Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1C1049T4 Lonicera japonica HOM05D007532 ORTHO05D009483 4.3e-77 291.2 142 100.0
DCAR_020715 Daucus carota HOM05D007532 ORTHO05D009483 9.7e-29 130.6 129 51.9
Actinidia32050 Actinidia chinensis HOM05D007532 ORTHO05D009483 6.8e-22 107.8 140 48.6
Dinv31750 Davidia involucrata HOM05D010118 ORTHO05D009483 4.4e-21 105.1 141 48.9
Oeu055526.1 Olea europaea HOM05D007532 ORTHO05D009483 1.3e-20 103.6 154 42.9
Nitab4.5_0000020g0210 Nicotiana tabacum HOM05D007532 ORTHO05D009483 1.7e-20 103.2 161 42.2
Nitab4.5_0006654g0010 Nicotiana tabacum HOM05D007532 ORTHO05D009483 2.2e-20 102.8 161 42.2
TAR623G0884 Trochodendron aralioides HOM05D007532 ORTHO05D009483 2.2e-20 102.8 128 46.9
GSVIVG01033946001 Vitis vinifera HOM05D007532 ORTHO05D009483 8.3e-20 100.9 140 45.7
Actinidia04004 Actinidia chinensis HOM05D007532 ORTHO05D009483 4.1e-19 98.6 134 47.8
QL07p037073 Quercus lobata HOM05D007532 ORTHO05D009483 7.0e-19 97.8 151 41.7
Cfa016678 Carpinus fangiana HOM05D007532 ORTHO05D009483 1.0e-17 94.0 141 42.6
Haze_19695 Corylus avellana HOM05D007532 ORTHO05D009483 6.5e-17 91.3 136 43.4
SalBow5G5402 Salvia bowleyana HOM05D007532 ORTHO05D009483 1.1e-16 90.5 126 43.7
Oeu035652.1 Olea europaea HOM05D007532 ORTHO05D009483 2.5e-16 89.4 164 36.0
Nn6g34736 Nelumbo nucifera HOM05D007532 ORTHO05D009483 4.2e-16 88.6 135 40.0
MSTRG.10404 Avicennia marina HOM05D007532 ORTHO05D009483 1.6e-15 86.7 154 39.0
CiPaw.10G016200 Carya illinoinensis HOM05D007532 ORTHO05D009483 1.6e-15 86.7 139 38.1
Gohir.A09G135100 Gossypium hirsutum HOM05D007532 ORTHO05D009483 2.8e-15 85.9 153 42.5
Manes.09G046800 Manihot esculenta HOM05D007532 ORTHO05D009483 2.8e-15 85.9 148 38.5
TWI74G0748 Tripterygium wilfordii HOM05D007532 ORTHO05D009483 4.7e-15 85.1 121 46.3
Gorai.006G150300 Gossypium raimondii HOM05D007532 ORTHO05D009483 6.1e-15 84.7 151 42.4
Lsat_1_v5_gn_1_57140 Lactuca sativa HOM05D007532 ORTHO05D009483 8.0e-15 84.3 146 39.7
Oeu045039.1 Olea europaea HOM05D007532 ORTHO05D009483 8.0e-15 84.3 150 36.7
Lsat_1_v5_gn_2_55700 Lactuca sativa HOM05D007532 ORTHO05D009483 1.0e-14 84.0 159 37.1
Gohir.D09G131700 Gossypium hirsutum HOM05D007532 ORTHO05D009483 1.4e-14 83.6 151 41.7
PGR004G2296 Punica granatum HOM05D007532 ORTHO05D009483 1.8e-14 83.2 152 38.8
Rhsim03G0066200 Rhododendron simsii HOM05D007532 ORTHO05D009483 6.8e-14 81.3 128 46.1
Thecc.05G102000 Theobroma cacao HOM05D007532 ORTHO05D009483 2.6e-13 79.3 161 39.1
Aqoxy1G00693 Aquilegia oxysepala HOM05D007532 ORTHO05D009483 3.4e-13 79.0 124 38.7
