Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1C1147G9 Lonicera japonica HOM05D003927 ORTHO05D004905 3.0e-240 834.7 408 100.0
Rhsim13G0129600 Rhododendron simsii HOM05D003927 ORTHO05D004905 1.7e-203 712.6 476 76.3
GSVIVG01012124001 Vitis vinifera HOM05D003927 ORTHO05D004905 8.9e-200 700.3 476 74.2
Actinidia22422 Actinidia chinensis HOM05D003927 ORTHO05D004905 8.3e-198 693.7 473 74.8
Nn7g38278 Nelumbo nucifera HOM05D003927 ORTHO05D004905 2.4e-197 692.2 476 73.9
CiPaw.09G074500 Carya illinoinensis HOM05D003927 ORTHO05D004905 3.1e-197 691.8 476 73.7
Thecc.02G005900 Theobroma cacao HOM05D003927 ORTHO05D004905 9.2e-197 690.3 477 73.6
QL11p013470 Quercus lobata HOM05D003927 ORTHO05D004905 4.5e-196 688.0 473 73.8
MD10G1229400 Malus domestica HOM05D003927 ORTHO05D004905 1.0e-195 686.8 487 72.1
Hma1.2p1_0510F.1_g168820 Hydrangea macrophylla HOM05D003927 ORTHO05D004905 2.3e-195 685.6 479 73.3
Lalb_Chr07g0188401 Lupinus albus HOM05D003927 ORTHO05D004905 6.6e-195 684.1 480 72.1
RcHm_v2.0_Chr5g0020631 Rosa chinensis HOM05D003927 ORTHO05D004905 1.1e-194 683.3 477 72.7
Prupe.4G115400 Prunus persica HOM05D003927 ORTHO05D004905 3.3e-194 681.8 480 72.3
Cc00_g22880 Coffea canephora HOM05D003927 ORTHO05D004905 1.6e-193 679.5 476 71.8
Duzib248G0257 Durio zibethinus HOM05D003927 ORTHO05D004905 2.1e-193 679.1 477 73.0
FAN16G1436 Fragaria x ananassa HOM05D003927 ORTHO05D004905 2.1e-193 679.1 477 72.1
COL.COLO4_17634 Corchorus olitorius HOM05D003927 ORTHO05D004905 4.7e-193 677.9 475 72.0
MD05G1248900 Malus domestica HOM05D003927 ORTHO05D004905 6.1e-193 677.6 487 70.8
ATR0763G183 Amborella trichopoda HOM05D003927 ORTHO05D004905 3.0e-192 675.2 476 71.2
Ciclev10014997m.g Citrus clementina HOM05D003927 ORTHO05D004905 3.0e-192 675.2 477 72.3
Phvul.002G190700 Phaseolus vulgaris HOM05D003927 ORTHO05D004905 5.2e-192 674.5 476 71.6
Cpa.g.sc30.136 Carica papaya HOM05D003927 ORTHO05D004905 8.9e-192 673.7 475 72.0
Manes.03G074000 Manihot esculenta HOM05D003927 ORTHO05D004905 8.9e-192 673.7 472 72.7
Ca_18249_v3 Cicer arietinum L. HOM05D003927 ORTHO05D004905 1.2e-191 673.3 476 70.8
FAN25G3197 Fragaria x ananassa HOM05D003927 ORTHO05D004905 2.6e-191 672.2 474 71.7
VMungo0251G3294 Vigna mungo HOM05D003927 ORTHO05D004905 2.6e-191 672.2 476 71.0
CANSAT35G1049 Cannabis sativa HOM05D003927 ORTHO05D004905 9.8e-191 670.2 476 70.2
arahy.Tifrunner.gnm1.ann1.YAS9I4 Arachis hypogaea HOM05D003927 ORTHO05D004905 1.3e-190 669.8 474 71.1
Potri.001G159700 Populus trichocarpa HOM05D003927 ORTHO05D004905 2.9e-190 668.7 474 71.5
DCAR_003771 Daucus carota HOM05D003927 ORTHO05D004905 3.7e-190 668.3 476 71.6
