Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1C1026T8 Lonicera japonica HOM05D003640 ORTHO05D004439 0.0e+00 1471.4 813 100.0
Dinv29226 Davidia involucrata HOM05D003640 ORTHO05D004439 6.0e-248 861.3 907 57.7
CSS0041088 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 5.4e-241 838.2 859 58.7
Actinidia34257 Actinidia chinensis HOM05D003640 ORTHO05D004439 1.5e-227 793.5 878 55.5
GSVIVG01038625001 Vitis vinifera HOM05D003640 ORTHO05D004439 3.0e-223 779.2 800 59.0
Rhsim03G0214000 Rhododendron simsii HOM05D003640 ORTHO05D004439 6.7e-223 778.1 866 56.0
QL09p007408 Quercus lobata HOM05D003640 ORTHO05D004439 7.4e-222 774.6 873 55.4
QL93p0214_0013 Quercus lobata HOM05D003640 ORTHO05D004439 2.4e-220 769.6 873 55.3
Actinidia28276 Actinidia chinensis HOM05D003640 ORTHO05D004439 2.0e-219 766.5 876 54.7
Actinidia08687 Actinidia chinensis HOM05D003640 ORTHO05D004439 5.5e-217 758.4 801 57.7
vmacro06427 Vaccinium macrocarpon HOM05D003640 ORTHO05D004439 5.5e-217 758.4 915 52.6
Cc02_g00960 Coffea canephora HOM05D003640 ORTHO05D004439 1.9e-214 750.0 874 54.9
Prupe.2G317300 Prunus persica HOM05D003640 ORTHO05D004439 7.4e-214 748.0 861 53.0
Atru.chr12.2367 Acer truncatum HOM05D003640 ORTHO05D004439 2.9e-210 736.1 855 53.5
Hma1.2p1_0094F.1_g047240 Hydrangea macrophylla HOM05D003640 ORTHO05D004439 8.4e-210 734.6 872 53.2
TAR375G0550 Trochodendron aralioides HOM05D003640 ORTHO05D004439 2.1e-208 729.9 854 53.0
Thecc.03G206700 Theobroma cacao HOM05D003640 ORTHO05D004439 3.9e-207 725.7 870 54.4
Dinv35374 Davidia involucrata HOM05D003640 ORTHO05D004439 1.1e-206 724.2 764 58.0
Haze_00277 Corylus avellana HOM05D003640 ORTHO05D004439 1.6e-205 720.3 890 52.1
Manes.01G041300 Manihot esculenta HOM05D003640 ORTHO05D004439 3.4e-203 712.6 844 54.0
MD01G1227300 Malus domestica HOM05D003640 ORTHO05D004439 2.5e-201 706.4 863 52.1
Oeu037965.1 Olea europaea HOM05D003640 ORTHO05D004439 3.9e-199 699.1 872 51.7
Nn3g18833 Nelumbo nucifera HOM05D003640 ORTHO05D004439 4.8e-197 692.2 819 51.5
MD07G1297600 Malus domestica HOM05D003640 ORTHO05D004439 6.9e-196 688.3 864 52.5
Nn1g00405 Nelumbo nucifera HOM05D003640 ORTHO05D004439 1.5e-195 687.2 886 49.3
Potri.012G023200 Populus trichocarpa HOM05D003640 ORTHO05D004439 6.5e-194 681.8 851 50.3
FAN01G0295 Fragaria x ananassa HOM05D003640 ORTHO05D004439 9.4e-193 677.9 849 51.6
TAR629G0154 Trochodendron aralioides HOM05D003640 ORTHO05D004439 9.4e-193 677.9 873 49.0
Solyc03g082490.4 Solanum lycopersicum HOM05D003640 ORTHO05D004439 1.6e-192 677.2 864 50.3
Duzib084G0116 Durio zibethinus HOM05D003640 ORTHO05D004439 1.0e-191 674.5 869 51.3
Potri.015G006700 Populus trichocarpa HOM05D003640 ORTHO05D004439 1.0e-191 674.5 852 50.2
CiPaw.06G042300 Carya illinoinensis HOM05D003640 ORTHO05D004439 1.1e-190 671.0 882 49.8
RcHm_v2.0_Chr1g0382521 Rosa chinensis HOM05D003640 ORTHO05D004439 4.4e-190 669.1 855 50.5
Nitab4.5_0001993g0040 Nicotiana tabacum HOM05D003640 ORTHO05D004439 5.7e-190 668.7 836 50.7
TAR636G3562 Trochodendron aralioides HOM05D003640 ORTHO05D004439 7.0e-188 661.8 885 49.4
Gorai.004G124100 Gossypium raimondii HOM05D003640 ORTHO05D004439 2.0e-187 660.2 870 49.7
FAN10G0822 Fragaria x ananassa HOM05D003640 ORTHO05D004439 3.5e-187 659.4 852 50.6
arahy.Tifrunner.gnm1.ann1.1EDB5Y Arachis hypogaea HOM05D003640 ORTHO05D004439 8.5e-186 654.8 837 50.1
Oeu055180.3 Olea europaea HOM05D003640 ORTHO05D004439 2.5e-185 653.3 909 49.5
