Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1C1240G8 Lonicera japonica HOM05D003856 ORTHO05D004547 2.5e-190 668.7 353 100.0
Rhsim02G0099500 Rhododendron simsii HOM05D003856 ORTHO05D004547 1.4e-92 344.0 198 90.4
Cc09_g00840 Coffea canephora HOM05D003856 ORTHO05D004547 1.2e-91 340.9 198 89.9
TWI38G2230 Tripterygium wilfordii HOM05D003856 ORTHO05D004547 1.2e-91 340.9 198 89.9
Dinv07408 Davidia involucrata HOM05D003856 ORTHO05D004547 4.5e-91 339.0 198 90.9
Nitab4.5_0004406g0030 Nicotiana tabacum HOM05D003856 ORTHO05D004547 5.9e-91 338.6 198 89.4
CAN.G449.18 Capsicum annuum HOM05D003856 ORTHO05D004547 7.6e-91 338.2 198 88.4
Hma1.2p1_0657F.1_g197110 Hydrangea macrophylla HOM05D003856 ORTHO05D004547 7.6e-91 338.2 198 89.9
Solyc05g054100.3 Solanum lycopersicum HOM05D003856 ORTHO05D004547 1.0e-90 337.8 198 88.4
Sopen05g032590 Solanum pennellii HOM05D003856 ORTHO05D004547 1.0e-90 337.8 198 88.4
PGSC0003DMG400008443 Solanum tuberosum HOM05D003856 ORTHO05D004547 1.0e-90 337.8 198 88.4
Atru.chr1.2436 Acer truncatum HOM05D003856 ORTHO05D004547 2.2e-90 336.7 198 88.4
Atru.chr1.2438 Acer truncatum HOM05D003856 ORTHO05D004547 2.2e-90 336.7 198 88.4
Duzib235G1167 Durio zibethinus HOM05D003856 ORTHO05D004547 2.2e-90 336.7 198 89.4
Thecc.06G233900 Theobroma cacao HOM05D003856 ORTHO05D004547 2.2e-90 336.7 198 89.4
Actinidia02310 Actinidia chinensis HOM05D003856 ORTHO05D004547 2.9e-90 336.3 198 90.4
ECA248G1273 Erigeron canadensis HOM05D003856 ORTHO05D004547 6.5e-90 335.1 198 88.9
arahy.Tifrunner.gnm1.ann1.B5Z1I8 Arachis hypogaea HOM05D003856 ORTHO05D004547 1.1e-89 334.3 198 88.4
arahy.Tifrunner.gnm1.ann1.ZZ9Q5Y Arachis hypogaea HOM05D003856 ORTHO05D004547 1.1e-89 334.3 198 88.4
Actinidia26855 Actinidia chinensis HOM05D003856 ORTHO05D004547 1.4e-89 334.0 198 89.4
Glyma.18G075400 Glycine max HOM05D003856 ORTHO05D004547 1.4e-89 334.0 198 88.4
Phvul.006G059000 Phaseolus vulgaris HOM05D003856 ORTHO05D004547 1.4e-89 334.0 198 88.4
THA.LOC104812995 Tarenaya hassleriana HOM05D003856 ORTHO05D004547 1.4e-89 334.0 198 88.4
CiPaw.09G102800 Carya illinoinensis HOM05D003856 ORTHO05D004547 1.9e-89 333.6 198 89.4
Ca_10008_v3 Cicer arietinum L. HOM05D003856 ORTHO05D004547 1.9e-89 333.6 198 87.9
Potri.006G011500 Populus trichocarpa HOM05D003856 ORTHO05D004547 1.9e-89 333.6 198 87.4
Sc17g0007760 Simmondsia chinensis HOM05D003856 ORTHO05D004547 1.9e-89 333.6 198 88.9
arahy.Tifrunner.gnm1.ann1.D1JSNC Arachis hypogaea HOM05D003856 ORTHO05D004547 2.5e-89 333.2 198 87.9
