Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1C1032G6 Lonicera japonica HOM05D002799 ORTHO05D007076 7.6e-247 856.7 420 100.0
Lj2A621G40 Lonicera japonica HOM05D002799 ORTHO05D007076 4.1e-168 595.1 373 79.6
Dinv17267 Davidia involucrata HOM05D002799 ORTHO05D007076 1.5e-154 550.1 435 66.2
CSS0010295 Camellia sinensis var. sinensis HOM05D002799 ORTHO05D007076 3.3e-149 532.3 437 64.3
Actinidia08737 Actinidia chinensis HOM05D002799 ORTHO05D007076 1.3e-142 510.4 435 61.8
GSVIVG01024449001 Vitis vinifera HOM05D002799 ORTHO05D007076 3.2e-136 489.2 354 68.9
CiPaw.05G237100 Carya illinoinensis HOM05D002799 ORTHO05D007076 2.3e-134 483.0 364 66.8
TAR374G0973 Trochodendron aralioides HOM05D002799 ORTHO05D007076 2.8e-132 476.1 435 58.2
Nn1g02009 Nelumbo nucifera HOM05D002799 ORTHO05D007076 8.1e-132 474.6 435 58.4
QL09p025824 Quercus lobata HOM05D002799 ORTHO05D007076 8.1e-132 474.6 434 58.8
Ciclev10001355m.g Citrus clementina HOM05D002799 ORTHO05D007076 1.7e-129 466.8 326 72.1
Thecc.08G172500 Theobroma cacao HOM05D002799 ORTHO05D007076 3.2e-128 462.6 433 56.6
COL.COLO4_24619 Corchorus olitorius HOM05D002799 ORTHO05D007076 1.6e-127 460.3 429 57.1
Duzib211G0014 Durio zibethinus HOM05D002799 ORTHO05D007076 1.8e-126 456.8 346 67.9
Atru.chr12.2008 Acer truncatum HOM05D002799 ORTHO05D007076 5.1e-126 455.3 321 72.9
Prupe.2G323900 Prunus persica HOM05D002799 ORTHO05D007076 7.4e-125 451.4 338 68.9
Gorai.006G053300 Gossypium raimondii HOM05D002799 ORTHO05D007076 9.6e-125 451.1 438 55.9
MBI04_g21139_MAGBIO Magnolia biondii HOM05D002799 ORTHO05D007076 1.3e-124 450.7 421 56.1
Gohir.D09G053900 Gossypium hirsutum HOM05D002799 ORTHO05D007076 1.1e-123 447.6 437 55.6
Manes.08G164400 Manihot esculenta HOM05D002799 ORTHO05D007076 2.4e-123 446.4 368 62.5
Gohir.A09G055000 Gossypium hirsutum HOM05D002799 ORTHO05D007076 4.0e-123 445.7 438 55.3
CAN.G289.47 Capsicum annuum HOM05D002799 ORTHO05D007076 4.5e-122 442.2 435 56.6
MD01G1233700 Malus domestica HOM05D002799 ORTHO05D007076 1.0e-121 441.0 343 65.9
vmacro06500 Vaccinium macrocarpon HOM05D002799 ORTHO05D007076 1.1e-120 437.6 331 67.7
CsaV3_4G004510 Cucumis sativus L. HOM05D002799 ORTHO05D007076 7.1e-120 434.9 334 66.8
Cc03_g15080 Coffea canephora HOM05D002799 ORTHO05D007076 7.9e-119 431.4 428 56.1
MSTRG.11401 Avicennia marina HOM05D002799 ORTHO05D007076 3.0e-118 429.5 354 64.1
Eucgr.K00095 Eucalyptus grandis HOM05D002799 ORTHO05D007076 3.0e-118 429.5 330 66.7
PGSC0003DMG400012810 Solanum tuberosum HOM05D002799 ORTHO05D007076 5.1e-118 428.7 358 62.3
Sopen03g002460 Solanum pennellii HOM05D002799 ORTHO05D007076 6.7e-118 428.3 349 62.8
Potri.015G079500 Populus trichocarpa HOM05D002799 ORTHO05D007076 1.1e-117 427.6 321 67.0
MELO3C017614.2 Cucumis melo HOM05D002799 ORTHO05D007076 3.3e-117 426.0 349 63.0
Oeu014983.2 Olea europaea HOM05D002799 ORTHO05D007076 4.3e-117 425.6 374 60.4
