Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1C1143T1 Lonicera japonica HOM05D003643 ORTHO05D005001 5.5e-292 1006.9 505 100.0
Actinidia22386 Actinidia chinensis HOM05D003643 ORTHO05D005001 1.4e-231 806.2 496 81.0
Dinv35809 Davidia involucrata HOM05D003643 ORTHO05D005001 1.9e-231 805.8 488 81.1
GSVIVG01012096001 Vitis vinifera HOM05D003643 ORTHO05D005001 3.3e-228 795.0 487 80.7
Potri.004G075600 Populus trichocarpa HOM05D003643 ORTHO05D005001 6.8e-226 787.3 499 78.4
Cpa.g.sc178.8 Carica papaya HOM05D003643 ORTHO05D005001 2.0e-225 785.8 499 77.4
Cfa023544 Carpinus fangiana HOM05D003643 ORTHO05D005001 2.0e-225 785.8 494 78.9
Atru.chr1.1970 Acer truncatum HOM05D003643 ORTHO05D005001 2.6e-225 785.4 486 78.4
Ca_18772_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 3.4e-225 785.0 499 77.8
Glyma.20G021900 Glycine max HOM05D003643 ORTHO05D005001 4.9e-224 781.2 489 77.9
MD05G1254800 Malus domestica HOM05D003643 ORTHO05D005001 1.1e-223 780.0 494 77.7
Prupe.4G109100 Prunus persica HOM05D003643 ORTHO05D005001 1.4e-223 779.6 496 76.8
CiPaw.03G114100 Carya illinoinensis HOM05D003643 ORTHO05D005001 7.1e-223 777.3 499 76.2
PGR083G1065 Punica granatum HOM05D003643 ORTHO05D005001 9.2e-223 776.9 493 77.5
CSS0044821 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 3.5e-222 775.0 497 76.7
TWI77G0757 Tripterygium wilfordii HOM05D003643 ORTHO05D005001 1.7e-221 772.7 493 77.5
MD10G1234900 Malus domestica HOM05D003643 ORTHO05D005001 3.9e-221 771.5 490 76.9
Sabra04G0050300 Salix brachista HOM05D003643 ORTHO05D005001 7.3e-220 767.3 502 77.1
Lj1g0022937 Lotus japonicus HOM05D003643 ORTHO05D005001 1.2e-219 766.5 491 76.6
Psat0s5231g0040 Pisum sativum HOM05D003643 ORTHO05D005001 4.7e-219 764.6 492 77.2
VMungo0251G0454 Vigna mungo HOM05D003643 ORTHO05D005001 4.7e-219 764.6 488 77.5
Glyma.07G222900 Glycine max HOM05D003643 ORTHO05D005001 6.2e-219 764.2 492 77.0
Eucgr.D01040 Eucalyptus grandis HOM05D003643 ORTHO05D005001 8.1e-219 763.8 504 75.4
Lj1g0023184 Lotus japonicus HOM05D003643 ORTHO05D005001 1.8e-218 762.7 489 76.3
Nitab4.5_0002056g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 2.3e-218 762.3 497 75.7
Phvul.L009001 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.3e-218 762.3 492 77.4
vmacro11251 Vaccinium macrocarpon HOM05D003643 ORTHO05D005001 2.3e-218 762.3 515 74.6
Cc09_g06330 Coffea canephora HOM05D003643 ORTHO05D005001 3.1e-218 761.9 490 77.1
Oeu060347.1 Olea europaea HOM05D003643 ORTHO05D005001 4.0e-218 761.5 485 76.7
Phvul.L001601 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 6.8e-218 760.8 492 77.2
HanXRQChr07g0189641 Helianthus annuus HOM05D003643 ORTHO05D005001 8.9e-218 760.4 483 77.4
Phvul.003G000252 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.2e-217 760.0 491 77.2
Sopen02g018250 Solanum pennellii HOM05D003643 ORTHO05D005001 2.0e-217 759.2 490 75.5
Thecc.04G162500 Theobroma cacao HOM05D003643 ORTHO05D005001 3.4e-217 758.4 495 76.6
Solyc02g069120.3 Solanum lycopersicum HOM05D003643 ORTHO05D005001 9.9e-217 756.9 490 75.1
TAR365G0076 Trochodendron aralioides HOM05D003643 ORTHO05D005001 2.2e-216 755.7 490 76.5