arahy.Tifrunner.gnm1.ann1.GCV40F Arachis hypogaea HOM05D003856 ORTHO05D004547 2.5e-89 333.2 198 87.9
CANSAT56G3590 Cannabis sativa HOM05D003856 ORTHO05D004547 2.5e-89 333.2 198 88.4
Lalb_Chr06g0168331 Lupinus albus HOM05D003856 ORTHO05D004547 2.5e-89 333.2 198 87.9
FAN21G0260 Fragaria x ananassa HOM05D003856 ORTHO05D004547 3.2e-89 332.8 199 87.9
Lj2A261T38 Lonicera japonica HOM05D003856 ORTHO05D004547 3.2e-89 332.8 198 90.4
Manes.08G069500 Manihot esculenta HOM05D003856 ORTHO05D004547 3.2e-89 332.8 198 88.9
Sabra06G0009100 Salix brachista HOM05D003856 ORTHO05D004547 3.2e-89 332.8 198 87.4
Potri.016G013100 Populus trichocarpa HOM05D003856 ORTHO05D004547 5.5e-89 332.0 198 86.9
RcHm_v2.0_Chr5g0001451 Rosa chinensis HOM05D003856 ORTHO05D004547 5.5e-89 332.0 198 88.9
TAR626G0303 Trochodendron aralioides HOM05D003856 ORTHO05D004547 5.5e-89 332.0 198 88.4
VMungo0540G0895 Vigna mungo HOM05D003856 ORTHO05D004547 5.5e-89 332.0 198 87.9
Aqoxy1G04060 Aquilegia oxysepala HOM05D003856 ORTHO05D004547 7.2e-89 331.6 198 86.9
Duzib192G0794 Durio zibethinus HOM05D003856 ORTHO05D004547 7.2e-89 331.6 198 88.4
Lj5g0025471 Lotus japonicus HOM05D003856 ORTHO05D004547 7.2e-89 331.6 198 87.9
BcaB03g11729 Brassica carinata HOM05D003856 ORTHO05D004547 9.3e-89 331.3 198 88.4
BcaC01g00774 Brassica carinata HOM05D003856 ORTHO05D004547 9.3e-89 331.3 198 88.4
A08p15680 Brassica napus HOM05D003856 ORTHO05D004547 9.3e-89 331.3 198 88.4
BraA08t33548Z Brassica rapa HOM05D003856 ORTHO05D004547 9.3e-89 331.3 198 88.4
Ciclev10016420m.g Citrus clementina HOM05D003856 ORTHO05D004547 9.3e-89 331.3 198 88.4
Sabra16G0002300 Salix brachista HOM05D003856 ORTHO05D004547 9.3e-89 331.3 198 85.9
CiPaw.10G078300 Carya illinoinensis HOM05D003856 ORTHO05D004547 1.2e-88 330.9 198 88.4
Gohir.D10G008700 Gossypium hirsutum HOM05D003856 ORTHO05D004547 1.2e-88 330.9 198 88.4
Gorai.011G009500 Gossypium raimondii HOM05D003856 ORTHO05D004547 1.2e-88 330.9 198 88.4
FvH4_3g00930 Fragaria vesca HOM05D003856 ORTHO05D004547 1.6e-88 330.5 198 87.9
FAN25G1896 Fragaria x ananassa HOM05D003856 ORTHO05D004547 1.6e-88 330.5 198 87.9
Gohir.A10G009100 Gossypium hirsutum HOM05D003856 ORTHO05D004547 1.6e-88 330.5 198 87.9
Gohir.D10G008800 Gossypium hirsutum HOM05D003856 ORTHO05D004547 1.6e-88 330.5 198 87.9
Gorai.011G009600 Gossypium raimondii HOM05D003856 ORTHO05D004547 1.6e-88 330.5 198 87.9
C01p16660 Brassica napus HOM05D003856 ORTHO05D004547 2.1e-88 330.1 198 87.9
C03p84130 Brassica napus HOM05D003856 ORTHO05D004547 2.1e-88 330.1 198 87.9