Solyc03g006460.4 Solanum lycopersicum HOM05D002799 ORTHO05D007076 4.3e-117 425.6 349 62.5
Lj3g0008833 Lotus japonicus HOM05D002799 ORTHO05D007076 5.7e-117 425.2 320 68.4
Thhalv10002559m.g Eutrema salsugineum HOM05D002799 ORTHO05D007076 7.4e-117 424.9 380 59.5
Medtr4g077510 Medicago truncatula HOM05D002799 ORTHO05D007076 1.1e-115 421.0 323 66.9
DCAR_009002 Daucus carota HOM05D002799 ORTHO05D007076 1.4e-115 420.6 428 55.4
SalBow5G5430 Salvia bowleyana HOM05D002799 ORTHO05D007076 1.8e-115 420.2 356 63.5
CARHR102970 Cardamine hirsuta HOM05D002799 ORTHO05D007076 1.5e-114 417.2 334 62.9
Glyma.12G019100 Glycine max HOM05D002799 ORTHO05D007076 2.0e-114 416.8 310 68.4
Phvul.011G021500 Phaseolus vulgaris HOM05D002799 ORTHO05D007076 4.5e-114 415.6 314 67.5
Lalb_Chr03g0024441 Lupinus albus HOM05D002799 ORTHO05D007076 2.2e-113 413.3 320 65.6
ATR0829G228 Amborella trichopoda HOM05D002799 ORTHO05D007076 3.8e-113 412.5 312 64.4
TWI34G0554 Tripterygium wilfordii HOM05D002799 ORTHO05D007076 3.8e-113 412.5 324 65.4
PGR004G1694 Punica granatum HOM05D002799 ORTHO05D007076 5.0e-113 412.1 353 61.2
FAN03G1078 Fragaria x ananassa HOM05D002799 ORTHO05D007076 6.5e-113 411.8 311 64.0
Sed0006194 Sechium edule HOM05D002799 ORTHO05D007076 8.5e-113 411.4 313 66.8
AL3G42700 Arabidopsis lyrata HOM05D002799 ORTHO05D007076 1.9e-112 410.2 335 62.1
Ca_04931_v3 Cicer arietinum L. HOM05D002799 ORTHO05D007076 1.9e-112 410.2 314 66.9
Ca_29855_v3 Cicer arietinum L. HOM05D002799 ORTHO05D007076 1.9e-112 410.2 314 66.9
FAN10G3482 Fragaria x ananassa HOM05D002799 ORTHO05D007076 4.2e-112 409.1 323 61.9
Carub.0003s2662 Capsella rubella HOM05D002799 ORTHO05D007076 5.5e-112 408.7 330 63.0
FvH4_7g33590 Fragaria vesca HOM05D002799 ORTHO05D007076 7.2e-112 408.3 320 62.8
FAN10G0267 Fragaria x ananassa HOM05D002799 ORTHO05D007076 1.2e-111 407.5 323 61.3
AT2G04940 Arabidopsis thaliana HOM05D002799 ORTHO05D007076 4.6e-111 405.6 308 64.6
FAN01G1859 Fragaria x ananassa HOM05D002799 ORTHO05D007076 4.6e-111 405.6 323 61.3
arahy.Tifrunner.gnm1.ann1.IZ2599 Arachis hypogaea HOM05D002799 ORTHO05D007076 1.3e-110 404.1 312 65.1
arahy.Tifrunner.gnm1.ann1.ZMX436 Arachis hypogaea HOM05D002799 ORTHO05D007076 1.3e-110 404.1 312 65.1
CANSAT21G1863 Cannabis sativa HOM05D002799 ORTHO05D007076 1.3e-110 404.1 336 62.2
VMungo1127G2112 Vigna mungo HOM05D002799 ORTHO05D007076 2.3e-110 403.3 314 66.6
EL10Ac3g05098 Beta vulgaris HOM05D002799 ORTHO05D007076 6.7e-110 401.7 330 62.4
THA.LOC104815357 Tarenaya hassleriana HOM05D002799 ORTHO05D007076 8.8e-110 401.4 343 61.2
MD07G1305800 Malus domestica HOM05D002799 ORTHO05D007076 1.9e-109 400.2 343 60.9
Sp3g23560 Schrenkiella parvula HOM05D002799 ORTHO05D007076 5.7e-109 398.7 336 60.7
A03p44540 Brassica napus HOM05D002799 ORTHO05D007076 1.7e-108 397.1 341 61.9
BraA03t13587Z Brassica rapa HOM05D002799 ORTHO05D007076 1.7e-108 397.1 341 61.9
PSO782G0547 Papaver somniferum HOM05D002799 ORTHO05D007076 3.7e-108 396.0 327 63.6
