Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1C1068G11 Lonicera japonica HOM05D004500 ORTHO05D005775 0.0e+00 2468.0 1280 100.0
Dinv22199 Davidia involucrata HOM05D004500 ORTHO05D005775 0.0e+00 1838.9 1340 73.6
DCAR_023834 Daucus carota HOM05D004500 ORTHO05D005775 0.0e+00 1760.7 1335 70.2
TAR623G1318 Trochodendron aralioides HOM05D004500 ORTHO05D005775 0.0e+00 1729.9 1341 68.6
HanXRQChr12g0380331 Helianthus annuus HOM05D004500 ORTHO05D005775 0.0e+00 1723.4 1347 67.5
ECA233G3879 Erigeron canadensis HOM05D004500 ORTHO05D005775 0.0e+00 1719.9 1339 67.7
Cfa009915 Carpinus fangiana HOM05D004500 ORTHO05D005775 0.0e+00 1703.7 1341 67.8
QL01p016442 Quercus lobata HOM05D004500 ORTHO05D005775 0.0e+00 1699.5 1341 67.4
Lsat_1_v5_gn_5_70881 Lactuca sativa HOM05D004500 ORTHO05D005775 0.0e+00 1696.4 1339 67.1
Thecc.09G254300 Theobroma cacao HOM05D004500 ORTHO05D005775 0.0e+00 1694.1 1341 67.1
Migut.D00681 Erythranthe guttata HOM05D004500 ORTHO05D005775 0.0e+00 1692.9 1342 66.8
Sopen11g024300 Solanum pennellii HOM05D004500 ORTHO05D005775 0.0e+00 1689.1 1339 66.5
Manes.02G138300 Manihot esculenta HOM05D004500 ORTHO05D005775 0.0e+00 1687.2 1341 67.0
Actinidia06989 Actinidia chinensis HOM05D004500 ORTHO05D005775 0.0e+00 1682.5 1334 68.6
Duzib168G0672 Durio zibethinus HOM05D004500 ORTHO05D005775 0.0e+00 1674.4 1343 66.3
CAN.G1050.5 Capsicum annuum HOM05D004500 ORTHO05D005775 0.0e+00 1672.9 1338 65.8
Atru.chr3.2856 Acer truncatum HOM05D004500 ORTHO05D005775 0.0e+00 1671.0 1341 66.9
Sabra16G0169000 Salix brachista HOM05D004500 ORTHO05D005775 0.0e+00 1670.2 1339 66.2
Atru.chr3.2854 Acer truncatum HOM05D004500 ORTHO05D005775 0.0e+00 1669.1 1341 67.0
CiPaw.13G147900 Carya illinoinensis HOM05D004500 ORTHO05D005775 0.0e+00 1668.3 1341 66.4
MSTRG.21337 Avicennia marina HOM05D004500 ORTHO05D005775 0.0e+00 1665.2 1340 66.0
COL.COLO4_06617 Corchorus olitorius HOM05D004500 ORTHO05D005775 0.0e+00 1662.5 1344 66.0
Nitab4.5_0000492g0190 Nicotiana tabacum HOM05D004500 ORTHO05D005775 0.0e+00 1662.1 1334 65.4
Ciclev10014018m.g Citrus clementina HOM05D004500 ORTHO05D005775 0.0e+00 1660.2 1341 66.1
Cc01_g06520 Coffea canephora HOM05D004500 ORTHO05D005775 0.0e+00 1660.2 1340 67.1
CANSAT54G2073 Cannabis sativa HOM05D004500 ORTHO05D005775 0.0e+00 1659.8 1341 65.4
Potri.001G274500 Populus trichocarpa HOM05D004500 ORTHO05D005775 0.0e+00 1647.5 1338 65.4
Prupe.4G270300 Prunus persica HOM05D004500 ORTHO05D005775 0.0e+00 1644.0 1341 65.6
Gorai.006G122400 Gossypium raimondii HOM05D004500 ORTHO05D005775 0.0e+00 1643.6 1340 65.6
TWI75G0701 Tripterygium wilfordii HOM05D004500 ORTHO05D005775 0.0e+00 1643.6 1338 65.8
Gohir.A09G108500 Gossypium hirsutum HOM05D004500 ORTHO05D005775 0.0e+00 1642.9 1340 65.7
SalBow6G2693 Salvia bowleyana HOM05D004500 ORTHO05D005775 0.0e+00 1641.7 1344 65.3
CSS0026558 Camellia sinensis var. sinensis HOM05D004500 ORTHO05D005775 0.0e+00 1640.6 1369 66.1
LjContig00564g0025272 Lotus japonicus HOM05D004500 ORTHO05D005775 0.0e+00 1630.2 1338 64.6