BolC1t01613H Brassica oleracea HOM05D003856 ORTHO05D004547 2.1e-88 330.1 198 87.9
BolC3t20692H Brassica oleracea HOM05D003856 ORTHO05D004547 2.1e-88 330.1 198 87.9
Glyma.08G331200 Glycine max HOM05D003856 ORTHO05D004547 2.1e-88 330.1 198 87.4
Lsat_1_v5_gn_0_29081 Lactuca sativa HOM05D003856 ORTHO05D004547 2.1e-88 330.1 198 87.9
THA.LOC104813601 Tarenaya hassleriana HOM05D003856 ORTHO05D004547 2.1e-88 330.1 198 87.4
A09p26760 Brassica napus HOM05D003856 ORTHO05D004547 2.7e-88 329.7 198 87.9
C09p33910 Brassica napus HOM05D003856 ORTHO05D004547 2.7e-88 329.7 198 87.9
BolC9t56227H Brassica oleracea HOM05D003856 ORTHO05D004547 2.7e-88 329.7 198 87.9
BraA09t38248Z Brassica rapa HOM05D003856 ORTHO05D004547 2.7e-88 329.7 198 87.9
Lsat_1_v5_gn_4_61900 Lactuca sativa HOM05D003856 ORTHO05D004547 2.7e-88 329.7 198 87.4
Lalb_Chr02g0149201 Lupinus albus HOM05D003856 ORTHO05D004547 2.7e-88 329.7 198 87.4
SalBow8G1854 Salvia bowleyana HOM05D003856 ORTHO05D004547 2.7e-88 329.7 198 88.9
BcaC04g21245 Brassica carinata HOM05D003856 ORTHO05D004547 3.6e-88 329.3 198 87.9
Cfa010272 Carpinus fangiana HOM05D003856 ORTHO05D004547 3.6e-88 329.3 198 88.4
Migut.M01400 Erythranthe guttata HOM05D003856 ORTHO05D004547 3.6e-88 329.3 198 87.9
MBI16_g31714_MAGBIO Magnolia biondii HOM05D003856 ORTHO05D004547 3.6e-88 329.3 198 88.4
QL05p069616 Quercus lobata HOM05D003856 ORTHO05D004547 3.6e-88 329.3 198 87.4
Hund06997 Selenicereus undatus HOM05D003856 ORTHO05D004547 3.6e-88 329.3 198 86.9
TAR627G0499 Trochodendron aralioides HOM05D003856 ORTHO05D004547 3.6e-88 329.3 198 87.4
TAR627G1166 Trochodendron aralioides HOM05D003856 ORTHO05D004547 3.6e-88 329.3 198 87.4
Haze_06930 Corylus avellana HOM05D003856 ORTHO05D004547 4.6e-88 328.9 198 87.9
MD05G1358200 Malus domestica HOM05D003856 ORTHO05D004547 4.6e-88 328.9 198 88.4
MD10G1332300 Malus domestica HOM05D003856 ORTHO05D004547 4.6e-88 328.9 198 88.4
Cpa.g.sc75.112 Carica papaya HOM05D003856 ORTHO05D004547 6.1e-88 328.6 198 87.9
PGR004G0563 Punica granatum HOM05D003856 ORTHO05D004547 6.1e-88 328.6 198 87.4
AL7G31210 Arabidopsis lyrata HOM05D003856 ORTHO05D004547 7.9e-88 328.2 198 86.9
A01p13750 Brassica napus HOM05D003856 ORTHO05D004547 7.9e-88 328.2 198 87.4
BraA01t01320Z Brassica rapa HOM05D003856 ORTHO05D004547 7.9e-88 328.2 198 87.4
Eucgr.D01412 Eucalyptus grandis HOM05D003856 ORTHO05D004547 7.9e-88 328.2 198 87.4
HanXRQChr01g0006771 Helianthus annuus HOM05D003856 ORTHO05D004547 7.9e-88 328.2 198 87.4
