Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1C175T4 Lonicera japonica HOM05D003848 ORTHO05D004616 1.0e-184 650.6 515 100.0
Lj2C1116T3 Lonicera japonica HOM05D003848 ORTHO05D004616 2.8e-166 589.3 516 94.8
vmacro19513 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 3.6e-89 333.2 526 64.1
CiPaw.08G106300 Carya illinoinensis HOM05D003848 ORTHO05D004616 9.8e-87 325.1 535 60.6
Cc00_g04130 Coffea canephora HOM05D003848 ORTHO05D004616 9.8e-87 325.1 493 65.1
SGA_v2.0_scaffold1G00491 Striga asiatica HOM05D003848 ORTHO05D004616 1.3e-86 324.7 514 70.6
Cc01_g10690 Coffea canephora HOM05D003848 ORTHO05D004616 1.8e-85 320.9 588 59.9
Nitab4.5_0005156g0010 Nicotiana tabacum HOM05D003848 ORTHO05D004616 1.8e-85 320.9 433 69.1
Hma1.2p1_0822F.1_g224390 Hydrangea macrophylla HOM05D003848 ORTHO05D004616 2.7e-84 317.0 531 58.0
Potri.002G051500 Populus trichocarpa HOM05D003848 ORTHO05D004616 2.7e-84 317.0 519 65.9
Oeu041715.2 Olea europaea HOM05D003848 ORTHO05D004616 4.5e-84 316.2 534 59.6
vmacro18863 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 1.0e-83 315.1 527 63.4
Solyc11g071660.1 Solanum lycopersicum HOM05D003848 ORTHO05D004616 1.7e-83 314.3 543 59.9
Lj1A173G45 Lonicera japonica HOM05D003848 ORTHO05D004616 5.0e-83 312.8 166 95.2
Sopen11g029330 Solanum pennellii HOM05D003848 ORTHO05D004616 6.6e-83 312.4 543 59.7
PGSC0003DMG400046756 Solanum tuberosum HOM05D003848 ORTHO05D004616 6.6e-83 312.4 545 62.8
MSTRG.21553 Avicennia marina HOM05D003848 ORTHO05D004616 2.1e-81 307.4 572 55.9
Nitab4.5_0006700g0010 Nicotiana tabacum HOM05D003848 ORTHO05D004616 2.8e-81 307.0 431 73.3
Lsat_1_v5_gn_5_184160 Lactuca sativa HOM05D003848 ORTHO05D004616 8.0e-81 305.4 547 62.0
GSVIVG01001165001 Vitis vinifera HOM05D003848 ORTHO05D004616 8.0e-81 305.4 515 60.0
Dinv32920 Davidia involucrata HOM05D003848 ORTHO05D004616 1.4e-80 304.7 422 63.0
Actinidia24902 Actinidia chinensis HOM05D003848 ORTHO05D004616 2.3e-80 303.9 533 65.9
Glyma.10G027400 Glycine max HOM05D003848 ORTHO05D004616 2.3e-80 303.9 519 67.2
Nn1g02285 Nelumbo nucifera HOM05D003848 ORTHO05D004616 3.0e-80 303.5 545 62.2
Phvul.007G172800 Phaseolus vulgaris HOM05D003848 ORTHO05D004616 5.2e-80 302.8 517 63.1
VMungo0720G2447 Vigna mungo HOM05D003848 ORTHO05D004616 1.5e-79 301.2 517 62.1
Psat4g156760 Pisum sativum HOM05D003848 ORTHO05D004616 2.0e-79 300.8 518 62.9
Migut.D00312 Erythranthe guttata HOM05D003848 ORTHO05D004616 5.7e-79 299.3 557 61.6
CAN.G439.4 Capsicum annuum HOM05D003848 ORTHO05D004616 1.7e-78 297.7 516 56.0