Nn7g36895 Nelumbo nucifera HOM05D004500 ORTHO05D005775 0.0e+00 1619.8 1340 64.3
Gohir.D09G105200 Gossypium hirsutum HOM05D004500 ORTHO05D005775 0.0e+00 1617.4 1340 64.9
Ca_06188_v3 Cicer arietinum L. HOM05D004500 ORTHO05D005775 0.0e+00 1615.9 1335 64.3
Glyma.14G036800 Glycine max HOM05D004500 ORTHO05D005775 0.0e+00 1615.9 1335 64.3
PSO339G3895 Papaver somniferum HOM05D004500 ORTHO05D005775 0.0e+00 1615.1 1340 64.8
MD03G1157000 Malus domestica HOM05D004500 ORTHO05D005775 0.0e+00 1611.3 1341 64.7
arahy.Tifrunner.gnm1.ann1.VEQ9JC Arachis hypogaea HOM05D004500 ORTHO05D005775 0.0e+00 1605.9 1339 63.6
arahy.Tifrunner.gnm1.ann1.G3VBDM Arachis hypogaea HOM05D004500 ORTHO05D005775 0.0e+00 1605.5 1339 63.4
Lalb_Chr10g0106121 Lupinus albus HOM05D004500 ORTHO05D005775 0.0e+00 1605.5 1339 63.9
TPR.G16395 Trifolium pratense HOM05D004500 ORTHO05D005775 0.0e+00 1604.0 1336 64.1
RcHm_v2.0_Chr5g0051931 Rosa chinensis HOM05D004500 ORTHO05D005775 0.0e+00 1600.9 1341 64.5
Aqoxy1G00409 Aquilegia oxysepala HOM05D004500 ORTHO05D005775 0.0e+00 1598.2 1341 63.3
THA.LOC104800461 Tarenaya hassleriana HOM05D004500 ORTHO05D005775 0.0e+00 1595.5 1339 62.7
FvH4_3g28920 Fragaria vesca HOM05D004500 ORTHO05D005775 0.0e+00 1592.8 1347 63.9
FAN11G1622 Fragaria x ananassa HOM05D004500 ORTHO05D005775 0.0e+00 1592.0 1347 63.8
FAN21G1747 Fragaria x ananassa HOM05D004500 ORTHO05D005775 0.0e+00 1587.0 1341 64.1
Haze_23271 Corylus avellana HOM05D004500 ORTHO05D005775 0.0e+00 1583.2 1391 62.4
Sc09g0001130 Simmondsia chinensis HOM05D004500 ORTHO05D005775 0.0e+00 1583.2 1340 63.8
Phvul.008G203200 Phaseolus vulgaris HOM05D004500 ORTHO05D005775 0.0e+00 1582.0 1314 63.4
SGA_v2.0_scaffold29G12209 Striga asiatica HOM05D004500 ORTHO05D005775 0.0e+00 1570.8 1373 62.4
Eucgr.J00673 Eucalyptus grandis HOM05D004500 ORTHO05D005775 0.0e+00 1563.9 1343 62.7
Medtr5g089000 Medicago truncatula HOM05D004500 ORTHO05D005775 0.0e+00 1563.1 1337 62.8
MELO3C014542.2 Cucumis melo HOM05D004500 ORTHO05D005775 0.0e+00 1561.6 1338 61.6
MBI19_g07497_MAGBIO Magnolia biondii HOM05D004500 ORTHO05D005775 0.0e+00 1560.4 1342 63.4
RcHm_v2.0_Chr5g0051871 Rosa chinensis HOM05D004500 ORTHO05D005775 0.0e+00 1558.9 1342 63.3
CARHR118960 Cardamine hirsuta HOM05D004500 ORTHO05D005775 0.0e+00 1556.6 1341 61.7
C03p92100 Brassica napus HOM05D004500 ORTHO05D005775 0.0e+00 1551.2 1346 61.2
AL4G19970 Arabidopsis lyrata HOM05D004500 ORTHO05D005775 0.0e+00 1550.8 1339 61.4
A08p01100 Brassica napus HOM05D004500 ORTHO05D005775 0.0e+00 1547.3 1343 61.2
Carub.0004s0721 Capsella rubella HOM05D004500 ORTHO05D005775 0.0e+00 1546.6 1346 60.8
EL10Ac4g10085 Beta vulgaris HOM05D004500 ORTHO05D005775 0.0e+00 1545.8 1342 62.1
CsaV3_6G038790 Cucumis sativus L. HOM05D004500 ORTHO05D005775 0.0e+00 1544.3 1344 61.2
AT2G26780 Arabidopsis thaliana HOM05D004500 ORTHO05D005775 0.0e+00 1543.1 1339 61.1
ClCG02G022670 Citrullus lanatus HOM05D004500 ORTHO05D005775 0.0e+00 1542.7 1342 61.1