Nn1g07399 Nelumbo nucifera HOM05D003856 ORTHO05D004547 7.9e-88 328.2 198 87.9
Thhalv10026090m.g Eutrema salsugineum HOM05D003856 ORTHO05D004547 1.3e-87 327.4 198 86.9
Gohir.A10G009000 Gossypium hirsutum HOM05D003856 ORTHO05D004547 1.8e-87 327.0 198 87.9
Nn1g03306 Nelumbo nucifera HOM05D003856 ORTHO05D004547 2.3e-87 326.6 198 87.4
SalBow1G0666 Salvia bowleyana HOM05D003856 ORTHO05D004547 2.3e-87 326.6 198 87.9
AT4G12590 Arabidopsis thaliana HOM05D003856 ORTHO05D004547 3.0e-87 326.2 198 85.9
EL10Ac8g20193 Beta vulgaris HOM05D003856 ORTHO05D004547 3.0e-87 326.2 198 86.9
CSS0032798 Camellia sinensis var. sinensis HOM05D003856 ORTHO05D004547 3.0e-87 326.2 198 87.4
HanXRQChr10g0285161 Helianthus annuus HOM05D003856 ORTHO05D004547 3.0e-87 326.2 198 85.9
Sp7g20520 Schrenkiella parvula HOM05D003856 ORTHO05D004547 3.0e-87 326.2 198 86.9
Psat6g143120 Pisum sativum HOM05D003856 ORTHO05D004547 3.9e-87 325.9 198 86.4
Prupe.4G009900 Prunus persica HOM05D003856 ORTHO05D004547 5.1e-87 325.5 198 88.4
Aa31LG9G10060 Aethionema arabicum HOM05D003856 ORTHO05D004547 6.7e-87 325.1 198 85.9
AL6G47550 Arabidopsis lyrata HOM05D003856 ORTHO05D004547 8.7e-87 324.7 198 85.4
BcaB01g01755 Brassica carinata HOM05D003856 ORTHO05D004547 8.7e-87 324.7 198 86.4
CsaV3_1G017260 Cucumis sativus L. HOM05D003856 ORTHO05D004547 8.7e-87 324.7 198 85.4
DCAR_004889 Daucus carota HOM05D003856 ORTHO05D004547 8.7e-87 324.7 199 87.4
Sed0028227 Sechium edule HOM05D003856 ORTHO05D004547 8.7e-87 324.7 198 85.4
Ah.14g087610 Amaranthus hybridus HOM05D003856 ORTHO05D004547 1.1e-86 324.3 198 85.9
ClCG01G010160 Citrullus lanatus HOM05D003856 ORTHO05D004547 1.1e-86 324.3 198 85.4
Medtr1g079890 Medicago truncatula HOM05D003856 ORTHO05D004547 1.9e-86 323.6 198 85.9
SGA_v2.0_scaffold4G01871 Striga asiatica HOM05D003856 ORTHO05D004547 2.5e-86 323.2 198 85.9
Nitab4.5_0001735g0170 Nicotiana tabacum HOM05D003856 ORTHO05D004547 4.3e-86 322.4 198 86.4
CDE06G2351 Ceratophyllum demersum HOM05D003856 ORTHO05D004547 5.7e-86 322.0 198 85.4
ATR0712G091 Amborella trichopoda HOM05D003856 ORTHO05D004547 7.4e-86 321.6 198 85.4
MSTRG.7166 Avicennia marina HOM05D003856 ORTHO05D004547 7.4e-86 321.6 198 86.4
BcaC09g51102 Brassica carinata HOM05D003856 ORTHO05D004547 7.4e-86 321.6 199 86.4
Carub.0006s3186 Capsella rubella HOM05D003856 ORTHO05D004547 9.7e-86 321.2 198 84.3
CDE04G3203 Ceratophyllum demersum HOM05D003856 ORTHO05D004547 9.7e-86 321.2 198 85.4
Sp6g04920 Schrenkiella parvula HOM05D003856 ORTHO05D004547 1.6e-85 320.5 198 84.8
