ORTHO05D006559 3.3e-55 219.5 171 60.2
BraA06t23318Z Brassica rapa HOM05D001023 ORTHO05D006559 3.3e-55 219.5 171 60.2
BolC6t36013H Brassica oleracea HOM05D001023 ORTHO05D006559 4.3e-55 219.2 171 60.8
Aa31LG10G1650 Aethionema arabicum HOM05D002505 ORTHO05D006559 9.6e-55 218.0 171 59.1
Dinv17234 Davidia involucrata HOM05D002505 ORTHO05D006559 9.6e-55 218.0 325 44.9
BcaB02g10898 Brassica carinata HOM05D002505 ORTHO05D006559 8.2e-54 214.9 171 60.2
SHI32899 Sapria himalayana HOM05D002505 ORTHO05D006559 4.0e-53 212.6 165 58.8
CDE02G1608 Ceratophyllum demersum HOM05D002505 ORTHO05D006559 1.2e-52 211.1 166 61.4
ECA246G4077 Erigeron canadensis HOM05D002505 ORTHO05D006559 1.5e-52 210.7 161 64.0
unitig_21.g20249 Utricularia gibba HOM05D002505 ORTHO05D006559 4.9e-51 205.7 165 58.8
Aqoxy1G00117 Aquilegia oxysepala HOM05D002505 ORTHO05D006559 6.5e-51 205.3 169 62.1
Zm00001eb060430 Zea mays HOM05D002505 ORTHO05D006559 7.9e-49 198.4 286 44.1
Os06g0664400 Oryza sativa ssp. japonica HOM05D002505 ORTHO05D006559 1.5e-47 194.1 171 55.0
Sabra15G0148600 Salix brachista HOM05D002505 ORTHO05D006559 1.4e-45 187.6 162 58.6
BolC6t36693H Brassica oleracea HOM05D002505 ORTHO05D006559 9.0e-45 184.9 295 40.3
QL04p094522 Quercus lobata HOM05D002505 ORTHO05D000632 7.2e-42 175.3 392 32.7
Haze_18498 Corylus avellana HOM05D002505 ORTHO05D006559 3.6e-41 172.9 103 79.6
C06p15180 Brassica napus HOM05D002505 ORTHO05D006559 5.7e-39 165.6 112 69.6
A05p18000 Brassica napus HOM05D002505 ORTHO05D006559 2.2e-38 163.7 150 56.0
BraA05t20694Z Brassica rapa HOM05D002505 ORTHO05D006559 2.2e-38 163.7 150 56.0
Glyma.15G135900 Glycine max HOM05D002505 ORTHO05D006559 1.0e-35 154.8 122 62.3
BcaC08g44112 Brassica carinata HOM05D002505 ORTHO05D006559 6.3e-30 135.6 226 40.3
CSS0015020 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 1.1e-26 124.8 280 35.4
Thhalv10012156m.g Eutrema salsugineum HOM05D002505 ORTHO05D006559 1.2e-25 121.3 80 71.2
Ah.13g066500 Amaranthus hybridus HOM05D002505 ORTHO05D006559 2.1e-25 120.6 100 63.0
Mapoly0043s0004 Marchantia polymorpha HOM05D002505 ORTHO05D006559 4.8e-22 109.4 137 39.4
QL04p094482 Quercus lobata HOM05D000280 ORTHO05D006559 2.6e-20 103.6 63 81.0
Ah.07g202770 Amaranthus hybridus HOM05D002505 ORTHO05D006559 5.9e-20 102.4 64 79.7
RcHm_v2.0_Chr5g0023281 Rosa chinensis HOM05D002505 ORTHO05D006559 1.0e-19 101.7 62 82.3
Haze_18499 Corylus avellana HOM05D002505 ORTHO05D006559 1.7e-19 100.9 62 79.0
Pp3c12_26140 Physcomitrium patens HOM05D002505 ORTHO05D006559 1.7e-19 100.9 125 40.8
Dinv29488 Davidia involucrata HOM05D002505 ORTHO05D006559 2.2e-19 100.5 63 77.8
AagrBONN_evm.TU.Sc2ySwM_228.276 Anthoceros agrestis HOM05D002505 ORTHO05D006559 9.4e-18 95.1 125 36.8
Ah.13g066490 Amaranthus hybridus HOM05D002505 ORTHO05D006559 1.2e-17 94.7 64 78.1
Actinidia26206 Actinidia chinensis HOM05D002505 ORTHO05D006559 6.1e-17 92.4 56 82.1
Actinidia26205 Actinidia chinensis HOM05D002505 ORTHO05D006559 8.5e-11 72.0 211 32.7
COL.COLO4_21461 Corchorus olitorius HOM05D002505 ORTHO05D006559 2.5e-10 70.5 241 27.0
SEGI_13390 Sequoiadendron giganteum HOM05D002505 ORTHO05D006559 2.8e-06 57.0 56 48.2


User provided reference genes

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