PGSC0003DMG400010448 Solanum tuberosum HOM05D003927 ORTHO05D004905 4.9e-190 667.9 476 70.6
Duzib132G1257 Durio zibethinus HOM05D003927 ORTHO05D004905 6.4e-190 667.5 476 71.4
Solyc02g068530.4 Solanum lycopersicum HOM05D003927 ORTHO05D004905 6.4e-190 667.5 476 70.6
Sopen02g017670 Solanum pennellii HOM05D003927 ORTHO05D004905 6.4e-190 667.5 476 70.6
TWI15G0787 Tripterygium wilfordii HOM05D003927 ORTHO05D004905 6.4e-190 667.5 473 71.7
arahy.Tifrunner.gnm1.ann1.QMDN7F Arachis hypogaea HOM05D003927 ORTHO05D004905 8.3e-190 667.2 474 71.1
CAN.G149.2 Capsicum annuum HOM05D003927 ORTHO05D004905 8.3e-190 667.2 476 70.8
SGA_v2.0_scaffold175G39352 Striga asiatica HOM05D003927 ORTHO05D004905 8.3e-190 667.2 473 71.0
FvH4_3g12660 Fragaria vesca HOM05D003927 ORTHO05D004905 1.1e-189 666.8 472 71.8
Gohir.D12G047200 Gossypium hirsutum HOM05D003927 ORTHO05D004905 1.4e-189 666.4 476 71.4
Atru.chr10.419 Acer truncatum HOM05D003927 ORTHO05D004905 1.9e-189 666.0 474 71.7
Glyma.08G086700 Glycine max HOM05D003927 ORTHO05D004905 1.9e-189 666.0 476 70.8
Potri.003G074700 Populus trichocarpa HOM05D003927 ORTHO05D004905 1.9e-189 666.0 479 70.6
Cfa000676 Carpinus fangiana HOM05D003927 ORTHO05D004905 4.1e-189 664.8 474 72.2
Peaxi162Scf00199g00517 Petunia axillaris HOM05D003927 ORTHO05D004905 4.1e-189 664.8 473 70.8
Ah.08g210510 Amaranthus hybridus HOM05D003927 ORTHO05D004905 9.2e-189 663.7 461 71.8
Gohir.A12G048400 Gossypium hirsutum HOM05D003927 ORTHO05D004905 9.2e-189 663.7 476 71.0
Oeu058944.1 Olea europaea HOM05D003927 ORTHO05D004905 9.2e-189 663.7 476 70.4
PGR042G2298 Punica granatum HOM05D003927 ORTHO05D004905 1.2e-188 663.3 475 70.5
Medtr4g094668 Medicago truncatula HOM05D003927 ORTHO05D004905 1.6e-188 662.9 476 69.5
Gorai.008G049800 Gossypium raimondii HOM05D003927 ORTHO05D004905 3.5e-188 661.8 477 71.3
Lj4g0018518 Lotus japonicus HOM05D003927 ORTHO05D004905 3.5e-188 661.8 474 70.5
TPR.G2935 Trifolium pratense HOM05D003927 ORTHO05D004905 4.6e-188 661.4 476 69.3
EL10Ac7g16905 Beta vulgaris HOM05D003927 ORTHO05D004905 1.7e-187 659.4 476 69.5
AUR62006193 Chenopodium quinoa HOM05D003927 ORTHO05D004905 1.7e-187 659.4 476 69.5
Lsat_1_v5_gn_2_61101 Lactuca sativa HOM05D003927 ORTHO05D004905 2.3e-187 659.1 474 70.3
TWI38G0647 Tripterygium wilfordii HOM05D003927 ORTHO05D004905 3.0e-187 658.7 472 70.8
ECA238G4411 Erigeron canadensis HOM05D003927 ORTHO05D004905 5.0e-187 657.9 472 69.9
Sabra01G0132300 Salix brachista HOM05D003927 ORTHO05D004905 5.0e-187 657.9 472 70.6
CsaV3_6G052860 Cucumis sativus L. HOM05D003927 ORTHO05D004905 6.6e-187 657.5 472 70.6
HanXRQChr14g0440241 Helianthus annuus HOM05D003927 ORTHO05D004905 6.6e-187 657.5 472 70.8