Psat6g043080 Pisum sativum HOM05D003643 ORTHO05D005001 4.9e-216 754.6 492 76.6
THA.LOC104822105 Tarenaya hassleriana HOM05D003643 ORTHO05D005001 4.9e-216 754.6 492 75.2
RcHm_v2.0_Chr5g0019781 Rosa chinensis HOM05D003643 ORTHO05D005001 6.4e-216 754.2 490 76.5
PGSC0003DMG400010363 Solanum tuberosum HOM05D003643 ORTHO05D005001 6.4e-216 754.2 490 74.9
Lsat_1_v5_gn_5_36401 Lactuca sativa HOM05D003643 ORTHO05D005001 1.4e-215 753.1 481 77.3
SGA_v2.0_scaffold298G47674 Striga asiatica HOM05D003643 ORTHO05D005001 1.9e-215 752.7 503 74.0
BcaB01g04707 Brassica carinata HOM05D003643 ORTHO05D005001 5.4e-215 751.1 488 74.6
FvH4_3g12070 Fragaria vesca HOM05D003643 ORTHO05D005001 5.4e-215 751.1 490 75.3
CAN.G1222.6 Capsicum annuum HOM05D003643 ORTHO05D005001 7.1e-215 750.7 490 74.7
TPR.G20995 Trifolium pratense HOM05D003643 ORTHO05D005001 9.2e-215 750.4 497 75.3
Lalb_Chr16g0385301 Lupinus albus HOM05D003643 ORTHO05D005001 1.2e-214 750.0 493 75.7
FAN21G1938 Fragaria x ananassa HOM05D003643 ORTHO05D005001 2.7e-214 748.8 490 74.9
BcaC04g19578 Brassica carinata HOM05D003643 ORTHO05D005001 6.0e-214 747.7 491 74.5
Migut.M01969 Erythranthe guttata HOM05D003643 ORTHO05D005001 7.8e-214 747.3 481 77.1
FAN25G0143 Fragaria x ananassa HOM05D003643 ORTHO05D005001 1.0e-213 746.9 490 74.9
CsaV3_1G046560 Cucumis sativus L. HOM05D003643 ORTHO05D005001 1.3e-213 746.5 490 74.1
Sc22g0000430 Simmondsia chinensis HOM05D003643 ORTHO05D005001 1.3e-213 746.5 487 74.7
C09p54110 Brassica napus HOM05D003643 ORTHO05D005001 1.7e-213 746.1 491 74.1
BolC9t58281H Brassica oleracea HOM05D003643 ORTHO05D005001 1.7e-213 746.1 491 74.1
AL6G33500 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 3.9e-213 745.0 488 74.6
Thhalv10013358m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 3.9e-213 745.0 488 74.0
BcaB08g36427 Brassica carinata HOM05D003643 ORTHO05D005001 5.1e-213 744.6 501 73.5
Sed0017297 Sechium edule HOM05D003643 ORTHO05D005001 5.1e-213 744.6 489 74.8
AT5G22480 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 6.6e-213 744.2 488 74.6
A03p10790 Brassica napus HOM05D003643 ORTHO05D005001 1.1e-212 743.4 488 74.2
Carub.0006s2022 Capsella rubella HOM05D003643 ORTHO05D005001 1.1e-212 743.4 493 73.2
A10p18340 Brassica napus HOM05D003643 ORTHO05D005001 1.5e-212 743.0 491 73.9
BraA10t43914Z Brassica rapa HOM05D003643 ORTHO05D005001 1.9e-212 742.7 491 73.9
BcaC01g06578 Brassica carinata HOM05D003643 ORTHO05D005001 4.3e-212 741.5 488 74.2
CANSAT21G2447 Cannabis sativa HOM05D003643 ORTHO05D005001 2.1e-211 739.2 487 74.5
arahy.Tifrunner.gnm1.ann1.PVMC8E Arachis hypogaea HOM05D003643 ORTHO05D005001 2.8e-211 738.8 499 73.5
MELO3C021772.2 Cucumis melo HOM05D003643 ORTHO05D005001 2.8e-211 738.8 490 73.7
CARHR191050 Cardamine hirsuta HOM05D003643 ORTHO05D005001 3.6e-211 738.4 493 73.0
CARHR215770 Cardamine hirsuta HOM05D003643 ORTHO05D005001 3.6e-211 738.4 497 73.6
BcaC07g37705 Brassica carinata HOM05D003643 ORTHO05D005001 4.7e-211 738.0 494 74.1
Gohir.D10G121400 Gossypium hirsutum HOM05D003643 ORTHO05D005001 4.7e-211 738.0 497 74.8
Gorai.011G133500 Gossypium raimondii HOM05D003643 ORTHO05D005001 4.7e-211 738.0 497 74.8
