Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1C1244T2 Lonicera japonica HOM05D004603 ORTHO05D005244 9.0e-44 179.9 91 100.0
Lj1A1244T16 Lonicera japonica HOM05D004603 ORTHO05D005244 1.9e-41 172.2 91 96.7
Lj9A646T46 Lonicera japonica HOM05D004603 ORTHO05D005244 1.9e-41 172.2 91 96.7
Dinv32050 Davidia involucrata HOM05D004603 ORTHO05D005244 9.3e-17 90.1 89 57.3
QL04p013733 Quercus lobata HOM05D004603 ORTHO05D005244 4.6e-16 87.8 90 56.7
Haze_03089 Corylus avellana HOM05D004603 ORTHO05D005244 1.8e-15 85.9 90 51.1
Ciclev10032728m.g Citrus clementina HOM05D004603 ORTHO05D005244 2.3e-15 85.5 89 52.8
Cfa010862 Carpinus fangiana HOM05D004603 ORTHO05D005244 1.9e-14 82.4 90 48.9
CiPaw.13G010800 Carya illinoinensis HOM05D004603 ORTHO05D005244 9.7e-14 80.1 90 50.0
Medtr4g071040 Medicago truncatula HOM05D004603 ORTHO05D005244 1.7e-13 79.3 85 50.6
Lalb_Chr19g0138841 Lupinus albus HOM05D004603 ORTHO05D005244 4.8e-13 77.8 87 54.0
Ciclev10017990m.g Citrus clementina HOM05D004603 ORTHO05D005244 1.8e-12 75.9 89 49.4
QL02p069618 Quercus lobata HOM05D004603 ORTHO05D005244 2.4e-12 75.5 90 50.0
Phvul.010G125900 Phaseolus vulgaris HOM05D004603 ORTHO05D005244 3.1e-12 75.1 86 47.7
CiPaw.14G006000 Carya illinoinensis HOM05D004603 ORTHO05D005244 5.3e-12 74.3 90 47.8
Glyma.11G113600 Glycine max HOM05D004603 ORTHO05D005244 6.9e-12 73.9 86 47.7
GSVIVG01022405001 Vitis vinifera HOM05D004603 ORTHO05D005244 6.9e-12 73.9 89 43.8
Hma1.2p1_0902F.1_g234830 Hydrangea macrophylla HOM05D004603 ORTHO05D005244 2.0e-11 72.4 89 44.9
Lj2g0001718 Lotus japonicus HOM05D004603 ORTHO05D005244 3.4e-11 71.6 85 44.7
Duzib114G1022 Durio zibethinus HOM05D004603 ORTHO05D005244 4.5e-11 71.2 87 47.1
VMungo1127G1982 Vigna mungo HOM05D004603 ORTHO05D005244 7.7e-11 70.5 86 46.5
VMungo1127G0155 Vigna mungo HOM05D004603 ORTHO05D005244 1.0e-10 70.1 86 46.5
Ca_20912_v3 Cicer arietinum L. HOM05D004603 ORTHO05D005244 1.7e-10 69.3 85 47.1
Potri.003G201500 Populus trichocarpa HOM05D004603 ORTHO05D005244 2.2e-10 68.9 89 42.7
Rhsim07G0062700 Rhododendron simsii HOM05D004603 ORTHO05D005244 2.9e-10 68.6 90 42.2
Cpa.g.sc197.6 Carica papaya HOM05D004603 ORTHO05D005244 3.8e-10 68.2 89 40.4
ClCG05G020790 Citrullus lanatus HOM05D004603 ORTHO05D005244 3.8e-10 68.2 82 41.5
DCAR_031824 Daucus carota HOM05D004603 ORTHO05D005244 3.8e-10 68.2 88 42.0
Glyma.12G039500 Glycine max HOM05D004603 ORTHO05D005244 3.8e-10 68.2 86 45.3
Potri.001G024000 Populus trichocarpa HOM05D004603 ORTHO05D005244 5.0e-10 67.8 88 38.6
CSS0012283 Camellia sinensis var. sinensis HOM05D004603 ORTHO05D005244 6.5e-10 67.4 89 47.2
Lj3g0020788 Lotus japonicus HOM05D004603 ORTHO05D005244 6.5e-10 67.4 85 42.4
MSTRG.20534 Avicennia marina HOM05D004603 ORTHO05D005244 8.5e-10 67.0 89 43.8
CSS0050281 Camellia sinensis var. sinensis HOM05D004603 ORTHO05D005244 8.5e-10 67.0 89 47.2
PGR031G2747 Punica granatum HOM05D004603 ORTHO05D005244 2.5e-09 65.5 88 39.8
SGA_v2.0_scaffold119G32802 Striga asiatica HOM05D004603 ORTHO05D005244 3.2e-09 65.1 80 46.2
TPR.G30506 Trifolium pratense HOM05D004603 ORTHO05D005244 3.2e-09 65.1 85 42.4
Thecc.10G006000 Theobroma cacao HOM05D004603 ORTHO05D005244 4.2e-09 64.7 87 43.7
arahy.Tifrunner.gnm1.ann1.30UV9I Arachis hypogaea HOM05D004603 ORTHO05D005244 5.5e-09 64.3 85 42.4
