Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1C1207T6 Lonicera japonica HOM05D006332 ORTHO05D008421 4.1e-273 944.1 475 100.0
Dinv07538 Davidia involucrata HOM05D006332 ORTHO05D008421 7.9e-208 727.2 435 82.5
Actinidia01892 Actinidia chinensis HOM05D006332 ORTHO05D008421 2.5e-206 722.2 435 80.7
GSVIVG01002030001 Vitis vinifera HOM05D006332 ORTHO05D008421 1.3e-205 719.9 433 81.3
Hma1.2p1_0881F.1_g231970 Hydrangea macrophylla HOM05D006332 ORTHO05D008421 2.7e-200 702.2 433 80.8
Cc02_g13080 Coffea canephora HOM05D006332 ORTHO05D008421 6.0e-200 701.0 433 79.9
TAR629G2846 Trochodendron aralioides HOM05D006332 ORTHO05D008421 1.8e-199 699.5 433 79.0
CiPaw.09G057500 Carya illinoinensis HOM05D006332 ORTHO05D008421 1.9e-198 696.0 434 78.8
Cpa.g.sc27.66 Carica papaya HOM05D006332 ORTHO05D008421 3.4e-195 685.3 434 77.2
Prupe.4G044000 Prunus persica HOM05D006332 ORTHO05D008421 1.7e-194 682.9 429 77.6
QL05p039635 Quercus lobata HOM05D006332 ORTHO05D008421 1.4e-193 679.9 434 77.2
Haze_06500 Corylus avellana HOM05D006332 ORTHO05D008421 4.2e-193 678.3 449 74.6
Solyc10g008990.4 Solanum lycopersicum HOM05D006332 ORTHO05D008421 5.5e-193 677.9 439 76.5
PGSC0003DMG400022831 Solanum tuberosum HOM05D006332 ORTHO05D008421 1.0e-191 673.7 442 75.3
Thecc.06G190700 Theobroma cacao HOM05D006332 ORTHO05D008421 1.3e-191 673.3 427 76.8
MD10G1296600 Malus domestica HOM05D006332 ORTHO05D008421 2.3e-191 672.5 435 76.3
Oeu053924.1 Olea europaea HOM05D006332 ORTHO05D008421 3.0e-191 672.2 441 75.3
CSS0022240 Camellia sinensis var. sinensis HOM05D006332 ORTHO05D008421 5.1e-191 671.4 433 77.4
Gohir.D06G130900 Gossypium hirsutum HOM05D006332 ORTHO05D008421 1.5e-190 669.8 427 76.3
Duzib235G1125 Durio zibethinus HOM05D006332 ORTHO05D008421 1.9e-190 669.5 427 76.8
Potri.004G040500 Populus trichocarpa HOM05D006332 ORTHO05D008421 1.9e-190 669.5 434 76.0
MELO3C002589.2 Cucumis melo HOM05D006332 ORTHO05D008421 3.3e-190 668.7 435 74.0
RcHm_v2.0_Chr5g0008031 Rosa chinensis HOM05D006332 ORTHO05D008421 4.3e-190 668.3 428 75.9
Aqoxy1G02544 Aquilegia oxysepala HOM05D006332 ORTHO05D008421 9.7e-190 667.2 441 74.1
Duzib160G0593 Durio zibethinus HOM05D006332 ORTHO05D008421 6.3e-189 664.5 427 76.8
FvH4_3g04870 Fragaria vesca HOM05D006332 ORTHO05D008421 8.2e-189 664.1 432 75.5
FAN21G2488 Fragaria x ananassa HOM05D003523 ORTHO05D004493 8.2e-189 664.1 429 76.5
ClCG03G005920 Citrullus lanatus HOM05D006332 ORTHO05D008421 1.1e-188 663.7 459 71.0
PGR004G2698 Punica granatum HOM05D006332 ORTHO05D008421 1.1e-188 663.7 435 75.2
MSTRG.13186 Avicennia marina HOM05D006332 ORTHO05D008421 1.8e-188 662.9 429 76.9
FAN16G1437 Fragaria x ananassa HOM05D006332 ORTHO05D008421 1.8e-188 662.9 429 76.5
Migut.H01511 Erythranthe guttata HOM05D006332 ORTHO05D008421 1.2e-187 660.2 429 76.5
Sed0003237 Sechium edule HOM05D006332 ORTHO05D008421 1.5e-187 659.8 434 71.9