Sed0001243 Sechium edule HOM05D004500 ORTHO05D005775 0.0e+00 1541.6 1341 60.6
Solyc11g062310.2 Solanum lycopersicum HOM05D004500 ORTHO05D005775 0.0e+00 1538.5 1152 69.7
Sp1g40640 Schrenkiella parvula HOM05D004500 ORTHO05D005775 0.0e+00 1537.3 1344 60.6
Thhalv10011180m.g Eutrema salsugineum HOM05D004500 ORTHO05D005775 0.0e+00 1536.5 1340 60.9
Peaxi162Scf00029g02524 Petunia axillaris HOM05D004500 ORTHO05D005775 0.0e+00 1536.5 1152 69.6
Oeu061692.5 Olea europaea HOM05D004500 ORTHO05D005775 0.0e+00 1528.1 1416 60.2
GSVIVG01037358001 Vitis vinifera HOM05D004500 ORTHO05D005775 0.0e+00 1523.8 1132 71.0
Aa31LG5G9010 Aethionema arabicum HOM05D004500 ORTHO05D005775 0.0e+00 1521.5 1339 60.1
BolC3t21527H Brassica oleracea HOM05D004500 ORTHO05D005775 0.0e+00 1520.4 1335 60.7
AUR62000221 Chenopodium quinoa HOM05D004500 ORTHO05D005775 0.0e+00 1520.4 1346 61.4
FAN25G3650 Fragaria x ananassa HOM05D004500 ORTHO05D005775 0.0e+00 1515.4 1341 61.6
BraA08t32166Z Brassica rapa HOM05D004500 ORTHO05D005775 0.0e+00 1514.6 1335 60.4
AUR62006566 Chenopodium quinoa HOM05D004500 ORTHO05D005775 0.0e+00 1511.1 1343 61.1
Psat0s2305g0080 Pisum sativum HOM05D004500 ORTHO05D005775 0.0e+00 1508.4 1315 62.1
Hund07422 Selenicereus undatus HOM05D004500 ORTHO05D005775 0.0e+00 1507.7 1510 55.8
Nitab4.5_0002026g0140 Nicotiana tabacum HOM05D004500 ORTHO05D005775 0.0e+00 1484.9 1122 69.3
ATR0307G114 Amborella trichopoda HOM05D004500 ORTHO05D005775 0.0e+00 1467.2 1336 60.3
Ah.06g194800 Amaranthus hybridus HOM05D004500 ORTHO05D005775 0.0e+00 1398.3 1193 62.6
Zm00001eb196280 Zea mays HOM05D004500 ORTHO05D005775 0.0e+00 1364.4 1330 55.6
unitig_578.g16660 Utricularia gibba HOM05D004500 ORTHO05D005775 0.0e+00 1322.4 1343 54.9
CDE02G2423 Ceratophyllum demersum HOM05D004500 ORTHO05D005775 0.0e+00 1124.0 1053 57.8
Os12g0134200 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 0.0e+00 1082.0 942 60.1
AagrBONN_evm.TU.Sc2ySwM_117.694 Anthoceros agrestis HOM05D004500 ORTHO05D005775 1.8e-311 1073.2 1396 43.1
Mapoly0009s0155 Marchantia polymorpha HOM05D004500 ORTHO05D005775 2.8e-300 1035.8 1397 42.5
Pp3c1_28010 Physcomitrium patens HOM05D004500 ORTHO05D005775 1.4e-288 996.9 1400 42.2
SMO228G0054 Selaginella moellendorffii HOM05D004500 ORTHO05D005775 3.5e-279 965.7 1117 47.5
SEGI_14316 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 7.7e-266 921.4 887 56.1
Rhsim13G0205000 Rhododendron simsii HOM05D004500 ORTHO05D005775 2.4e-259 899.8 648 73.8
Cpa.g.sc34.185 Carica papaya HOM05D004500 ORTHO05D005775 2.2e-220 770.4 677 61.3
BcaB04g17016 Brassica carinata HOM05D004500 ORTHO05D005775 2.3e-193 680.6 821 49.9
Psat7g231400 Pisum sativum HOM05D004500 ORTHO05D005775 5.4e-187 659.4 599 60.3
Os11g0137300 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 8.4e-180 635.6 601 56.1
Cpa.g.sc34.186 Carica papaya HOM05D004500 ORTHO05D005775 3.2e-179 633.6 510 67.1
CBR_g37490 Chara braunii HOM05D004500 ORTHO05D005775 7.1e-179 632.5 1040 36.6