Duzib268G1178 Durio zibethinus HOM05D003643 ORTHO05D005001 8.1e-211 737.3 509 72.7
Thhalv10027733m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 1.8e-210 736.1 488 73.4
Medtr4g083780 Medicago truncatula HOM05D003643 ORTHO05D005001 2.4e-210 735.7 487 74.9
SalBow8G4557 Salvia bowleyana HOM05D003643 ORTHO05D005001 2.4e-210 735.7 484 75.4
SalBow8G5428 Salvia bowleyana HOM05D003643 ORTHO05D005001 2.4e-210 735.7 484 75.4
SpUn0005_0160 Schrenkiella parvula HOM05D003643 ORTHO05D005001 3.1e-210 735.3 491 73.3
AT5G37340 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 1.5e-209 733.0 493 73.4
AL7G45920 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 3.4e-209 731.9 488 74.2
ECA238G3555 Erigeron canadensis HOM05D003643 ORTHO05D005001 4.4e-209 731.5 482 75.7
BraA03t10388Z Brassica rapa HOM05D003643 ORTHO05D005001 7.6e-209 730.7 499 72.1
HanXRQChr14g0433091 Helianthus annuus HOM05D003643 ORTHO05D005001 9.9e-209 730.3 481 75.9
BraA08t33014Z Brassica rapa HOM05D003643 ORTHO05D005001 1.3e-208 729.9 498 72.9
A08p10150 Brassica napus HOM05D003643 ORTHO05D005001 1.7e-208 729.6 494 73.1
DCAR_007797 Daucus carota HOM05D003643 ORTHO05D005001 2.2e-208 729.2 503 74.8
Rhsim04G0157300 Rhododendron simsii HOM05D003643 ORTHO05D005001 2.9e-208 728.8 530 71.7
Sp6g22770 Schrenkiella parvula HOM05D003643 ORTHO05D005001 2.9e-208 728.8 488 73.6
BolC3t13712H Brassica oleracea HOM05D003643 ORTHO05D005001 8.4e-208 727.2 491 73.1
BcaB04g18097 Brassica carinata HOM05D003643 ORTHO05D005001 1.1e-207 726.9 484 73.8
COL.COLO4_08070 Corchorus olitorius HOM05D003643 ORTHO05D005001 2.4e-207 725.7 530 70.4
Nn7g37591 Nelumbo nucifera HOM05D003643 ORTHO05D005001 2.3e-205 719.2 491 72.3
FAN16G1159 Fragaria x ananassa HOM05D003643 ORTHO05D005001 3.3e-204 715.3 490 72.9
ECA246G0187 Erigeron canadensis HOM05D003643 ORTHO05D005001 2.1e-203 712.6 494 73.3
Lj1g0023481 Lotus japonicus HOM05D003643 ORTHO05D005001 8.1e-203 710.7 491 72.9
AUR62010551 Chenopodium quinoa HOM05D003643 ORTHO05D005001 1.2e-201 706.8 485 70.5
Oeu052674.3 Olea europaea HOM05D003643 ORTHO05D005001 3.8e-200 701.8 457 76.6
CDE02G0779 Ceratophyllum demersum HOM05D003643 ORTHO05D005001 6.4e-200 701.0 490 71.0
arahy.Tifrunner.gnm1.ann1.EU78CH Arachis hypogaea HOM05D003643 ORTHO05D005001 2.3e-197 692.6 499 70.5
unitig_32.g11672 Utricularia gibba HOM05D003643 ORTHO05D005001 6.6e-197 691.0 488 69.9
SGA_v2.0_scaffold95G28766 Striga asiatica HOM05D003643 ORTHO05D005001 1.5e-196 689.9 522 68.0
Hund14697 Selenicereus undatus HOM05D003643 ORTHO05D005001 5.6e-196 688.0 498 68.7
PSO675G9021 Papaver somniferum HOM05D003643 ORTHO05D005001 3.1e-194 682.2 495 68.9
Hund01937 Selenicereus undatus HOM05D003643 ORTHO05D005001 1.7e-192 676.4 484 69.2
MBI07_g18519_MAGBIO Magnolia biondii HOM05D003643 ORTHO05D005001 2.9e-192 675.6 491 69.5
Zm00001eb058120 Zea mays HOM05D003643 ORTHO05D005001 1.1e-191 673.7 497 65.6
Aa31LG9G17620 Aethionema arabicum HOM05D003643 ORTHO05D005001 2.4e-191 672.5 523 66.2
Os08g0471900 Oryza sativa ssp. japonica HOM05D003643 ORTHO05D005001 5.5e-191 671.4 498 65.1