Cfa006159 Carpinus fangiana HOM05D003848 ORTHO05D004616 1.7e-78 297.7 520 66.5
Glyma.02G146600 Glycine max HOM05D003848 ORTHO05D004616 1.7e-78 297.7 521 67.9
DCAR_000720 Daucus carota HOM05D003848 ORTHO05D004616 2.8e-78 297.0 549 62.5
Peaxi162Scf00217g00025 Petunia axillaris HOM05D003848 ORTHO05D004616 2.8e-78 297.0 525 64.6
Lj5g0005692 Lotus japonicus HOM05D003848 ORTHO05D004616 3.7e-78 296.6 512 60.9
HanXRQChr01g0002971 Helianthus annuus HOM05D003848 ORTHO05D004616 4.9e-78 296.2 583 60.2
Oeu028073.1 Olea europaea HOM05D003848 ORTHO05D004616 1.1e-77 295.0 533 55.7
TAR369G1095 Trochodendron aralioides HOM05D003848 ORTHO05D004616 1.1e-77 295.0 540 60.7
Cfa003508 Carpinus fangiana HOM05D003848 ORTHO05D004616 2.4e-77 293.9 529 59.7
arahy.Tifrunner.gnm1.ann1.ARWK2P Arachis hypogaea HOM05D003848 ORTHO05D004616 9.2e-77 292.0 547 64.4
arahy.Tifrunner.gnm1.ann1.X3NAFX Arachis hypogaea HOM05D003848 ORTHO05D004616 1.2e-76 291.6 542 59.8
Manes.05G077600 Manihot esculenta HOM05D003848 ORTHO05D004616 1.2e-76 291.6 530 59.2
Prupe.8G239200 Prunus persica HOM05D003848 ORTHO05D004616 1.2e-76 291.6 552 58.9
TWI59G1147 Tripterygium wilfordii HOM05D003848 ORTHO05D004616 3.5e-76 290.0 521 64.1
MBI07_g03188_MAGBIO Magnolia biondii HOM05D003848 ORTHO05D004616 5.9e-76 289.3 556 51.4
Medtr8g028640 Medicago truncatula HOM05D003848 ORTHO05D004616 5.9e-76 289.3 515 66.8
Haze_04691 Corylus avellana HOM05D003848 ORTHO05D004616 7.8e-76 288.9 523 64.2
Cpa.g.sc52.49 Carica papaya HOM05D003848 ORTHO05D004616 1.1e-74 285.0 534 62.5
Haze_16066 Corylus avellana HOM05D003848 ORTHO05D004616 1.5e-74 284.6 512 61.7
Rhsim01G0273900 Rhododendron simsii HOM05D003848 ORTHO05D004616 1.9e-74 284.3 569 56.6
Thecc.01G276600 Theobroma cacao HOM05D003848 ORTHO05D004616 1.9e-74 284.3 544 63.6
QL01p012613 Quercus lobata HOM05D003848 ORTHO05D004616 2.5e-74 283.9 525 58.9
COL.COLO4_09072 Corchorus olitorius HOM05D003848 ORTHO05D004616 3.3e-74 283.5 550 46.5
Ca_09749_v3 Cicer arietinum L. HOM05D003848 ORTHO05D004616 4.3e-74 283.1 534 70.2
PGR119G0967 Punica granatum HOM05D003848 ORTHO05D004616 5.6e-74 282.7 559 63.5
Atru.chr5.1462 Acer truncatum HOM05D003848 ORTHO05D004616 9.5e-74 282.0 504 60.9
Lalb_Chr06g0162931 Lupinus albus HOM05D003848 ORTHO05D004616 1.6e-73 281.2 536 62.5
unitig_0.g1040 Utricularia gibba HOM05D003848 ORTHO05D004616 1.6e-73 281.2 512 53.9
Gohir.A12G004500 Gossypium hirsutum HOM05D003848 ORTHO05D004616 2.1e-73 280.8 602 60.5