AUR62028151 Chenopodium quinoa HOM05D002799 ORTHO05D007076 4.8e-108 395.6 318 62.3
Migut.I00118 Erythranthe guttata HOM05D002799 ORTHO05D007076 4.8e-108 395.6 329 63.2
RcHm_v2.0_Chr1g0383851 Rosa chinensis HOM05D002799 ORTHO05D007076 4.8e-108 395.6 261 72.4
BcaB08g34494 Brassica carinata HOM05D002799 ORTHO05D007076 6.3e-108 395.2 325 63.4
BcaC01g03181 Brassica carinata HOM05D002799 ORTHO05D007076 2.4e-107 393.3 342 60.8
C03p55340 Brassica napus HOM05D002799 ORTHO05D007076 2.4e-107 393.3 341 60.1
BolC3t17806H Brassica oleracea HOM05D002799 ORTHO05D007076 2.4e-107 393.3 342 60.8
Hma1.2p1_0758F.1_g213600 Hydrangea macrophylla HOM05D002799 ORTHO05D007076 1.5e-106 390.6 245 77.6
Ah.13g072670 Amaranthus hybridus HOM05D002799 ORTHO05D007076 2.6e-106 389.8 334 61.1
PSO063G7569 Papaver somniferum HOM05D002799 ORTHO05D007076 3.4e-106 389.4 323 63.5
Aqoxy3G02040 Aquilegia oxysepala HOM05D002799 ORTHO05D007076 4.5e-106 389.0 321 62.3
ClCG07G017310 Citrullus lanatus HOM05D002799 ORTHO05D007076 5.9e-106 388.7 336 62.5
Aa31LG3G2760 Aethionema arabicum HOM05D002799 ORTHO05D007076 5.0e-105 385.6 308 63.6
CDE01G0680 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 1.4e-102 377.5 322 61.2
ECA233G3743 Erigeron canadensis HOM05D002799 ORTHO05D007076 3.3e-101 372.9 320 60.3
HanXRQChr04g0105251 Helianthus annuus HOM05D002799 ORTHO05D007076 3.3e-101 372.9 336 59.2
HPP92_015127 Vanilla planifolia HOM05D002799 ORTHO05D007076 2.8e-100 369.8 312 58.7
Lsat_1_v5_gn_8_3761 Lactuca sativa HOM05D002799 ORTHO05D007076 3.7e-100 369.4 356 56.5
AUR62005914 Chenopodium quinoa HOM05D002799 ORTHO05D007076 1.8e-94 350.5 369 52.8
Hund09770 Selenicereus undatus HOM05D002799 ORTHO05D007076 1.1e-93 347.8 343 55.1
Cfa015896 Carpinus fangiana HOM05D002799 ORTHO05D007076 2.2e-92 343.6 366 55.2
Psat7g171360 Pisum sativum HOM05D002799 ORTHO05D007076 1.2e-90 337.8 322 57.8
unitig_62.g23564 Utricularia gibba HOM05D002799 ORTHO05D007076 4.7e-87 325.9 317 56.8
Cpa.g.sc67.53 Carica papaya HOM05D002799 ORTHO05D007076 5.2e-86 322.4 180 80.6
Zm00001eb430250 Zea mays HOM05D002799 ORTHO05D007076 8.8e-86 321.6 259 61.4
Os02g0238500 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D007076 1.2e-85 321.2 231 66.7
Solyc03g006452.1 Solanum lycopersicum HOM05D002799 ORTHO05D007076 9.7e-85 318.2 293 59.4
Os04g0599400 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D007076 1.2e-82 311.2 295 55.3
Sc13g0010800 Simmondsia chinensis HOM05D002799 ORTHO05D007076 2.2e-81 307.0 280 57.5
Actinidia34299 Actinidia chinensis HOM05D002799 ORTHO05D007076 7.2e-80 302.0 179 80.4
AagrBONN_evm.TU.Sc2ySwM_368.1885 Anthoceros agrestis HOM05D002799 ORTHO05D007076 8.0e-79 298.5 345 48.4
Pp3c3_18900 Physcomitrium patens HOM05D002799 ORTHO05D007076 1.2e-74 284.6 273 53.5
Pp3c5_23880 Physcomitrium patens HOM05D002799 ORTHO05D007076 1.7e-73 280.8 278 52.2