Gohir.A06G126100 Gossypium hirsutum HOM05D006332 ORTHO05D008421 2.0e-187 659.4 429 75.3
CsaV3_1G012160 Cucumis sativus L. HOM05D006332 ORTHO05D008421 3.4e-187 658.7 435 73.1
Glyma.13G181100 Glycine max HOM05D006332 ORTHO05D008421 3.4e-187 658.7 426 75.8
CANSAT35G2021 Cannabis sativa HOM05D006332 ORTHO05D008421 4.5e-187 658.3 427 76.3
HanXRQChr04g0124141 Helianthus annuus HOM05D006332 ORTHO05D008421 4.5e-187 658.3 433 75.1
Manes.16G025600 Manihot esculenta HOM05D006332 ORTHO05D008421 5.9e-187 657.9 436 75.2
FAN11G2101 Fragaria x ananassa HOM05D003523 ORTHO05D004493 1.0e-186 657.1 432 74.8
Ca_18532_v3 Cicer arietinum L. HOM05D006332 ORTHO05D008421 2.2e-186 656.0 426 75.8
Phvul.002G227700 Phaseolus vulgaris HOM05D006332 ORTHO05D008421 2.2e-186 656.0 426 76.1
arahy.Tifrunner.gnm1.ann1.5TP18E Arachis hypogaea HOM05D006332 ORTHO05D008421 5.0e-186 654.8 426 75.1
Gorai.010G152800 Gossypium raimondii HOM05D006332 ORTHO05D008421 5.0e-186 654.8 420 76.9
arahy.Tifrunner.gnm1.ann1.I941VF Arachis hypogaea HOM05D006332 ORTHO05D008421 6.5e-186 654.4 425 75.3
MD05G1316100 Malus domestica HOM05D006332 ORTHO05D008421 8.5e-186 654.1 435 73.6
TWI38G1702 Tripterygium wilfordii HOM05D006332 ORTHO05D008421 1.4e-185 653.3 438 73.5
COL.COLO4_31500 Corchorus olitorius HOM05D006332 ORTHO05D008421 5.5e-185 651.4 449 72.8
Lj4g0020818 Lotus japonicus HOM05D006332 ORTHO05D008421 2.1e-184 649.4 426 74.6
VMungo0251G1219 Vigna mungo HOM05D006332 ORTHO05D008421 2.1e-184 649.4 429 75.5
PSO063G3883 Papaver somniferum HOM05D006332 ORTHO05D008421 3.3e-182 642.1 429 72.5
Gohir.A10G024200 Gossypium hirsutum HOM05D006332 ORTHO05D008421 5.7e-182 641.3 427 73.1
Gorai.011G026200 Gossypium raimondii HOM05D006332 ORTHO05D008421 8.2e-181 637.5 435 72.2
TPR.G12057 Trifolium pratense HOM05D006332 ORTHO05D008421 1.8e-180 636.3 425 74.1
Medtr4g088960 Medicago truncatula HOM05D006332 ORTHO05D008421 2.4e-180 636.0 426 73.5
Psat7g112800 Pisum sativum HOM05D006332 ORTHO05D008421 2.4e-180 636.0 426 73.5
Glyma.07G195200 Glycine max HOM05D006332 ORTHO05D008421 3.1e-180 635.6 426 74.6
Gohir.D10G024900 Gossypium hirsutum HOM05D006332 ORTHO05D008421 3.1e-180 635.6 426 73.0
Nitab4.5_0003942g0020 Nicotiana tabacum HOM05D006332 ORTHO05D008421 9.1e-180 634.0 443 72.7
Eucgr.D00641 Eucalyptus grandis HOM05D006332 ORTHO05D008421 2.0e-179 632.9 435 72.6
PSO782G1256 Papaver somniferum HOM05D006332 ORTHO05D008421 2.6e-179 632.5 429 71.6
ECA236G3091 Erigeron canadensis HOM05D006332 ORTHO05D008421 4.5e-179 631.7 434 73.0
Lalb_Chr16g0383661 Lupinus albus HOM05D006332 ORTHO05D008421 5.9e-179 631.3 426 73.7
Peaxi162Scf00530g00823 Petunia axillaris HOM05D006332 ORTHO05D008421 1.7e-178 629.8 438 72.1
THA.LOC104817534 Tarenaya hassleriana HOM05D006332 ORTHO05D008421 1.1e-177 627.1 437 71.9
HanXRQChr01g0003951 Helianthus annuus HOM05D006332 ORTHO05D008421 2.5e-177 625.9 426 73.7
