Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1C1164T5 Lonicera japonica HOM05D004072 ORTHO05D005933 0.0e+00 1894.8 936 100.0
Dinv32181 Davidia involucrata HOM05D004072 ORTHO05D005933 0.0e+00 1662.9 936 85.8
CSS0029738 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 0.0e+00 1633.2 936 83.7
Actinidia07470 Actinidia chinensis HOM05D004072 ORTHO05D005933 0.0e+00 1620.5 936 82.8
GSVIVG01021613001 Vitis vinifera HOM05D004072 ORTHO05D005933 0.0e+00 1604.3 936 81.9
TAR627G0650 Trochodendron aralioides HOM05D004072 ORTHO05D005933 0.0e+00 1574.3 935 80.6
Manes.06G055700 Manihot esculenta HOM05D004072 ORTHO05D005933 0.0e+00 1572.4 933 80.8
Cc09_g08230 Coffea canephora HOM05D004072 ORTHO05D005933 0.0e+00 1572.0 936 80.3
Atru.chr10.895 Acer truncatum HOM05D004072 ORTHO05D005933 0.0e+00 1567.7 936 80.2
MD05G1274500 Malus domestica HOM05D004072 ORTHO05D005933 0.0e+00 1567.0 936 79.7
RcHm_v2.0_Chr5g0015701 Rosa chinensis HOM05D004072 ORTHO05D005933 0.0e+00 1565.8 934 80.1
CiPaw.10G086200 Carya illinoinensis HOM05D004072 ORTHO05D005933 0.0e+00 1563.1 936 80.2
Ciclev10014084m.g Citrus clementina HOM05D004072 ORTHO05D005933 0.0e+00 1558.5 936 80.0
TWI73G0101 Tripterygium wilfordii HOM05D004072 ORTHO05D005933 0.0e+00 1557.0 936 79.5
Thecc.02G012200 Theobroma cacao HOM05D004072 ORTHO05D005933 0.0e+00 1554.3 936 80.4
Duzib132G0425 Durio zibethinus HOM05D004072 ORTHO05D005933 0.0e+00 1551.6 936 80.0
FvH4_3g09950 Fragaria vesca HOM05D004072 ORTHO05D005933 0.0e+00 1550.8 934 78.8
Nn3g20249 Nelumbo nucifera HOM05D004072 ORTHO05D005933 0.0e+00 1550.8 935 78.8
Manes.14G122228 Manihot esculenta HOM05D004072 ORTHO05D005933 0.0e+00 1545.4 936 79.2
SalBow8G4752 Salvia bowleyana HOM05D004072 ORTHO05D005933 0.0e+00 1545.4 940 79.3
MD10G1254200 Malus domestica HOM05D004072 ORTHO05D005933 0.0e+00 1542.7 938 78.9
CiPaw.09G116100 Carya illinoinensis HOM05D004072 ORTHO05D005933 0.0e+00 1541.9 932 80.3
CANSAT35G1345 Cannabis sativa HOM05D004072 ORTHO05D005933 0.0e+00 1531.5 936 78.6
Lsat_1_v5_gn_7_29400 Lactuca sativa HOM05D004072 ORTHO05D005933 0.0e+00 1530.4 937 79.3
HanXRQChr04g0119071 Helianthus annuus HOM05D004072 ORTHO05D005933 0.0e+00 1528.8 935 78.4
SGA_v2.0_scaffold223G42858 Striga asiatica HOM05D004072 ORTHO05D005933 0.0e+00 1528.8 926 79.3
FAN11G0415 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 1526.1 934 77.9
ECA236G2867 Erigeron canadensis HOM05D004072 ORTHO05D005933 0.0e+00 1521.5 926 78.8
Sopen02g019350 Solanum pennellii HOM05D004072 ORTHO05D005933 0.0e+00 1519.6 936 75.4
Solyc02g070260.4 Solanum lycopersicum HOM05D004072 ORTHO05D005933 0.0e+00 1519.2 936 75.4
Potri.001G357700 Populus trichocarpa HOM05D004072 ORTHO05D005933 0.0e+00 1518.4 936 78.4