Sabra05G0161100 Salix brachista HOM05D003848 ORTHO05D004616 2.8e-73 280.4 518 61.0
Ciclev10019827m.g Citrus clementina HOM05D003848 ORTHO05D004616 3.6e-73 280.0 526 63.7
MELO3C009735.2 Cucumis melo HOM05D003848 ORTHO05D004616 3.6e-73 280.0 547 63.1
Potri.005G210900 Populus trichocarpa HOM05D003848 ORTHO05D004616 3.6e-73 280.0 515 61.7
RcHm_v2.0_Chr4g0409951 Rosa chinensis HOM05D003848 ORTHO05D004616 4.7e-73 279.6 529 60.5
TAR633G0718 Trochodendron aralioides HOM05D003848 ORTHO05D004616 4.7e-73 279.6 553 63.8
FAN07G0259 Fragaria x ananassa HOM05D003848 ORTHO05D004616 6.1e-73 279.3 547 61.4
Aqoxy2G03377 Aquilegia oxysepala HOM05D003848 ORTHO05D004616 8.0e-73 278.9 546 56.6
FvH4_4g12190 Fragaria vesca HOM05D003848 ORTHO05D004616 1.4e-72 278.1 547 60.7
TPR.G28157 Trifolium pratense HOM05D003848 ORTHO05D004616 1.4e-72 278.1 175 81.7
ATR0824G270 Amborella trichopoda HOM05D003848 ORTHO05D004616 2.3e-72 277.3 182 78.6
Gorai.008G004000 Gossypium raimondii HOM05D003848 ORTHO05D004616 2.3e-72 277.3 598 60.7
CsaV3_3G039920 Cucumis sativus L. HOM05D003848 ORTHO05D004616 3.1e-72 276.9 549 63.6
ATR0332G007 Amborella trichopoda HOM05D003848 ORTHO05D004616 5.2e-72 276.2 173 81.5
CANSAT01G1819 Cannabis sativa HOM05D003848 ORTHO05D004616 5.2e-72 276.2 178 82.0
Gohir.D12G004200 Gossypium hirsutum HOM05D003848 ORTHO05D004616 6.8e-72 275.8 598 60.9
MD11G1283600 Malus domestica HOM05D003848 ORTHO05D004616 8.9e-72 275.4 551 59.3
ClCG10G016420 Citrullus lanatus HOM05D003848 ORTHO05D004616 1.5e-71 274.6 545 66.4
FAN22G1557 Fragaria x ananassa HOM05D003848 ORTHO05D004616 2.6e-71 273.9 184 79.3
THA.LOC104801238 Tarenaya hassleriana HOM05D003848 ORTHO05D004616 5.8e-71 272.7 433 72.7
SHI27493 Sapria himalayana HOM05D004058 ORTHO05D001984 3.7e-70 270.0 173 78.0
ECA248G3600 Erigeron canadensis HOM05D003848 ORTHO05D004616 8.3e-70 268.9 534 58.2
SEGI_20713 Sequoiadendron giganteum HOM05D003848 ORTHO05D004616 1.1e-69 268.5 185 76.2
THA.LOC104825995 Tarenaya hassleriana HOM05D003848 ORTHO05D004616 4.1e-69 266.5 159 83.0
CDE06G2067 Ceratophyllum demersum HOM05D003848 ORTHO05D004616 9.2e-69 265.4 163 81.6
Sc24g0003320 Simmondsia chinensis HOM05D003848 ORTHO05D004616 1.2e-68 265.0 562 61.6
HPP92_009020 Vanilla planifolia HOM05D003848 ORTHO05D004616 3.5e-68 263.5 502 50.6
MD03G1262900 Malus domestica HOM05D003848 ORTHO05D004616 6.0e-68 262.7 543 60.8
FAN17G2080 Fragaria x ananassa HOM05D003848 ORTHO05D004616 7.8e-68 262.3 545 60.2