COL.COLO4_29593 Corchorus olitorius HOM05D007532 ORTHO05D009483 5.7e-13 78.2 144 39.6
Duzib093G1477 Durio zibethinus HOM05D007532 ORTHO05D009483 9.8e-13 77.4 151 39.1
Atru.chr8.1383 Acer truncatum HOM05D007532 ORTHO05D009483 1.7e-12 76.6 133 39.1
Gohir.D04G094900 Gossypium hirsutum HOM05D007532 ORTHO05D009483 2.2e-12 76.3 138 39.9
Gorai.009G397600 Gossypium raimondii HOM05D007532 ORTHO05D009483 2.2e-12 76.3 138 39.9
ECA238G0408 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.8e-12 75.9 124 41.9
Sc20g0006700 Simmondsia chinensis HOM05D007532 ORTHO05D009483 3.7e-12 75.5 126 38.9
Cpa.g.sc104.49 Carica papaya HOM05D007532 ORTHO05D009483 4.9e-12 75.1 154 35.7
Potri.016G071700 Populus trichocarpa HOM05D007532 ORTHO05D009483 6.3e-12 74.7 151 41.7
CANSAT64G0088 Cannabis sativa HOM05D007532 ORTHO05D009483 8.3e-12 74.3 139 36.7
TWI77G0050 Tripterygium wilfordii HOM05D007532 ORTHO05D009483 1.8e-11 73.2 113 45.1
Sabra06G0157400 Salix brachista HOM05D007532 ORTHO05D009483 2.4e-11 72.8 166 38.0
Potri.006G204400 Populus trichocarpa HOM05D007532 ORTHO05D009483 3.1e-11 72.4 158 39.2
RcHm_v2.0_Chr3g0475571 Rosa chinensis HOM05D007532 ORTHO05D009483 3.1e-11 72.4 141 36.2
Duzib128G1100 Durio zibethinus HOM05D007532 ORTHO05D009483 7.0e-11 71.2 148 37.8
Lalb_Chr02g0154541 Lupinus albus HOM05D007532 ORTHO05D009483 1.2e-10 70.5 119 40.3
SGA_v2.0_scaffold35G14004 Striga asiatica HOM05D007532 ORTHO05D009483 1.2e-10 70.5 141 40.4
Migut.L01834 Erythranthe guttata HOM05D007532 ORTHO05D009483 1.6e-10 70.1 150 35.3
MBI17_g22147_MAGBIO Magnolia biondii HOM05D007532 ORTHO05D009483 1.6e-10 70.1 142 34.5
Lj5g0000288 Lotus japonicus HOM05D007532 ORTHO05D009483 5.9e-10 68.2 126 38.9
Ciclev10012763m.g Citrus clementina HOM05D007532 ORTHO05D009483 1.0e-09 67.4 130 34.6
FvH4_6g20110 Fragaria vesca HOM05D007532 ORTHO05D009483 2.9e-09 65.9 139 34.5
FAN14G5580 Fragaria x ananassa HOM05D007532 ORTHO05D009483 2.9e-09 65.9 139 34.5
Phvul.007G269000 Phaseolus vulgaris HOM05D007532 ORTHO05D009483 2.9e-09 65.9 119 36.1
Gohir.A04G060800 Gossypium hirsutum HOM05D007532 ORTHO05D009483 3.8e-09 65.5 138 37.0
ClCG10G018450 Citrullus lanatus HOM05D007532 ORTHO05D009483 8.6e-09 64.3 118 35.6
Medtr1g057220 Medicago truncatula HOM05D007532 ORTHO05D009483 8.6e-09 64.3 139 36.0
PSO384G2238 Papaver somniferum HOM05D007532 ORTHO05D009483 1.1e-08 63.9 155 35.5
arahy.Tifrunner.gnm1.ann1.R0B094 Arachis hypogaea HOM05D007532 ORTHO05D009483 2.5e-08 62.8 141 36.9