arahy.Tifrunner.gnm1.ann1.S7XKIQ Arachis hypogaea HOM05D004603 ORTHO05D005244 5.5e-09 64.3 85 42.4
Psat7g182960 Pisum sativum HOM05D004603 ORTHO05D005244 5.5e-09 64.3 85 40.0
RcHm_v2.0_Chr1g0319701 Rosa chinensis HOM05D004603 ORTHO05D005244 5.5e-09 64.3 88 46.6
Oeu062071.1 Olea europaea HOM05D004603 ORTHO05D005244 9.4e-09 63.5 88 38.6
Sabra01G0018000 Salix brachista HOM05D004603 ORTHO05D005244 9.4e-09 63.5 88 36.4
Actinidia21527 Actinidia chinensis HOM05D004603 ORTHO05D005244 1.2e-08 63.2 90 43.3
Atru.chr11.2466 Acer truncatum HOM05D004603 ORTHO05D005244 1.6e-08 62.8 85 40.0
Atru.chr11.2495 Acer truncatum HOM05D004603 ORTHO05D005244 1.6e-08 62.8 85 40.0
arahy.Tifrunner.gnm1.ann1.FEA8VP Arachis hypogaea HOM05D004603 ORTHO05D005244 1.6e-08 62.8 85 41.2
Sed0010230 Sechium edule HOM05D004603 ORTHO05D005244 2.1e-08 62.4 89 37.1
Duzib128G1390 Durio zibethinus HOM05D004603 ORTHO05D005244 4.7e-08 61.2 86 36.0
TAR053G0004 Trochodendron aralioides HOM05D004603 ORTHO05D005244 6.1e-08 60.8 89 40.4
TAR369G0595 Trochodendron aralioides HOM05D004603 ORTHO05D005244 6.1e-08 60.8 90 42.2
FAN06G0782 Fragaria x ananassa HOM05D000001 ORTHO05D009083 1.0e-07 60.1 87 46.0
Gorai.012G080400 Gossypium raimondii HOM05D004603 ORTHO05D005244 1.0e-07 60.1 87 42.5
Prupe.2G029400 Prunus persica HOM05D004603 ORTHO05D005244 1.0e-07 60.1 87 37.9
FAN01G0231 Fragaria x ananassa HOM05D000001 ORTHO05D009083 1.4e-07 59.7 87 46.0
FAN10G0154 Fragaria x ananassa HOM05D004603 ORTHO05D005244 1.4e-07 59.7 87 46.0
Gohir.D04G071400 Gossypium hirsutum HOM05D004603 ORTHO05D005244 1.4e-07 59.7 87 42.5
Cc02_g29120 Coffea canephora HOM05D004603 ORTHO05D005244 1.8e-07 59.3 87 37.9
COL.COLO4_25832 Corchorus olitorius HOM05D004603 ORTHO05D005244 2.3e-07 58.9 86 40.7
ECA248G3322 Erigeron canadensis HOM05D004603 ORTHO05D005244 2.3e-07 58.9 82 39.0
Gohir.A05G333100 Gossypium hirsutum HOM05D004603 ORTHO05D005244 2.3e-07 58.9 87 42.5
SalBow5G1211 Salvia bowleyana HOM05D004603 ORTHO05D005244 2.3e-07 58.9 87 35.6
FAN03G3254 Fragaria x ananassa HOM05D004603 ORTHO05D005244 3.0e-07 58.5 87 44.8
SalBow5G1267 Salvia bowleyana HOM05D004603 ORTHO05D005244 3.0e-07 58.5 87 35.6
vmacro13728 Vaccinium macrocarpon HOM05D004603 ORTHO05D005244 3.9e-07 58.2 90 40.0
Migut.B01205 Erythranthe guttata HOM05D004603 ORTHO05D005244 5.1e-07 57.8 87 37.9
ECA248G0821 Erigeron canadensis HOM05D004603 ORTHO05D005244 6.7e-07 57.4 82 37.8
Eucgr.G03257 Eucalyptus grandis HOM05D004603 ORTHO05D005244 6.7e-07 57.4 91 35.2
CANSAT35G1099 Cannabis sativa HOM05D004603 ORTHO05D005244 8.8e-07 57.0 89 38.2
Ca_14312_v3 Cicer arietinum L. HOM05D004603 ORTHO05D005244 8.8e-07 57.0 85 43.5
Manes.11G002700 Manihot esculenta HOM05D004603 ORTHO05D005244 8.8e-07 57.0 88 38.6
TWI38G0287 Tripterygium wilfordii HOM05D004603 ORTHO05D005244 1.5e-06 56.2 90 40.0
Atru.chr11.786 Acer truncatum HOM05D004603 ORTHO05D005244 2.0e-06 55.8 85 36.5
Sed0015753 Sechium edule HOM05D004603 ORTHO05D005244 3.3e-06 55.1 89 34.8
TPR.G3881 Trifolium pratense HOM05D004603 ORTHO05D005244 5.7e-06 54.3 85 41.2
EL10Ac2g02852 Beta vulgaris HOM05D004603 ORTHO05D005244 9.7e-06 53.5 89 33.7


User provided reference genes

Program Settings