Thhalv10028913m.g Eutrema salsugineum HOM05D003856 ORTHO05D004547 2.2e-85 320.1 198 84.8
TPR.G32278 Trifolium pratense HOM05D003856 ORTHO05D004547 2.2e-85 320.1 198 85.4
CARHR229320 Cardamine hirsuta HOM05D003856 ORTHO05D004547 2.8e-85 319.7 199 85.4
PSO541G3298 Papaver somniferum HOM05D003856 ORTHO05D004547 2.8e-85 319.7 233 74.7
Sed0026067 Sechium edule HOM05D003856 ORTHO05D004547 3.7e-85 319.3 198 83.8
unitig_61.g26092 Utricularia gibba HOM05D003856 ORTHO05D004547 4.8e-85 318.9 212 81.1
PSO675G7111 Papaver somniferum HOM05D003856 ORTHO05D004547 8.2e-85 318.2 233 74.2
TWI63G1684 Tripterygium wilfordii HOM05D003856 ORTHO05D004547 1.1e-84 317.8 242 72.7
CARHR253580 Cardamine hirsuta HOM05D003856 ORTHO05D004547 1.8e-84 317.0 198 84.8
Zm00001eb102120 Zea mays HOM05D003856 ORTHO05D004547 5.3e-84 315.5 200 82.5
Oeu009395.1 Olea europaea HOM05D003856 ORTHO05D004547 7.7e-83 311.6 256 68.4
vmacro15762 Vaccinium macrocarpon HOM05D003856 ORTHO05D004547 7.7e-83 311.6 198 84.3
DCAR_027821 Daucus carota HOM05D003856 ORTHO05D004547 1.9e-81 307.0 237 73.4
Os09g0497400 Oryza sativa ssp. japonica HOM05D003856 ORTHO05D004547 1.9e-81 307.0 200 79.0
AagrBONN_evm.TU.Sc2ySwM_362.305 Anthoceros agrestis HOM05D003856 ORTHO05D004547 9.4e-81 304.7 198 79.8
Mapoly0029s0061 Marchantia polymorpha HOM05D003856 ORTHO05D004547 1.6e-80 303.9 198 79.3
SMO239G0047 Selaginella moellendorffii HOM05D003856 ORTHO05D004547 7.9e-80 301.6 198 79.3
Peaxi162Scf00990g00017 Petunia axillaris HOM05D003856 ORTHO05D004547 6.7e-79 298.5 198 80.8
Pp3c11_24600 Physcomitrium patens HOM05D003856 ORTHO05D004547 4.4e-78 295.8 198 77.3
Pp3c7_950 Physcomitrium patens HOM05D003856 ORTHO05D004547 2.8e-77 293.1 198 75.8
MELO3C021687.2 Cucumis melo HOM05D003856 ORTHO05D004547 4.5e-75 285.8 183 82.0
AUR62021855 Chenopodium quinoa HOM05D003856 ORTHO05D004547 1.4e-73 280.8 178 84.8
AUR62012797 Chenopodium quinoa HOM05D003856 ORTHO05D004547 3.2e-73 279.6 178 84.8
Gorai.013G129800 Gossypium raimondii HOM05D003856 ORTHO05D004547 1.4e-71 274.2 214 72.0
Haze_06937 Corylus avellana HOM05D003856 ORTHO05D004547 4.4e-70 269.2 217 71.0
GSVIVG01003331001 Vitis vinifera HOM05D003856 ORTHO05D004547 1.3e-69 267.7 159 85.5
GSVIVG01003337001 Vitis vinifera HOM05D003856 ORTHO05D004547 1.3e-69 267.7 159 85.5
SHI24455 Sapria himalayana HOM05D003856 ORTHO05D004547 5.7e-62 242.3 198 69.2
Nitab4.5_0003626g0020 Nicotiana tabacum HOM05D003856 ORTHO05D004547 4.4e-54 216.1 198 64.1
SEGI_40422 Sequoiadendron giganteum HOM05D003856 ORTHO05D004547 2.4e-52 210.3 144 75.7