Sabra03G0045400 Salix brachista HOM05D003927 ORTHO05D004905 6.6e-187 657.5 477 70.6
CSS0033159 Camellia sinensis var. sinensis HOM05D003927 ORTHO05D004905 8.6e-187 657.1 472 71.6
MELO3C007022.2 Cucumis melo HOM05D003927 ORTHO05D004905 8.6e-187 657.1 472 70.6
Eucgr.E04308 Eucalyptus grandis HOM05D003927 ORTHO05D004905 1.1e-186 656.8 472 70.6
MSTRG.7601 Avicennia marina HOM05D003927 ORTHO05D004905 1.5e-186 656.4 476 69.3
Psat7g088440 Pisum sativum HOM05D003927 ORTHO05D004905 1.5e-186 656.4 480 68.3
SGA_v2.0_scaffold298G47698 Striga asiatica HOM05D003927 ORTHO05D004905 2.5e-186 655.6 445 74.2
CANSAT64G2986 Cannabis sativa HOM05D003927 ORTHO05D004905 5.6e-186 654.4 478 70.3
PSO675G6709 Papaver somniferum HOM05D003927 ORTHO05D004905 3.6e-185 651.7 473 69.8
THA.LOC104814353 Tarenaya hassleriana HOM05D003927 ORTHO05D004905 4.7e-185 651.4 479 67.6
Sed0013384 Sechium edule HOM05D003927 ORTHO05D004905 8.0e-185 650.6 472 69.9
Aqoxy3G04338 Aquilegia oxysepala HOM05D003927 ORTHO05D004905 5.2e-184 647.9 476 68.9
HanXRQChr15g0483481 Helianthus annuus HOM05D003927 ORTHO05D004905 8.9e-184 647.1 472 69.7
PSO541G2426 Papaver somniferum HOM05D003927 ORTHO05D004905 8.9e-184 647.1 473 69.6
Thhalv10007394m.g Eutrema salsugineum HOM05D003927 ORTHO05D004905 3.4e-183 645.2 476 67.6
Gorai.005G268300 Gossypium raimondii HOM05D003927 ORTHO05D004905 3.7e-182 641.7 470 70.0
CARHR129180 Cardamine hirsuta HOM05D003927 ORTHO05D004905 6.4e-182 641.0 477 67.3
AL4G31040 Arabidopsis lyrata HOM05D003927 ORTHO05D004905 1.4e-181 639.8 477 67.1
Sp4g17300 Schrenkiella parvula HOM05D003927 ORTHO05D004905 3.2e-181 638.6 476 67.0
CARHR030580 Cardamine hirsuta HOM05D003927 ORTHO05D004905 4.1e-181 638.3 472 67.4
AL1G45460 Arabidopsis lyrata HOM05D003927 ORTHO05D004905 5.4e-181 637.9 476 66.8
Hund12931 Selenicereus undatus HOM05D003927 ORTHO05D004905 7.0e-181 637.5 503 65.4
AT2G35020 Arabidopsis thaliana HOM05D003927 ORTHO05D004905 9.2e-181 637.1 477 66.9
Carub.0001s2946 Capsella rubella HOM05D003927 ORTHO05D004905 2.7e-180 635.6 476 66.4
Migut.M01998 Erythranthe guttata HOM05D003927 ORTHO05D004905 2.7e-180 635.6 469 68.9
BcaB07g32771 Brassica carinata HOM05D003927 ORTHO05D004905 3.5e-180 635.2 476 66.6
Os08g0206900 Oryza sativa ssp. japonica HOM05D003927 ORTHO05D004905 3.5e-180 635.2 476 66.6
Sp1g26910 Schrenkiella parvula HOM05D003927 ORTHO05D004905 7.8e-180 634.0 477 66.9
BcaC05g27140 Brassica carinata HOM05D003927 ORTHO05D004905 1.0e-179 633.6 476 66.6
C05p30260 Brassica napus HOM05D003927 ORTHO05D004905 1.0e-179 633.6 476 66.6
BolC5t31766H Brassica oleracea HOM05D003927 ORTHO05D004905 1.0e-179 633.6 476 66.6