Lj3A801T16 Lonicera japonica HOM05D002799 ORTHO05D007076 5.4e-67 259.2 235 56.2
Mapoly0041s0072 Marchantia polymorpha HOM05D002799 ORTHO05D007076 3.5e-66 256.5 258 51.6
CBR_g26239 Chara braunii HOM05D002799 ORTHO05D007076 1.2e-63 248.1 345 41.2
SMO196G0267 Selaginella moellendorffii HOM05D002799 ORTHO05D007076 2.0e-61 240.7 180 60.0
FvH4_7g33592 Fragaria vesca HOM05D002799 ORTHO05D007076 1.6e-58 231.1 124 81.5
Zm00001eb071960 Zea mays HOM05D002799 ORTHO05D007076 3.1e-54 216.9 118 77.1
Sabra15G0103700 Salix brachista HOM05D002799 ORTHO05D007076 2.1e-50 204.1 305 42.0
Haze_00592 Corylus avellana HOM05D002799 ORTHO05D007076 1.9e-48 197.6 310 41.9
Sabra15G0103800 Salix brachista HOM05D002799 ORTHO05D007076 1.8e-46 191.0 103 87.4
Hma1.2p1_0758F.1_g213590 Hydrangea macrophylla HOM05D002799 ORTHO05D007076 5.4e-43 179.5 221 51.6
Peaxi162Scf00195g01110 Petunia axillaris HOM05D002799 ORTHO05D007076 7.8e-42 175.6 102 81.4
FvH4_7g33593 Fragaria vesca HOM05D002799 ORTHO05D007076 3.3e-40 170.2 193 49.2
Nitab4.5_0000701g0050 Nicotiana tabacum HOM05D002799 ORTHO05D007076 1.7e-36 157.9 197 46.7
Nitab4.5_0000701g0060 Nicotiana tabacum HOM05D002799 ORTHO05D007076 2.1e-34 151.0 176 51.1
PRCOL_00006278 Prasinoderma coloniale HOM05D002799 ORTHO05D007076 3.9e-33 146.7 259 38.6
Nitab4.5_0000793g0020 Nicotiana tabacum HOM05D002799 ORTHO05D007076 1.5e-32 144.8 152 51.3
Cre06.g267850 Chlamydomonas reinhardtii HOM05D002799 ORTHO05D007076 4.0e-30 136.7 195 40.5
Nitab4.5_0000793g0030 Nicotiana tabacum HOM05D002799 ORTHO05D007076 9.0e-30 135.6 163 50.3
SEGI_10035 Sequoiadendron giganteum HOM05D002799 ORTHO05D007076 3.4e-29 133.7 81 72.8
TPR.G19958 Trifolium pratense HOM05D002799 ORTHO05D007076 1.9e-27 127.9 62 87.1
Lj2C621T3 Lonicera japonica HOM05D002799 ORTHO05D007076 1.5e-24 118.2 67 91.0
HanXRQChr15g0477781 Helianthus annuus HOM05D002799 ORTHO05D007076 3.3e-24 117.1 98 61.2
Haze_00593 Corylus avellana HOM05D002799 ORTHO05D007076 2.6e-21 107.5 61 86.9
TPR.G21490 Trifolium pratense HOM05D002799 ORTHO05D007076 2.9e-20 104.0 63 76.2
Zm00001eb315690 Zea mays HOM05D002799 ORTHO05D007076 1.9e-19 101.3 55 72.7
Actinidia04566 Actinidia chinensis HOM05D002799 ORTHO05D007076 2.4e-19 100.9 203 39.9
Cfa023729 Carpinus fangiana HOM05D002799 ORTHO05D007076 2.4e-19 100.9 294 26.9
QL03p008982 Quercus lobata HOM05D000009 ORTHO05D000008 1.2e-18 98.6 179 40.8
SEGI_38885 Sequoiadendron giganteum HOM05D002799 ORTHO05D007076 1.2e-18 98.6 78 62.8
FAN10G3554 Fragaria x ananassa HOM05D012649 ORTHO05D007076 2.8e-15 87.4 118 43.2
Cpa.g.sc67.52 Carica papaya HOM05D002799 ORTHO05D007076 2.0e-13 81.3 133 36.8
QL03p009165 Quercus lobata HOM05D000009 ORTHO05D000008 1.3e-12 78.6 56 71.4
VMungo1127G1706 Vigna mungo HOM05D002799 ORTHO05D007076 1.7e-12 78.2 184 33.7
SalBow8G2774 Salvia bowleyana HOM05D002799 ORTHO05D007076 2.3e-09 67.8 48 70.8


User provided reference genes

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