Gorai.002G162800 Gossypium raimondii HOM05D004072 ORTHO05D005933 0.0e+00 1515.7 937 78.7
MSTRG.16285 Avicennia marina HOM05D004072 ORTHO05D005933 0.0e+00 1515.4 936 78.4
Gohir.A01G139400 Gossypium hirsutum HOM05D004072 ORTHO05D005933 0.0e+00 1515.0 937 78.4
FAN16G0609 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 1513.8 934 77.3
FAN25G0515 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 1511.9 934 77.2
Gohir.D01G131100 Gossypium hirsutum HOM05D004072 ORTHO05D005933 0.0e+00 1506.9 937 78.4
FAN21G2972 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 1504.2 934 77.1
PGR031G0553 Punica granatum HOM05D004072 ORTHO05D005933 0.0e+00 1495.7 936 75.6
Duzib052G1035 Durio zibethinus HOM05D004072 ORTHO05D005933 0.0e+00 1493.0 936 77.9
Sabra16G0235400 Salix brachista HOM05D004072 ORTHO05D005933 0.0e+00 1491.1 955 76.0
Ca_02513_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 0.0e+00 1483.8 936 75.1
Migut.M01885 Erythranthe guttata HOM05D004072 ORTHO05D005933 0.0e+00 1482.2 936 76.3
Nitab4.5_0008398g0020 Nicotiana tabacum HOM05D004072 ORTHO05D005933 0.0e+00 1480.7 936 75.5
Lj6g0006190 Lotus japonicus HOM05D004072 ORTHO05D005933 0.0e+00 1474.1 936 74.0
Psat1g019120 Pisum sativum HOM05D004072 ORTHO05D005933 0.0e+00 1473.0 936 74.1
CAN.G660.42 Capsicum annuum HOM05D004072 ORTHO05D005933 0.0e+00 1472.2 921 74.5
MELO3C007083.2 Cucumis melo HOM05D004072 ORTHO05D005933 0.0e+00 1471.8 936 75.1
Eucgr.E02482 Eucalyptus grandis HOM05D004072 ORTHO05D005933 0.0e+00 1466.4 936 74.5
Glyma.15G192700 Glycine max HOM05D004072 ORTHO05D005933 0.0e+00 1466.1 936 74.6
Medtr2g048210 Medicago truncatula HOM05D004072 ORTHO05D005933 0.0e+00 1465.7 936 73.9
Glyma.09G084300 Glycine max HOM05D004072 ORTHO05D005933 0.0e+00 1463.7 936 74.5
Sed0022754 Sechium edule HOM05D004072 ORTHO05D005933 0.0e+00 1463.0 934 74.5
VMungo1309G2749 Vigna mungo HOM05D004072 ORTHO05D005933 0.0e+00 1461.8 936 73.8
Phvul.009G217700 Phaseolus vulgaris HOM05D004072 ORTHO05D005933 0.0e+00 1460.3 936 73.9
CsaV3_6G052280 Cucumis sativus L. HOM05D004072 ORTHO05D005933 0.0e+00 1458.0 936 74.3
Lalb_Chr08g0233191 Lupinus albus HOM05D004072 ORTHO05D005933 0.0e+00 1458.0 936 73.7
vmacro03398 Vaccinium macrocarpon HOM05D004072 ORTHO05D005933 0.0e+00 1457.6 1357 57.0
Aqoxy1G01646_Aqoxy1G01645 Aquilegia oxysepala HOM05D004072 ORTHO05D005933 0.0e+00 1444.5 937 73.3
PSO541G2055 Papaver somniferum HOM05D004072 ORTHO05D005933 0.0e+00 1434.9 935 73.4
Thhalv10016130m.g Eutrema salsugineum HOM05D004072 ORTHO05D005933 0.0e+00 1431.0 937 73.5
Nitab4.5_0001181g0040 Nicotiana tabacum HOM05D004072 ORTHO05D005933 0.0e+00 1430.2 942 73.1