ATR0743G136 Amborella trichopoda HOM05D003643 ORTHO05D005001 1.2e-190 670.2 495 67.5
Manes.01G122000 Manihot esculenta HOM05D003643 ORTHO05D005001 2.1e-190 669.5 503 69.0
EL10Ac5g12673 Beta vulgaris HOM05D003643 ORTHO05D005001 3.5e-190 668.7 566 62.5
Lsat_1_v5_gn_2_29841 Lactuca sativa HOM05D003643 ORTHO05D005001 5.6e-188 661.4 494 68.6
HPP92_015903 Vanilla planifolia HOM05D003643 ORTHO05D005001 7.4e-188 661.0 497 66.2
AUR62017342 Chenopodium quinoa HOM05D003643 ORTHO05D005001 2.4e-186 656.0 579 58.5
Nitab4.5_0002463g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 2.4e-186 656.0 497 68.6
Peaxi162Scf00128g01142 Petunia axillaris HOM05D003643 ORTHO05D005001 5.3e-186 654.8 489 68.9
Pp3c15_5070 Physcomitrium patens HOM05D003643 ORTHO05D005001 7.1e-183 644.4 500 62.8
TPR.G20778 Trifolium pratense HOM05D003643 ORTHO05D005001 4.6e-182 641.7 489 66.7
Aqoxy5G01635 Aquilegia oxysepala HOM05D003643 ORTHO05D005001 6.0e-182 641.3 490 65.1
TPR.G9485 Trifolium pratense HOM05D003643 ORTHO05D005001 1.0e-181 640.6 464 70.0
Mapoly0085s0072 Marchantia polymorpha HOM05D003643 ORTHO05D005001 8.7e-181 637.5 499 62.3
CSS0005005 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 1.7e-176 623.2 396 78.3
Ca_20206_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 2.9e-176 622.5 486 65.2
Nitab4.5_0004569g0010 Nicotiana tabacum HOM05D003643 ORTHO05D005001 1.5e-172 610.1 499 65.1
SMO203G0021 Selaginella moellendorffii HOM05D003643 ORTHO05D005001 1.3e-160 570.5 456 60.5
CBR_g6566 Chara braunii HOM05D003643 ORTHO05D005001 2.9e-160 569.3 503 57.1
Ciclev10003667m.g Citrus clementina HOM05D003643 ORTHO05D005001 3.2e-159 565.8 380 74.7
PSO017G1140 Papaver somniferum HOM05D003643 ORTHO05D005001 9.7e-156 554.3 397 70.3
CBR_g34896 Chara braunii HOM05D003643 ORTHO05D005001 2.4e-154 549.7 493 56.6
Gohir.1Z049309 Gossypium hirsutum HOM05D003643 ORTHO05D005001 2.7e-150 536.2 356 75.6
Phvul.003G000226 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 3.6e-150 535.8 343 77.8
Phvul.002G099300 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 4.7e-150 535.4 399 70.4
ClCG01G009340 Citrullus lanatus HOM05D003643 ORTHO05D005001 1.8e-149 533.5 358 72.9
QL07p008150 Quercus lobata HOM05D003643 ORTHO05D005001 4.4e-148 528.9 547 53.4
Ah.12g057940 Amaranthus hybridus HOM05D003643 ORTHO05D005001 1.1e-143 514.2 393 67.4
BolC8t48076H Brassica oleracea HOM05D003643 ORTHO05D005001 2.1e-142 510.0 368 71.5
Peaxi162Scf00149g01022 Petunia axillaris HOM05D003643 ORTHO05D005001 6.8e-141 505.0 357 72.3
CBR_g6568 Chara braunii HOM05D003643 ORTHO05D005001 4.3e-127 459.1 467 51.4
Gohir.1Z049318 Gossypium hirsutum HOM05D003643 ORTHO05D005001 1.2e-126 457.6 304 75.7
C03p12370 Brassica napus HOM05D003643 ORTHO05D005001 1.4e-122 444.1 299 73.9
Phvul.L001739 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 4.6e-121 439.1 407 60.0
Phvul.003G000330 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 8.0e-118 428.3 273 78.8
Haze_13620 Corylus avellana HOM05D003643 ORTHO05D005001 3.7e-115 419.5 275 75.6
Phvul.003G000304 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 3.7e-115 419.5 281 74.0