SalBow8G3138 Salvia bowleyana HOM05D003927 ORTHO05D004905 1.0e-179 633.6 493 66.9
A09p35130 Brassica napus HOM05D003927 ORTHO05D004905 1.3e-179 633.3 476 66.4
ClCG01G025630 Citrullus lanatus HOM05D003927 ORTHO05D004905 1.3e-179 633.3 462 69.7
BraA09t39043Z Brassica rapa HOM05D003927 ORTHO05D004905 2.3e-179 632.5 476 66.2
Thhalv10016553m.g Eutrema salsugineum HOM05D003927 ORTHO05D004905 3.0e-179 632.1 476 66.8
BcaB04g18183 Brassica carinata HOM05D003927 ORTHO05D004905 3.9e-179 631.7 476 66.4
BcaC07g37780 Brassica carinata HOM05D003927 ORTHO05D004905 3.3e-178 628.6 477 66.5
A08p10790 Brassica napus HOM05D003927 ORTHO05D004905 5.6e-178 627.9 477 66.5
BraA08t33076Z Brassica rapa HOM05D003927 ORTHO05D004905 5.6e-178 627.9 477 66.5
TAR624G0604 Trochodendron aralioides HOM05D003927 ORTHO05D004905 7.3e-178 627.5 450 72.0
BolC8t48168H Brassica oleracea HOM05D003927 ORTHO05D004905 9.5e-178 627.1 477 66.2
Carub.0004s1671 Capsella rubella HOM05D003927 ORTHO05D004905 1.2e-177 626.7 470 67.2
Haze_06142 Corylus avellana HOM05D003927 ORTHO05D004905 1.6e-177 626.3 532 63.0
Aa31LG9G16190 Aethionema arabicum HOM05D003927 ORTHO05D004905 4.7e-177 624.8 486 65.6
THA.LOC104798559 Tarenaya hassleriana HOM05D003927 ORTHO05D004905 4.7e-177 624.8 484 66.1
Dinv10533 Davidia involucrata HOM05D003927 ORTHO05D004905 2.3e-176 622.5 447 71.4
Zm00001eb430780 Zea mays HOM05D003927 ORTHO05D004905 4.0e-176 621.7 476 65.5
TAR628G0742 Trochodendron aralioides HOM05D003927 ORTHO05D004905 6.8e-176 620.9 443 72.0
CDE12G0287 Ceratophyllum demersum HOM05D003927 ORTHO05D004905 2.0e-175 619.4 471 66.9
BcaB02g09488 Brassica carinata HOM05D003927 ORTHO05D004905 2.6e-175 619.0 477 65.2
A05p10690 Brassica napus HOM05D003927 ORTHO05D004905 5.8e-175 617.8 477 65.2
BraA05t20009Z Brassica rapa HOM05D003927 ORTHO05D004905 7.5e-175 617.5 476 65.3
AUR62037029 Chenopodium quinoa HOM05D003927 ORTHO05D004905 1.3e-174 616.7 484 65.9
BcaC02g11582 Brassica carinata HOM05D003927 ORTHO05D004905 2.2e-174 615.9 477 65.0
BolC4t22968H Brassica oleracea HOM05D003927 ORTHO05D004905 2.9e-174 615.5 477 65.0
Zm00001eb070940 Zea mays HOM05D003927 ORTHO05D004905 2.9e-174 615.5 476 64.9
TAR625G0767 Trochodendron aralioides HOM05D003927 ORTHO05D004905 6.4e-174 614.4 447 70.9
C04p13780 Brassica napus HOM05D003927 ORTHO05D004905 3.2e-173 612.1 477 64.8
HPP92_016424 Vanilla planifolia HOM05D003927 ORTHO05D004905 1.2e-172 610.1 475 66.1
Glyma.05G132100 Glycine max HOM05D003927 ORTHO05D004905 3.9e-171 605.1 444 69.6
Aa31LG2G15040 Aethionema arabicum HOM05D003927 ORTHO05D004905 1.2e-169 600.1 532 59.0