PSO675G3632 Papaver somniferum HOM05D004072 ORTHO05D005933 0.0e+00 1430.2 933 73.2
THA.LOC104798608 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 0.0e+00 1427.5 940 72.9
Ah.14g086190 Amaranthus hybridus HOM05D004072 ORTHO05D005933 0.0e+00 1425.6 935 72.5
Carub.0004s1637 Capsella rubella HOM05D004072 ORTHO05D005933 0.0e+00 1425.6 937 72.6
AT2G34680 Arabidopsis thaliana HOM05D004072 ORTHO05D005933 0.0e+00 1425.2 937 72.8
Prupe.4G089200 Prunus persica HOM05D004072 ORTHO05D005933 0.0e+00 1417.1 996 70.1
Hund21569 Selenicereus undatus HOM05D004072 ORTHO05D005933 0.0e+00 1412.1 935 72.0
A03p19230 Brassica napus HOM05D004072 ORTHO05D005933 0.0e+00 1409.0 937 71.9
arahy.Tifrunner.gnm1.ann1.39P5NE Arachis hypogaea HOM05D004072 ORTHO05D005933 0.0e+00 1408.7 1031 67.3
AL4G30670 Arabidopsis lyrata HOM05D004072 ORTHO05D005933 0.0e+00 1406.0 937 72.1
BraA03t11178Z Brassica rapa HOM05D004072 ORTHO05D005933 0.0e+00 1404.4 937 71.7
CARHR128800 Cardamine hirsuta HOM05D004072 ORTHO05D005933 0.0e+00 1404.0 937 71.6
arahy.Tifrunner.gnm1.ann1.WCP5HM Arachis hypogaea HOM05D004072 ORTHO05D005933 0.0e+00 1403.3 913 73.3
AUR62042015 Chenopodium quinoa HOM05D004072 ORTHO05D005933 0.0e+00 1400.6 935 70.6
Aa31LG10G6650 Aethionema arabicum HOM05D004072 ORTHO05D005933 0.0e+00 1400.2 937 71.2
BolC3t14626H Brassica oleracea HOM05D004072 ORTHO05D005933 0.0e+00 1394.0 937 71.4
AUR62038603 Chenopodium quinoa HOM05D004072 ORTHO05D005933 0.0e+00 1391.7 954 69.2
C03p22430 Brassica napus HOM05D004072 ORTHO05D005933 0.0e+00 1387.1 939 71.2
ATR0165G006 Amborella trichopoda HOM05D004072 ORTHO05D005933 0.0e+00 1385.5 926 71.5
Sp4g16960 Schrenkiella parvula HOM05D004072 ORTHO05D005933 0.0e+00 1385.5 937 71.3
QL05p053312 Quercus lobata HOM05D004072 ORTHO05D005933 0.0e+00 1385.2 824 80.2
ClCG01G025080 Citrullus lanatus HOM05D004072 ORTHO05D005933 0.0e+00 1381.3 1019 67.5
Sc24g0001460 Simmondsia chinensis HOM05D004072 ORTHO05D005933 0.0e+00 1338.2 879 72.6
EL10Ac8g19581 Beta vulgaris HOM05D004072 ORTHO05D005933 0.0e+00 1328.9 959 68.0
Peaxi162Scf00670g00114 Petunia axillaris HOM05D004072 ORTHO05D005933 0.0e+00 1318.1 874 71.9
HPP92_001000 Vanilla planifolia HOM05D004072 ORTHO05D005933 0.0e+00 1293.9 936 65.9
Zm00001eb299970 Zea mays HOM05D004072 ORTHO05D005933 0.0e+00 1256.1 933 64.1
SEGI_16447 Sequoiadendron giganteum HOM05D004072 ORTHO05D005933 0.0e+00 1251.9 948 63.8
TAR626G0996 Trochodendron aralioides HOM05D004072 ORTHO05D005933 0.0e+00 1202.6 910 65.3
BcaC01g05784 Brassica carinata HOM05D004072 ORTHO05D005933 0.0e+00 1201.4 948 63.8
COL.COLO4_17682 Corchorus olitorius HOM05D004072 ORTHO05D005933 0.0e+00 1199.9 936 65.7
DCAR_003864 Daucus carota HOM05D004072 ORTHO05D005933 0.0e+00 1166.8 905 65.4