TWI63G1670 Tripterygium wilfordii HOM05D006332 ORTHO05D008421 5.5e-177 624.8 454 68.9
Ciclev10015324m.g Citrus clementina HOM05D006332 ORTHO05D008421 9.4e-177 624.0 441 71.0
Nn6g34413 Nelumbo nucifera HOM05D006332 ORTHO05D008421 7.9e-176 620.9 437 68.9
EL10Ac8g20347 Beta vulgaris HOM05D006332 ORTHO05D008421 3.3e-174 615.5 430 71.4
ATR0680G340 Amborella trichopoda HOM05D006332 ORTHO05D008421 4.4e-174 615.1 434 72.4
Hma1.2p1_0126F.1_g059220 Hydrangea macrophylla HOM05D006332 ORTHO05D008421 2.2e-173 612.8 458 70.1
AUR62016979 Chenopodium quinoa HOM05D006332 ORTHO05D008421 1.6e-171 606.7 437 71.2
AL4G47550 Arabidopsis lyrata HOM05D006332 ORTHO05D008421 3.5e-171 605.5 435 69.4
AT2G47960 Arabidopsis thaliana HOM05D006332 ORTHO05D008421 4.5e-171 605.1 429 70.2
ECA248G3961 Erigeron canadensis HOM05D006332 ORTHO05D008421 4.5e-171 605.1 429 70.9
Sabra04G0025000 Salix brachista HOM05D006332 ORTHO05D008421 1.0e-170 604.0 502 64.3
Thhalv10018568m.g Eutrema salsugineum HOM05D006332 ORTHO05D008421 6.5e-170 601.3 437 68.4
Carub.0004s3069 Capsella rubella HOM05D006332 ORTHO05D008421 1.1e-169 600.5 431 69.6
A05p00090 Brassica napus HOM05D004682 ORTHO05D006197 1.5e-169 600.1 430 69.3
BraA05t19005Z Brassica rapa HOM05D004682 ORTHO05D006197 1.5e-169 600.1 430 69.3
Sp4g29880 Schrenkiella parvula HOM05D006332 ORTHO05D008421 2.5e-169 599.4 436 67.9
BcaC02g12534 Brassica carinata HOM05D006332 ORTHO05D008421 5.5e-169 598.2 428 69.6
C04p00010 Brassica napus HOM05D004682 ORTHO05D006197 1.2e-168 597.0 427 69.8
BolC4t21648H Brassica oleracea HOM05D004682 ORTHO05D006197 1.2e-168 597.0 427 69.8
CDE08G0172 Ceratophyllum demersum HOM05D006332 ORTHO05D008421 4.7e-168 595.1 435 67.8
HPP92_001753 Vanilla planifolia HOM05D006332 ORTHO05D008421 1.4e-164 583.6 434 67.7
Lsat_1_v5_gn_7_19001 Lactuca sativa HOM05D006332 ORTHO05D008421 3.1e-164 582.4 432 69.4
BcaB02g08727 Brassica carinata HOM05D006332 ORTHO05D008421 4.1e-164 582.0 435 67.6
AUR62014792 Chenopodium quinoa HOM05D006332 ORTHO05D008421 4.5e-163 578.6 438 68.5
SGA_v2.0_scaffold49G18281 Striga asiatica HOM05D006332 ORTHO05D008421 9.4e-161 570.9 447 65.8
Nn1g04020 Nelumbo nucifera HOM05D006332 ORTHO05D008421 4.7e-160 568.5 368 75.3
Hma1.2p1_0881F.1_g231960 Hydrangea macrophylla HOM05D006332 ORTHO05D008421 1.0e-159 567.4 345 82.9
Zm00001eb044550 Zea mays HOM05D006332 ORTHO05D008421 8.3e-157 557.8 432 65.3
Aa31LG1G29380 Aethionema arabicum HOM05D006332 ORTHO05D008421 5.9e-155 551.6 437 65.4
MBI17_g03748_MAGBIO Magnolia biondii HOM05D006332 ORTHO05D008421 5.9e-155 551.6 434 65.2
Cfa000416 Carpinus fangiana HOM05D006332 ORTHO05D008421 1.3e-154 550.4 338 78.4
CARHR143350 Cardamine hirsuta HOM05D006332 ORTHO05D008421 1.8e-151 540.0 385 70.4
DCAR_004087 Daucus carota HOM05D006332 ORTHO05D008421 4.9e-149 531.9 343 77.6
Lsat_1_v5_gn_1_127821 Lactuca sativa HOM05D006332 ORTHO05D008421 8.3e-149 531.2 439 63.6