AagrBONN_evm.TU.Sc2ySwM_362.1784 Anthoceros agrestis HOM05D003848 ORTHO05D004616 1.0e-67 261.9 184 75.5
AUR62017852 Chenopodium quinoa HOM05D003848 ORTHO05D004616 1.7e-67 261.2 178 77.5
Manes.01G206800 Manihot esculenta HOM05D003848 ORTHO05D004616 6.6e-67 259.2 519 50.1
AUR62003538 Chenopodium quinoa HOM05D003848 ORTHO05D004616 8.6e-67 258.8 167 79.6
Aa31LG5G2360 Aethionema arabicum HOM05D003848 ORTHO05D004616 1.1e-66 258.5 431 69.1
Mapoly0051s0007 Marchantia polymorpha HOM05D003848 ORTHO05D004616 1.1e-66 258.5 167 79.6
PSO210G3188 Papaver somniferum HOM05D003848 ORTHO05D004616 1.9e-66 257.7 164 81.1
Ah.02g110950 Amaranthus hybridus HOM05D003848 ORTHO05D004616 3.3e-66 256.9 165 81.2
Zm00001eb314820 Zea mays HOM05D003848 ORTHO05D004616 4.3e-66 256.5 152 84.2
EL10Ac5g10556 Beta vulgaris HOM05D003848 ORTHO05D004616 2.8e-65 253.8 522 65.9
Pp3c9_17960 Physcomitrium patens HOM05D003848 ORTHO05D004616 6.2e-65 252.7 157 80.3
Carub.0006s3439 Capsella rubella HOM05D003848 ORTHO05D004616 1.1e-64 251.9 426 72.1
AL6G50290 Arabidopsis lyrata HOM05D003848 ORTHO05D004616 1.4e-64 251.5 427 68.6
Sed0011367 Sechium edule HOM05D003848 ORTHO05D004616 1.4e-64 251.5 538 59.3
AT4G02720 Arabidopsis thaliana HOM05D003848 ORTHO05D004616 1.8e-64 251.1 427 69.8
Sp6g02650 Schrenkiella parvula HOM05D003848 ORTHO05D004616 1.8e-64 251.1 423 72.1
SMO231G0049 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 1.8e-64 251.1 167 77.2
CARHR251050 Cardamine hirsuta HOM05D003848 ORTHO05D004616 5.2e-64 249.6 165 78.2
SMO351G0411 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 5.2e-64 249.6 156 80.1
Hund11854 Selenicereus undatus HOM05D003848 ORTHO05D004616 5.2e-64 249.6 172 77.3
AagrBONN_evm.TU.Sc2ySwM_344.5133 Anthoceros agrestis HOM05D003848 ORTHO05D004616 1.5e-63 248.1 152 82.9
Thhalv10028691m.g Eutrema salsugineum HOM05D003848 ORTHO05D004616 1.5e-63 248.1 423 70.4
CBR_g4136 Chara braunii HOM05D003848 ORTHO05D004616 3.4e-63 246.9 158 79.7
PSO832G2619 Papaver somniferum HOM05D003848 ORTHO05D004616 3.4e-63 246.9 562 52.1
BcaC01g01560 Brassica carinata HOM05D003848 ORTHO05D004616 4.4e-63 246.5 169 74.6
C03p93080 Brassica napus HOM05D003848 ORTHO05D004616 3.7e-62 243.4 170 74.1
BcaB01g02014 Brassica carinata HOM05D003848 ORTHO05D004616 1.4e-61 241.5 422 61.4
C03p93150 Brassica napus HOM05D003848 ORTHO05D004616 4.1e-61 240.0 156 78.2
FAN22G0164 Fragaria x ananassa HOM05D003848 ORTHO05D004616 2.1e-60 237.7 530 59.4
A09p02120 Brassica napus HOM05D003848 ORTHO05D004616 2.7e-60 237.3 135 85.9