Lalb_Chr21g0311231 Lupinus albus HOM05D003856 ORTHO05D004547 1.2e-48 198.0 118 86.4
HPP92_000415 Vanilla planifolia HOM05D003856 ORTHO05D004547 2.0e-46 190.7 187 59.4
CSS0048239 Camellia sinensis var. sinensis HOM05D003856 ORTHO05D004547 2.2e-45 187.2 115 85.2
MCO07G661 Micromonas commoda HOM05D003856 ORTHO05D004547 1.6e-43 181.0 192 49.5
MD10G1332200 Malus domestica HOM05D003856 ORTHO05D004547 9.5e-41 171.8 105 83.8
Haze_26609 Corylus avellana HOM05D003856 ORTHO05D004547 2.6e-38 163.7 195 45.1
Cre09.g400400 Chlamydomonas reinhardtii HOM05D003856 ORTHO05D004547 4.1e-36 156.4 207 43.5
Gorai.012G047500 Gossypium raimondii HOM05D003856 ORTHO05D004547 2.5e-33 147.1 214 47.2
Carub.0007s1888 Capsella rubella HOM05D003856 ORTHO05D004547 5.6e-33 146.0 198 50.0
Lalb_Chr21g0311241 Lupinus albus HOM05D003856 ORTHO05D004547 1.2e-27 128.3 83 79.5
CSS0021523 Camellia sinensis var. sinensis HOM05D003856 ORTHO05D004547 2.3e-26 124.0 83 81.9
CARHR290760 Cardamine hirsuta HOM05D003856 ORTHO05D004547 5.6e-25 119.4 90 72.2
AL649U10020 Arabidopsis lyrata HOM05D003856 ORTHO05D004547 9.5e-25 118.6 83 77.1
Carub.0008s0836 Capsella rubella HOM05D003856 ORTHO05D004547 6.4e-21 105.9 123 55.3
COL.COLO4_31890 Corchorus olitorius HOM05D003856 ORTHO05D004547 2.8e-16 90.5 58 81.0
Oeu040759.1 Olea europaea HOM05D003856 ORTHO05D004547 1.1e-15 88.6 52 84.6
Migut.L00276 Erythranthe guttata HOM05D003856 ORTHO05D004547 5.2e-15 86.3 51 80.4
PRCOL_00006309 Prasinoderma coloniale HOM05D003856 ORTHO05D004547 1.2e-14 85.1 197 34.0
vmacro04321 Vaccinium macrocarpon HOM05D004428 ORTHO05D013648 3.8e-13 80.1 85 57.6
Dinv13969 Davidia involucrata HOM05D003856 ORTHO05D004547 8.4e-13 79.0 68 66.2
HPP92_000455 Vanilla planifolia HOM05D003856 ORTHO05D004547 1.1e-12 78.6 52 78.8
SEGI_31097 Sequoiadendron giganteum HOM05D003856 ORTHO05D004547 4.1e-12 76.6 41 92.7
Rhsim07G0218800 Rhododendron simsii HOM05D003856 ORTHO05D013648 3.9e-10 70.1 95 48.4
vmacro16921 Vaccinium macrocarpon HOM05D000007 ORTHO05D013648 5.1e-10 69.7 95 49.5
CBR_g38137 Chara braunii HOM05D003856 ORTHO05D004547 1.5e-09 68.2 43 74.4
COL.COLO4_31891 Corchorus olitorius HOM05D003856 ORTHO05D004547 1.6e-08 64.7 59 67.8
Ah.14g078790 Amaranthus hybridus HOM05D006286 ORTHO05D007741 6.2e-08 62.8 38 78.9
Rhsim07G0218900 Rhododendron simsii HOM05D003856 ORTHO05D013648 3.1e-07 60.5 90 46.7
FAN07G2353 Fragaria x ananassa HOM05D003856 ORTHO05D004547 5.2e-07 59.7 45 75.6


User provided reference genes

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