arahy.Tifrunner.gnm1.ann1.U8RNVP Arachis hypogaea HOM05D007532 ORTHO05D009483 2.5e-08 62.8 141 36.9
MELO3C009524.2 Cucumis melo HOM05D007532 ORTHO05D009483 3.3e-08 62.4 124 33.1
DCAR_016921 Daucus carota HOM05D007532 ORTHO05D009483 3.3e-08 62.4 125 40.8
Manes.08G032400 Manihot esculenta HOM05D007532 ORTHO05D009483 3.3e-08 62.4 141 34.0
BNapus_Darmor_BZH_scaffold_145p00030 Brassica napus HOM05D014261 ORTHO05D016579 4.3e-08 62.0 128 35.9
PSO339G0695 Papaver somniferum HOM05D007532 ORTHO05D009483 4.3e-08 62.0 171 32.7
BolC1t05302H Brassica oleracea HOM05D014261 ORTHO05D016579 5.6e-08 61.6 127 36.2
FAN05G0427 Fragaria x ananassa HOM05D007532 ORTHO05D009483 5.6e-08 61.6 126 34.9
AUR62037048 Chenopodium quinoa HOM05D007532 ORTHO05D009483 1.2e-07 60.5 128 38.3
Ca_11714_v3 Cicer arietinum L. HOM05D007532 ORTHO05D009483 1.2e-07 60.5 128 34.4
Cc02_g08010 Coffea canephora HOM05D002150 ORTHO05D002191 1.2e-07 60.5 85 41.2
TPR.G31864 Trifolium pratense HOM05D007532 ORTHO05D009483 1.6e-07 60.1 138 34.8
THA.LOC104826804 Tarenaya hassleriana HOM05D014261 ORTHO05D016579 2.1e-07 59.7 117 36.8
Duzib106G1076 Durio zibethinus HOM05D007532 ORTHO05D009483 2.8e-07 59.3 143 35.7
Carub.0003s1096 Capsella rubella HOM05D014261 ORTHO05D016579 4.7e-07 58.5 128 33.6
BraA01t04171Z Brassica rapa HOM05D014261 ORTHO05D016579 8.0e-07 57.8 129 34.9
Sp3g09870 Schrenkiella parvula HOM05D014261 ORTHO05D016579 1.0e-06 57.4 132 33.3
HPP92_006360 Vanilla planifolia HOM05D007532 ORTHO05D009483 1.0e-06 57.4 114 34.2
DCAR_027636 Daucus carota HOM05D002150 ORTHO05D002191 1.4e-06 57.0 80 41.2
AUR62006278 Chenopodium quinoa HOM05D007532 ORTHO05D009483 1.8e-06 56.6 129 37.2
Lsat_1_v5_gn_2_119741 Lactuca sativa HOM05D002150 ORTHO05D002191 1.8e-06 56.6 131 32.8
PSO648G0075 Papaver somniferum HOM05D002150 ORTHO05D002191 1.8e-06 56.6 118 36.4
Sabra16G0072100 Salix brachista HOM05D007532 ORTHO05D009483 1.8e-06 56.6 156 35.3
Nn2g14270 Nelumbo nucifera HOM05D007532 ORTHO05D009483 2.3e-06 56.2 101 40.6
Eucgr.A02598 Eucalyptus grandis HOM05D007532 ORTHO05D009483 4.0e-06 55.5 111 37.8
Os11g0703600 Oryza sativa ssp. japonica HOM05D002150 ORTHO05D002191 5.2e-06 55.1 116 35.3
Rhsim09G0165300 Rhododendron simsii HOM05D002150 ORTHO05D002191 5.2e-06 55.1 77 41.6
Nn5g26936 Nelumbo nucifera HOM05D002150 ORTHO05D002191 6.8e-06 54.7 75 44.0
COL.COLO4_18490 Corchorus olitorius HOM05D002150 ORTHO05D002191 8.9e-06 54.3 141 33.3
QL08p059179 Quercus lobata HOM05D002150 ORTHO05D002191 8.9e-06 54.3 84 42.9


User provided reference genes

Program Settings