BraA09t35861Z Brassica rapa HOM05D003848 ORTHO05D004616 2.7e-60 237.3 135 85.9
Duzib177G1090 Durio zibethinus HOM05D003848 ORTHO05D004616 6.0e-60 236.1 170 73.5
C08p37610 Brassica napus HOM05D003848 ORTHO05D004616 1.0e-59 235.3 134 85.8
BolC9t53150H Brassica oleracea HOM05D003848 ORTHO05D004616 1.0e-59 235.3 134 85.8
BcaC01g01554 Brassica carinata HOM05D003848 ORTHO05D004616 3.9e-59 233.4 133 85.7
BolC8t51344H Brassica oleracea HOM05D003848 ORTHO05D004616 5.1e-59 233.0 436 56.9
C03p93070 Brassica napus HOM05D003848 ORTHO05D004616 1.1e-58 231.9 132 86.4
Rhsim10G0030500 Rhododendron simsii HOM05D003848 ORTHO05D004616 1.5e-58 231.5 147 82.3
BcaC04g24009 Brassica carinata HOM05D003848 ORTHO05D004616 3.3e-58 230.3 134 84.3
C03p93100 Brassica napus HOM05D003848 ORTHO05D004616 3.3e-58 230.3 133 85.0
BcaC01g01558 Brassica carinata HOM05D003848 ORTHO05D004616 2.1e-57 227.6 132 84.8
BolC3t21610H Brassica oleracea HOM05D003848 ORTHO05D004616 2.1e-57 227.6 124 89.5
QL03p072399 Quercus lobata HOM05D003848 ORTHO05D004616 3.6e-57 226.9 511 48.9
BolC3t21613H Brassica oleracea HOM05D003848 ORTHO05D004616 1.4e-56 224.9 133 82.7
A09p54740 Brassica napus HOM05D003848 ORTHO05D004616 1.8e-56 224.6 129 85.3
A04p19390 Brassica napus HOM05D003848 ORTHO05D004616 3.1e-56 223.8 177 71.2
C09p02220 Brassica napus HOM05D003848 ORTHO05D004616 6.8e-56 222.6 161 73.3
C09p02210 Brassica napus HOM05D003848 ORTHO05D004616 1.2e-55 221.9 129 84.5
A09p30470 Brassica napus HOM05D003848 ORTHO05D004616 1.5e-55 221.5 132 82.6
BraA04t17534Z Brassica rapa HOM05D003848 ORTHO05D004616 5.8e-55 219.5 182 68.1
BcaC01g01561 Brassica carinata HOM05D003848 ORTHO05D004616 1.7e-54 218.0 130 82.3
TPR.G23082 Trifolium pratense HOM05D003848 ORTHO05D004616 3.7e-54 216.9 135 83.7
C04p54970 Brassica napus HOM05D003848 ORTHO05D004616 5.4e-53 213.0 152 75.0
BolC4t27032H Brassica oleracea HOM05D003848 ORTHO05D004616 5.4e-53 213.0 152 75.0
BcaC02g08380 Brassica carinata HOM05D003848 ORTHO05D004616 1.2e-52 211.8 165 70.9
SalBow4G2167 Salvia bowleyana HOM05D003848 ORTHO05D004616 3.3e-50 203.8 180 63.9
arahy.Tifrunner.gnm1.ann1.3GG3GM Arachis hypogaea HOM05D004461 ORTHO05D005543 1.1e-48 198.7 368 71.7
CDE07G1463 Ceratophyllum demersum HOM05D003848 ORTHO05D004616 1.4e-48 198.4 161 64.6
SGA_v2.0_scaffold138G35328 Striga asiatica HOM05D003848 ORTHO05D004616 4.4e-47 193.4 164 66.5
Ca_04836_v3 Cicer arietinum L. HOM05D001515 ORTHO05D004616 8.4e-46 189.1 112 84.8
Nn4g26302 Nelumbo nucifera HOM05D003848 ORTHO05D004616 2.5e-42 177.6 99 88.9