FAN21G3157 Fragaria x ananassa HOM05D003927 ORTHO05D004905 2.4e-168 595.9 477 65.4
Zm00001eb413790 Zea mays HOM05D003927 ORTHO05D004905 2.9e-166 589.0 476 62.6
Gohir.D02G239900 Gossypium hirsutum HOM05D003927 ORTHO05D004905 2.7e-164 582.4 457 67.0
Lj2A344G38 Lonicera japonica HOM05D003927 ORTHO05D004905 3.9e-163 578.6 389 75.8
Gohir.A03G217900 Gossypium hirsutum HOM05D003927 ORTHO05D004905 1.1e-154 550.4 396 71.2
MBI18_g31367_MAGBIO Magnolia biondii HOM05D003927 ORTHO05D004905 2.1e-153 546.2 474 62.2
Dinv29312 Davidia involucrata HOM05D003927 ORTHO05D004905 3.8e-150 535.4 356 76.1
Sc24g0002980 Simmondsia chinensis HOM05D003927 ORTHO05D004905 1.3e-147 526.9 330 77.0
PGR004G1431 Punica granatum HOM05D003927 ORTHO05D004905 1.5e-143 513.5 385 67.5
SMO351G0243 Selaginella moellendorffii HOM05D003927 ORTHO05D004905 3.8e-142 508.8 471 57.7
CDE01G0678 Ceratophyllum demersum HOM05D000154 ORTHO05D004905 8.4e-142 507.7 325 75.4
unitig_748.g7494 Utricularia gibba HOM05D003927 ORTHO05D004905 1.9e-138 496.5 439 61.3
AT1G31070 Arabidopsis thaliana HOM05D003927 ORTHO05D004905 1.3e-137 493.8 330 72.4
Nitab4.5_0006246g0020 Nicotiana tabacum HOM05D003927 ORTHO05D004905 1.2e-132 477.2 305 76.7
Nitab4.5_0000443g0090 Nicotiana tabacum HOM05D003927 ORTHO05D004905 8.7e-131 471.1 397 63.2
HPP92_026365 Vanilla planifolia HOM05D003927 ORTHO05D004905 6.9e-128 461.5 330 70.3
SHI20747 Sapria himalayana HOM05D003927 ORTHO05D004905 1.7e-121 440.3 673 40.4
Mapoly0089s0037 Marchantia polymorpha HOM05D003927 ORTHO05D004905 2.0e-111 406.8 328 61.0
AagrBONN_evm.TU.Sc2ySwM_362.1916 Anthoceros agrestis HOM05D003927 ORTHO05D004905 4.2e-109 399.1 333 60.4
TAR626G1704 Trochodendron aralioides HOM05D003927 ORTHO05D004905 2.3e-99 366.7 208 84.6
CBR_g45707 Chara braunii HOM05D003927 ORTHO05D004905 3.0e-83 313.2 412 44.4
SGA_v2.0_scaffold638G53308 Striga asiatica HOM05D003927 ORTHO05D004905 1.5e-82 310.8 264 63.6
Cre07.g345300 Chlamydomonas reinhardtii HOM05D003927 ORTHO05D004905 2.0e-82 310.5 471 40.3
TAR626G0108 Trochodendron aralioides HOM05D003927 ORTHO05D004905 7.5e-82 308.5 238 67.6
MCO02G083 Micromonas commoda HOM05D003927 ORTHO05D004905 2.2e-73 280.4 489 36.8
PRCOL_00005739 Prasinoderma coloniale HOM05D003927 ORTHO05D004905 1.2e-66 258.1 466 36.9
Cfa023099 Carpinus fangiana HOM05D003927 ORTHO05D004905 5.8e-66 255.8 492 33.9
Atru.ctg1436.5 Acer truncatum HOM05D003927 ORTHO05D004905 2.2e-57 227.3 487 32.0
Haze_26176 Corylus avellana HOM05D003927 ORTHO05D004905 6.4e-57 225.7 350 38.3
AagrBONN_evm.TU.Sc2ySwM_228.1844 Anthoceros agrestis HOM05D007300 ORTHO05D004905 5.1e-46 189.5 366 32.8
Zm00001eb010380 Zea mays HOM05D003927 ORTHO05D004905 8.7e-46 188.7 141 65.2