Haze_05771 Corylus avellana HOM05D004072 ORTHO05D005933 0.0e+00 1129.8 938 62.9
Pp3c17_7410 Physcomitrium patens HOM05D004072 ORTHO05D005933 0.0e+00 1127.5 937 58.3
Pp3c14_11530 Physcomitrium patens HOM05D004072 ORTHO05D005933 0.0e+00 1124.4 937 58.2
Mapoly0023s0068 Marchantia polymorpha HOM05D004072 ORTHO05D005933 0.0e+00 1116.7 938 57.6
SMO271G0077 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 0.0e+00 1101.3 955 57.0
Oeu040089.1 Olea europaea HOM05D004072 ORTHO05D005933 0.0e+00 1092.4 936 62.3
SMO308G0046 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 0.0e+00 1092.4 955 56.6
Hma1.2p1_1600F.1_g293150 Hydrangea macrophylla HOM05D004072 ORTHO05D005933 4.9e-310 1067.8 616 84.1
EL10Ac9g22637 Beta vulgaris HOM05D004072 ORTHO05D005933 5.4e-301 1037.7 742 68.2
Rhsim13G0119900 Rhododendron simsii HOM05D004072 ORTHO05D005933 1.9e-285 986.1 666 71.0
CDE02G3068 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 4.1e-269 931.8 681 64.0
TPR.G28617 Trifolium pratense HOM05D004072 ORTHO05D005933 2.1e-268 929.5 601 73.2
Potri.011G090150 Populus trichocarpa HOM05D004072 ORTHO05D005933 2.0e-263 912.9 552 81.0
CAN.G660.43 Capsicum annuum HOM05D004072 ORTHO05D005933 7.2e-213 745.0 637 57.5
Cpa.g.sc17.88 Carica papaya HOM05D004072 ORTHO05D005933 6.3e-193 678.7 429 75.8
HPP92_000967 Vanilla planifolia HOM05D004072 ORTHO05D005933 1.6e-180 637.5 600 53.7
RcHm_v2.0_Chr1g0313161 Rosa chinensis HOM05D004072 ORTHO05D005933 1.2e-162 578.2 329 86.6
Os07g0148800 Oryza sativa ssp. japonica HOM05D004072 ORTHO05D005933 1.5e-162 577.8 377 74.8
Potri.011G090200 Populus trichocarpa HOM05D004072 ORTHO05D005933 1.5e-154 551.2 356 74.2
TPR.G28615 Trifolium pratense HOM05D004072 ORTHO05D005933 8.1e-148 528.9 335 74.6
THA.LOC104813323 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 1.2e-143 515.0 390 65.1
Medtr8g464200 Medicago truncatula HOM05D004072 ORTHO05D005933 1.3e-129 468.4 890 33.8
RcHm_v2.0_Chr5g0015771 Rosa chinensis HOM05D004072 ORTHO05D005933 1.8e-115 421.4 365 64.7
CBR_g58028 Chara braunii HOM05D004072 ORTHO05D005933 2.4e-107 394.4 428 44.9
Cpa.g.sc17.87 Carica papaya HOM05D004072 ORTHO05D005933 2.9e-105 387.5 247 70.4
Rhsim07G0133800 Rhododendron simsii HOM05D004072 ORTHO05D005933 1.8e-94 351.7 478 42.1
CSS0044654 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 7.2e-80 303.1 177 75.7
CBR_g51063 Chara braunii HOM05D004072 ORTHO05D005933 7.2e-80 303.1 338 44.1
CSS0027246 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 1.4e-67 262.3 170 79.4
TAR626G0585 Trochodendron aralioides HOM05D004072 ORTHO05D005933 2.4e-67 261.5 152 84.9
Ca_19908_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 5.4e-67 260.4 175 68.0