Actinidia36045 Actinidia chinensis HOM05D003643 ORTHO05D005001 8.1e-94 348.6 233 74.7
Phvul.003G000278 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 4.5e-84 316.2 189 81.0
Atru.chr3.103 Acer truncatum HOM05D003643 ORTHO05D005001 4.2e-82 309.7 251 66.9
Cfa025656 Carpinus fangiana HOM05D003643 ORTHO05D005001 2.5e-79 300.4 487 37.0
DCAR_017792 Daucus carota HOM05D003643 ORTHO05D005001 2.5e-79 300.4 204 75.5
Phvul.L008901 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.9e-74 284.3 182 76.4
SEGI_34727 Sequoiadendron giganteum HOM05D003643 ORTHO05D005001 4.9e-67 259.6 200 64.0
Psat3g171960 Pisum sativum HOM05D003643 ORTHO05D005001 5.0e-59 233.0 231 56.7
Psat6g162200 Pisum sativum HOM05D003643 ORTHO05D005001 6.7e-56 222.6 266 48.1
BolC8t48075H Brassica oleracea HOM05D003643 ORTHO05D018815 2.8e-54 217.2 135 74.8
Lsat_1_v5_gn_5_36361 Lactuca sativa HOM05D003643 ORTHO05D018815 6.9e-53 212.6 134 77.6
ClCG01G009350 Citrullus lanatus HOM05D003643 ORTHO05D005001 1.2e-52 211.8 131 77.1
Atru.chr8.2696 Acer truncatum HOM05D003643 ORTHO05D005001 1.6e-49 201.4 262 49.2
Atru.chr8.2585 Acer truncatum HOM05D003643 ORTHO05D005001 2.3e-48 197.6 153 66.7
Peaxi162Scf00149g01017 Petunia axillaris HOM05D003643 ORTHO05D018815 1.1e-47 195.3 133 71.4
CSS0009011 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 1.2e-44 185.3 114 78.9
ATR0712G001 Amborella trichopoda HOM05D003643 ORTHO05D023464 2.6e-39 167.5 111 71.2
Phvul.L001639 Phaseolus vulgaris HOM05D003643 ORTHO05D034905 3.7e-38 163.7 92 80.4
Phvul.L008801 Phaseolus vulgaris HOM05D003643 ORTHO05D034905 3.7e-38 163.7 92 80.4
CSS0015856 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 4.8e-38 163.3 114 71.1
CBR_g12037 Chara braunii HOM05D003643 ORTHO05D005001 1.6e-33 148.3 205 41.5
Lsat_1_v5_gn_5_135000 Lactuca sativa HOM05D003643 ORTHO05D005001 2.2e-27 127.9 97 70.1
Gohir.A10G145401 Gossypium hirsutum HOM05D003643 ORTHO05D018815 3.0e-24 117.5 69 84.1
Haze_13619 Corylus avellana HOM05D003643 ORTHO05D034905 1.5e-23 115.2 107 58.9
Haze_13621 Corylus avellana HOM05D003643 ORTHO05D018815 2.6e-23 114.4 74 74.3
ClCG01G009330 Citrullus lanatus HOM05D003643 ORTHO05D018815 5.7e-23 113.2 64 81.2
Cc11_g00920 Coffea canephora HOM05D003643 ORTHO05D005001 1.1e-21 109.0 67 79.1
CSS0023685 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D018815 1.4e-21 108.6 68 75.0
Lsat_1_v5_gn_5_54460 Lactuca sativa HOM05D003643 ORTHO05D005001 3.1e-21 107.5 188 39.9
CSS0030804 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 2.7e-20 104.4 65 76.9
Psat0s3903g0040 Pisum sativum HOM05D003643 ORTHO05D005001 7.7e-20 102.8 65 81.5
CSS0024414 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 2.3e-19 101.3 65 73.8
CSS0049868 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 3.8e-19 100.5 65 73.8
CSS0012788 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 1.8e-16 91.7 77 62.3
CSS0032340 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D018815 9.2e-13 79.3 46 73.9
HanXRQChr06g0180401 Helianthus annuus HOM05D003643 ORTHO05D005001 4.7e-09 67.0 37 75.7


User provided reference genes

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