MCO04G062 Micromonas commoda HOM05D004500 ORTHO05D005775 1.4e-163 581.6 980 36.6
Psat7g231320 Pisum sativum HOM05D004500 ORTHO05D005775 7.7e-157 559.3 449 65.5
vmacro04081 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 5.1e-153 546.6 345 79.1
PRCOL_00001646 Prasinoderma coloniale HOM05D004500 ORTHO05D005775 3.7e-143 513.8 1184 32.3
Psat6g216840 Pisum sativum HOM05D004500 ORTHO05D005775 9.7e-128 462.6 315 72.4
Cre04.g217935 Chlamydomonas reinhardtii HOM05D004500 ORTHO05D005775 3.0e-113 414.5 693 36.8
Cfa026787 Carpinus fangiana HOM05D004500 ORTHO05D005775 8.9e-89 333.2 776 30.0
vmacro04082 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 1.1e-78 299.7 158 91.8
HPP92_022829 Vanilla planifolia HOM05D004500 ORTHO05D005775 6.0e-77 293.9 387 45.0
vmacro04079 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 5.6e-75 287.3 270 58.9
HPP92_022831 Vanilla planifolia HOM05D004500 ORTHO05D005775 1.8e-52 212.6 373 35.7
Psat6g216720 Pisum sativum HOM05D004500 ORTHO05D005775 1.3e-42 179.9 130 69.2
CDE02G1487 Ceratophyllum demersum HOM05D004500 ORTHO05D028702 1.3e-39 169.9 216 44.4
Solyc11g062300.3 Solanum lycopersicum HOM05D004500 ORTHO05D028702 1.4e-38 166.4 170 50.6
VMungo0647G0474 Vigna mungo HOM05D004500 ORTHO05D005775 5.7e-35 154.5 167 53.3
MELO3C032687.2 Cucumis melo HOM05D004500 ORTHO05D005775 1.3e-31 143.3 189 44.4
arahy.Tifrunner.gnm1.ann1.K04MEX Arachis hypogaea HOM05D004500 ORTHO05D005775 6.1e-29 134.4 154 52.6
SEGI_00521 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 3.9e-28 131.7 153 45.1
Peaxi162Scf00029g02525 Petunia axillaris HOM05D004500 ORTHO05D028702 5.1e-28 131.3 161 43.5
Psat2g099920 Pisum sativum HOM05D001218 ORTHO05D015696 3.3e-27 128.6 88 69.3
Os12g0148400 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 1.8e-25 122.9 174 40.2
Psat2g090360 Pisum sativum HOM05D001218 ORTHO05D015696 4.1e-25 121.7 73 78.1
Psat5g143880 Pisum sativum HOM05D004500 ORTHO05D001434 9.1e-25 120.6 174 43.7
Psat0s1467g0200 Pisum sativum HOM05D004500 ORTHO05D005775 1.2e-24 120.2 176 44.9
SEGI_03367 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 3.2e-22 112.1 130 49.2
CDE02G1339 Ceratophyllum demersum HOM05D004500 ORTHO05D005775 4.2e-22 111.7 112 56.2
SEGI_28959 Sequoiadendron giganteum HOM05D004500 ORTHO05D050968 2.7e-21 109.0 171 40.9
MELO3C033637.2 Cucumis melo HOM05D007110 ORTHO05D000233 3.3e-19 102.1 166 40.4
Nitab4.5_0004629g0080 Nicotiana tabacum HOM05D004500 ORTHO05D028702 1.1e-14 87.0 74 52.7
Psat0s2295g0160 Pisum sativum HOM05D003609 ORTHO05D004185 3.2e-14 85.5 73 56.2
MELO3C035575.2 Cucumis melo HOM05D004500 ORTHO05D005775 1.2e-13 83.6 92 47.8
SEGI_01442 Sequoiadendron giganteum HOM05D004500 ORTHO05D050968 2.3e-12 79.3 115 40.0
Cre04.g217942 Chlamydomonas reinhardtii HOM05D004500 ORTHO05D005775 2.0e-11 76.3 248 27.0
vmacro04080 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 9.4e-06 57.4 37 75.7


User provided reference genes

Program Settings