Hund21245 Selenicereus undatus HOM05D006332 ORTHO05D008421 1.4e-143 513.8 428 62.9
unitig_8.g3355 Utricularia gibba HOM05D006332 ORTHO05D008421 2.9e-141 506.1 446 61.4
Nitab4.5_0009738g0010 Nicotiana tabacum HOM05D006332 ORTHO05D008421 2.0e-139 500.0 356 72.2
Duzib192G0908 Durio zibethinus HOM05D006332 ORTHO05D008421 3.9e-138 495.7 355 71.3
CAN.G413.15 Capsicum annuum HOM05D006332 ORTHO05D008421 8.9e-135 484.6 331 73.4
Sc24g0000810 Simmondsia chinensis HOM05D006332 ORTHO05D008421 2.4e-132 476.5 604 47.5
Mapoly0122s0006 Marchantia polymorpha HOM05D006332 ORTHO05D008421 6.4e-125 451.8 436 51.1
AagrBONN_evm.TU.Sc2ySwM_344.1820 Anthoceros agrestis HOM05D006332 ORTHO05D008421 1.3e-122 444.1 427 52.2
Pp3c1_28670 Physcomitrium patens HOM05D006332 ORTHO05D008421 1.9e-121 440.3 428 50.7
SMO364G0571 Selaginella moellendorffii HOM05D006332 ORTHO05D008421 3.3e-121 439.5 427 51.5
Atru.chr10.1934 Acer truncatum HOM05D006332 ORTHO05D008421 1.1e-119 434.5 295 74.2
SMO364G0067 Selaginella moellendorffii HOM05D006332 ORTHO05D008421 6.4e-93 345.5 308 53.9
CBR_g24248 Chara braunii HOM05D006332 ORTHO05D008421 9.3e-92 341.7 446 42.8
Gohir.A10G024325 Gossypium hirsutum HOM05D006332 ORTHO05D008421 7.6e-86 322.0 200 79.0
Nitab4.5_0009738g0020 Nicotiana tabacum HOM05D006332 ORTHO05D008421 3.2e-84 316.6 333 52.3
SHI01800 Sapria himalayana HOM05D006332 ORTHO05D008421 7.1e-84 315.5 276 63.4
Sopen10g004770 Solanum pennellii HOM05D006332 ORTHO05D008421 3.9e-82 309.7 209 71.8
Gohir.A10G024350 Gossypium hirsutum HOM05D006332 ORTHO05D008421 4.5e-54 216.5 165 64.2
PRCOL_00003805 Prasinoderma coloniale HOM05D006332 ORTHO05D008421 2.6e-41 174.1 419 31.5
SHI01798 Sapria himalayana HOM05D000002 ORTHO05D000001 3.4e-41 173.7 207 50.2
Atru.chr10.1933 Acer truncatum HOM05D006332 ORTHO05D008421 7.7e-38 162.5 113 70.8
Ciclev10009862m.g Citrus clementina HOM05D006332 ORTHO05D008421 7.2e-36 156.0 102 71.6
Nitab4.5_0009738g0030 Nicotiana tabacum HOM05D006332 ORTHO05D008421 5.0e-21 106.7 91 58.2
PSO017G7020 Papaver somniferum HOM05D006332 ORTHO05D000676 1.1e-20 105.5 107 45.8
PSO170G5489 Papaver somniferum HOM05D006332 ORTHO05D008421 3.6e-19 100.5 93 48.4
TPR.G24681 Trifolium pratense HOM05D006332 ORTHO05D001923 2.3e-18 97.8 62 74.2
Os10g0498800 Oryza sativa ssp. japonica HOM05D006332 ORTHO05D008421 8.1e-11 72.8 58 55.2
CDE02G4141 Ceratophyllum demersum HOM05D006332 ORTHO05D008421 1.8e-10 71.6 47 68.1
Cpa.g.sc777.3 Carica papaya HOM05D006332 ORTHO05D034078 8.3e-08 62.8 34 82.4
FAN09G2993 Fragaria x ananassa HOM05D006332 ORTHO05D210550 2.4e-07 61.2 66 51.5
TPR.G32042 Trifolium pratense HOM05D006332 ORTHO05D034078 4.6e-06 57.0 34 73.5
FAN09G0423 Fragaria x ananassa HOM05D000007 ORTHO05D000017 6.0e-06 56.6 63 44.4


User provided reference genes

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