Cpa.g.sc17.85 Carica papaya HOM05D004072 ORTHO05D005933 1.5e-64 252.3 154 83.1
CBR_g34929 Chara braunii HOM05D004072 ORTHO05D005933 8.3e-52 209.9 203 46.8
PGSC0003DMG400021174 Solanum tuberosum HOM05D004072 ORTHO05D005933 1.1e-51 209.5 115 89.6
CDE02G4494 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 5.6e-48 197.2 129 75.2
Lsat_1_v5_gn_1_88400 Lactuca sativa HOM05D004072 ORTHO05D005933 1.2e-47 196.1 130 70.8
QL05p053334 Quercus lobata HOM05D004072 ORTHO05D005933 1.7e-44 185.7 99 93.9
MELO3C003358.2 Cucumis melo HOM05D004072 ORTHO05D005933 1.2e-39 169.5 169 53.3
Atru.chr2.7 Acer truncatum HOM05D004072 ORTHO05D005933 7.8e-34 150.2 205 46.8
CBR_g34931 Chara braunii HOM05D000019 ORTHO05D001702 1.9e-32 145.6 123 57.7
Actinidia04621 Actinidia chinensis HOM05D004072 ORTHO05D005933 1.3e-28 132.9 111 59.5
HanXRQChr09g0247891 Helianthus annuus HOM05D004072 ORTHO05D005933 8.4e-28 130.2 88 65.9
Cc09_g08270 Coffea canephora HOM05D004072 ORTHO05D005933 7.1e-27 127.1 73 86.3
Medtr3g010273 Medicago truncatula HOM05D004072 ORTHO05D005933 9.3e-27 126.7 93 71.0
vmacro01040 Vaccinium macrocarpon HOM05D000902 ORTHO05D000832 7.3e-24 117.1 215 38.1
Cc09_g08260 Coffea canephora HOM05D004072 ORTHO05D005933 1.4e-22 112.8 75 80.0
RcHm_v2.0_Chr1g0313151 Rosa chinensis HOM05D004072 ORTHO05D005933 1.2e-18 99.8 57 87.7
CAN.G23816.1 Capsicum annuum HOM05D004072 ORTHO05D038051 5.1e-17 94.4 79 54.4
Actinidia36004 Actinidia chinensis HOM05D004072 ORTHO05D038051 3.3e-16 91.7 58 69.0
SalBow5G3729 Salvia bowleyana HOM05D004072 ORTHO05D007163 5.6e-16 90.9 98 45.9
PGSC0003DMG400002279 Solanum tuberosum HOM05D004072 ORTHO05D005933 1.4e-14 86.3 50 88.0
PGSC0003DMG400006210 Solanum tuberosum HOM05D007022 ORTHO05D008868 1.2e-13 83.2 52 80.8
Lsat_1_v5_gn_6_30620 Lactuca sativa HOM05D000062 ORTHO05D013119 1.6e-10 72.8 165 33.3
Lsat_1_v5_gn_5_73260 Lactuca sativa HOM05D000371 ORTHO05D006177 2.1e-10 72.4 57 57.9
Lsat_1_v5_gn_6_117121 Lactuca sativa HOM05D004072 ORTHO05D001686 1.3e-09 69.7 40 80.0
SalBow5G4417 Salvia bowleyana HOM05D004072 ORTHO05D007163 1.3e-09 69.7 95 41.1
Lsat_1_v5_gn_9_121081 Lactuca sativa HOM05D004072 ORTHO05D001686 1.1e-08 66.6 35 85.7
Lsat_1_v5_gn_7_40200 Lactuca sativa HOM05D000062 ORTHO05D013119 2.5e-08 65.5 162 32.7
CBR_g34927 Chara braunii HOM05D000019 ORTHO05D000002 2.8e-07 62.0 102 30.4
CSS0006934 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 2.4e-06 58.9 175 28.0
Rhsim12G0022600 Rhododendron simsii HOM05D004072 ORTHO05D005933 2.4e-06 58.9 49 65.3
Atru.chr10.903 Acer truncatum HOM05D004072 ORTHO05D021063 6.9e-06 57.4 42 76.2


User provided reference genes

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