Zm00001eb085490 Zea mays HOM05D003927 ORTHO05D004905 3.3e-45 186.8 141 65.2
Pp3c4_17200 Physcomitrium patens HOM05D003927 ORTHO05D004905 5.3e-43 179.5 349 33.8
Dinv29313 Davidia involucrata HOM05D003927 ORTHO05D004905 1.2e-42 178.3 87 95.4
SGA_v2.0_scaffold77G25372 Striga asiatica HOM05D003927 ORTHO05D004905 1.2e-42 178.3 87 95.4
GSVIVG01006086001 Vitis vinifera HOM05D003927 ORTHO05D004905 1.2e-42 178.3 108 79.6
Zm00001eb188860 Zea mays HOM05D003927 ORTHO05D004905 4.9e-41 172.9 127 66.1
HPP92_026366 Vanilla planifolia HOM05D003927 ORTHO05D004905 7.1e-40 169.1 87 88.5
Mapoly0019s0078 Marchantia polymorpha HOM05D007300 ORTHO05D009301 2.1e-39 167.5 225 42.2
SEGI_21324 Sequoiadendron giganteum HOM05D003927 ORTHO05D004905 2.7e-39 167.2 102 77.5
Pp3c15_14250 Physcomitrium patens HOM05D007300 ORTHO05D009301 8.7e-38 162.2 233 37.8
HanXRQChr15g0483471 Helianthus annuus HOM05D003927 ORTHO05D004905 1.6e-36 157.9 80 91.2
SEGI_30940 Sequoiadendron giganteum HOM05D003927 ORTHO05D004905 1.2e-34 151.8 84 81.0
SEGI_01058 Sequoiadendron giganteum HOM05D003927 ORTHO05D004905 9.9e-34 148.7 103 68.9
SEGI_28054 Sequoiadendron giganteum HOM05D003927 ORTHO05D022820 9.3e-32 142.1 111 63.1
VMungo1309G2465 Vigna mungo HOM05D003927 ORTHO05D022820 2.0e-26 124.4 104 66.3
Sp2g07060 Schrenkiella parvula HOM05D003281 ORTHO05D004128 2.5e-21 107.5 63 77.8
Cre16.g696000 Chlamydomonas reinhardtii HOM05D003927 ORTHO05D138947 3.1e-19 100.5 472 27.3
Zm00001eb018150 Zea mays HOM05D003927 ORTHO05D001645 1.2e-18 98.6 70 61.4
Gohir.A03G217950 Gossypium hirsutum HOM05D003927 ORTHO05D022820 5.8e-18 96.3 62 67.7
SpUn0157_0030 Schrenkiella parvula HOM05D003927 ORTHO05D004905 5.0e-17 93.2 56 73.2
HanXRQChr02g0052471 Helianthus annuus HOM05D003927 ORTHO05D022820 1.6e-12 78.2 67 59.7
HanXRQChr08g0234841 Helianthus annuus HOM05D003927 ORTHO05D022820 4.8e-12 76.6 50 72.0
CBR_g38016 Chara braunii HOM05D004195 ORTHO05D005309 3.4e-10 70.5 241 27.4
SEGI_38698 Sequoiadendron giganteum HOM05D007300 ORTHO05D009301 1.7e-09 68.2 202 27.2
CARHR125140 Cardamine hirsuta HOM05D003927 ORTHO05D004905 2.2e-09 67.8 45 64.4
Peaxi162Scf00298g00083 Petunia axillaris HOM05D003927 ORTHO05D004905 2.2e-09 67.8 44 72.7
QL11p013429 Quercus lobata HOM05D003927 ORTHO05D022820 6.5e-09 66.2 39 79.5
HanXRQChr11g0327571 Helianthus annuus HOM05D003927 ORTHO05D227544 1.1e-08 65.5 46 67.4
Zm00001eb346020 Zea mays HOM05D001403 ORTHO05D001313 3.6e-07 60.5 39 61.5
Lj9A712T61 Lonicera japonica HOM05D003927 ORTHO05D235498 6.1e-07 59.7 89 48.3


User provided reference genes

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