BcaC03g13677 Brassica carinata HOM05D003848 ORTHO05D004616 1.6e-41 174.9 132 70.5
C03p93140 Brassica napus HOM05D003848 ORTHO05D004616 1.8e-40 171.4 121 75.2
MCO02G035 Micromonas commoda HOM05D003848 ORTHO05D004616 2.4e-40 171.0 106 82.1
Oeu017054.1 Olea europaea HOM05D004271 ORTHO05D006011 9.0e-40 169.1 135 70.4
BcaC03g16168 Brassica carinata HOM05D003848 ORTHO05D004616 3.8e-38 163.7 103 77.7
Hma1.2p1_0667F.1_g199770 Hydrangea macrophylla HOM05D003848 ORTHO05D004616 3.8e-38 163.7 164 59.1
PRCOL_00001828 Prasinoderma coloniale HOM05D003848 ORTHO05D004616 3.3e-34 150.6 105 70.5
Cre01.g032250 Chlamydomonas reinhardtii HOM05D003848 ORTHO05D004616 8.1e-33 146.0 100 69.0
BraA09t40884Z Brassica rapa HOM05D003848 ORTHO05D004616 2.0e-31 141.4 84 82.1
BraA09t38617Z Brassica rapa HOM05D003848 ORTHO05D004616 1.3e-30 138.7 84 81.0
Haze_27548 Corylus avellana HOM05D003848 ORTHO05D004616 5.4e-29 133.3 112 55.4
Actinidia21120 Actinidia chinensis HOM05D003848 ORTHO05D004616 1.6e-28 131.7 162 50.6
Os09g0455400 Oryza sativa ssp. japonica HOM05D003848 ORTHO05D004616 4.6e-28 130.2 70 92.9
C02p39120 Brassica napus HOM05D003848 ORTHO05D004616 8.7e-27 125.9 84 73.8
BolC2t09922H Brassica oleracea HOM05D003848 ORTHO05D004616 2.5e-26 124.4 84 72.6
unitig_0.g1042 Utricularia gibba HOM05D003848 ORTHO05D004616 3.1e-24 117.5 66 87.9
vmacro19512 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 9.0e-24 115.9 518 42.3
BNapus_Darmor_BZH_scaffold_38p02440 Brassica napus HOM05D003848 ORTHO05D004616 2.2e-22 111.3 68 79.4
BNapus_Darmor_BZH_scaffold_38p02460 Brassica napus HOM05D003848 ORTHO05D004616 1.1e-21 109.0 67 79.1
FAN22G1718 Fragaria x ananassa HOM05D003848 ORTHO05D004616 1.0e-19 102.4 454 54.2
BolC2t06954H Brassica oleracea HOM05D003848 ORTHO05D004616 2.3e-19 101.3 68 75.0
MD07G1100600 Malus domestica HOM05D003848 ORTHO05D004616 3.7e-17 94.0 56 85.7
Ca_05843_v3 Cicer arietinum L. HOM05D003848 ORTHO05D004616 6.9e-16 89.7 54 83.3
Prupe.6G167600 Prunus persica HOM05D003848 ORTHO05D004616 2.9e-14 84.3 56 76.8
C03p93060 Brassica napus HOM05D003848 ORTHO05D004616 3.3e-10 70.9 72 52.8
BolC3t21614H Brassica oleracea HOM05D003848 ORTHO05D004616 4.8e-09 67.0 50 70.0
BcaC01g01557 Brassica carinata HOM05D003848 ORTHO05D004616 1.4e-08 65.5 52 65.4
FAN22G0082 Fragaria x ananassa HOM05D003848 ORTHO05D035678 9.0e-08 62.8 194 35.1
BraA09t40883Z Brassica rapa HOM05D003848 ORTHO05D004616 1.0e-06 59.3 62 54.8


User provided reference genes

Program Settings