arahy.Tifrunner.gnm1.ann1.BT3HV7 Arachis hypogaea HOM05D003640 ORTHO05D004439 3.2e-185 652.9 837 50.1
FAN10G2795 Fragaria x ananassa HOM05D003640 ORTHO05D004439 7.2e-185 651.7 852 50.5
Duzib068G1167 Durio zibethinus HOM05D003640 ORTHO05D004439 6.1e-184 648.7 860 49.3
Glyma.06G134300 Glycine max HOM05D003640 ORTHO05D004439 6.1e-184 648.7 829 48.9
FAN03G1455 Fragaria x ananassa HOM05D003640 ORTHO05D004439 5.2e-183 645.6 842 50.8
Gohir.D08G115200 Gossypium hirsutum HOM05D003640 ORTHO05D004439 6.7e-183 645.2 870 49.1
Sabra15G0004700 Salix brachista HOM05D003640 ORTHO05D004439 6.7e-183 645.2 856 48.8
Sabra12G0010700 Salix brachista HOM05D003640 ORTHO05D004439 2.0e-182 643.7 923 46.5
TWI39G1295 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 5.7e-182 642.1 870 49.8
VMungo1309G3003 Vigna mungo HOM05D003640 ORTHO05D004439 1.7e-181 640.6 869 47.4
CANSAT21G0645 Cannabis sativa HOM05D003640 ORTHO05D004439 2.2e-181 640.2 836 49.4
Duzib205G1657 Durio zibethinus HOM05D003640 ORTHO05D004439 2.8e-181 639.8 863 49.7
Lalb_Chr08g0239801 Lupinus albus HOM05D003640 ORTHO05D004439 2.8e-181 639.8 876 48.1
CSS0045837 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 1.4e-180 637.5 749 53.8
ClCG01G000140 Citrullus lanatus HOM05D003640 ORTHO05D004439 1.4e-180 637.5 875 47.5
Glyma.04G230800 Glycine max HOM05D003640 ORTHO05D004439 7.0e-180 635.2 865 49.2
Gohir.A08G103800 Gossypium hirsutum HOM05D003640 ORTHO05D004439 7.0e-180 635.2 871 48.5
Ca_16756_v3 Cicer arietinum L. HOM05D003640 ORTHO05D004439 2.0e-179 633.6 834 48.7
MBI12_g23004_MAGBIO Magnolia biondii HOM05D003640 ORTHO05D004439 1.9e-177 627.1 897 46.7
MELO3C005925.2 Cucumis melo HOM05D003640 ORTHO05D004439 3.0e-175 619.8 872 46.8
Lj1g0027227 Lotus japonicus HOM05D003640 ORTHO05D004439 3.0e-175 619.8 869 47.1
EL10Ac3g05201 Beta vulgaris HOM05D003640 ORTHO05D004439 8.8e-175 618.2 862 49.4
AUR62035604 Chenopodium quinoa HOM05D003640 ORTHO05D004439 4.4e-174 615.9 833 49.0
FvH4_7g32660 Fragaria vesca HOM05D003640 ORTHO05D004439 7.5e-174 615.1 781 51.1
Sed0000635 Sechium edule HOM05D003640 ORTHO05D004439 7.5e-174 615.1 867 46.3
Lalb_Chr11g0067271 Lupinus albus HOM05D003640 ORTHO05D004439 9.7e-174 614.8 875 47.0
CsaV3_5G000020 Cucumis sativus L. HOM05D003640 ORTHO05D004439 1.7e-173 614.0 872 46.4
Oeu061023.1 Olea europaea HOM05D003640 ORTHO05D004439 1.7e-173 614.0 777 50.6
MSTRG.8618 Avicennia marina HOM05D003640 ORTHO05D004439 8.3e-173 611.7 877 49.0
Phvul.009G050200 Phaseolus vulgaris HOM05D003640 ORTHO05D004439 1.4e-172 610.9 874 47.4
AUR62006022 Chenopodium quinoa HOM05D003640 ORTHO05D004439 2.4e-172 610.1 834 48.8
Migut.F00997 Erythranthe guttata HOM05D003640 ORTHO05D004439 2.0e-171 607.1 849 49.8
Medtr3g092250 Medicago truncatula HOM05D003640 ORTHO05D004439 3.5e-171 606.3 851 47.6
Hund09700 Selenicereus undatus HOM05D003640 ORTHO05D004439 5.9e-171 605.5 836 47.1
DCAR_020359 Daucus carota HOM05D003640 ORTHO05D004439 7.7e-171 605.1 843 48.2
Gorai.008G265800 Gossypium raimondii HOM05D003640 ORTHO05D004439 5.0e-170 602.4 861 48.2
Sed0021595 Sechium edule HOM05D003640 ORTHO05D004439 5.5e-169 599.0 860 46.2
Ah.07g204850 Amaranthus hybridus HOM05D003640 ORTHO05D004439 1.6e-168 597.4 862 48.4
Gohir.A12G247000 Gossypium hirsutum HOM05D003640 ORTHO05D004439 8.0e-168 595.1 860 47.9
Gohir.D12G247700 Gossypium hirsutum HOM05D003640 ORTHO05D004439 8.0e-168 595.1 861 47.7
MSTRG.26989 Avicennia marina HOM05D003640 ORTHO05D004439 1.4e-167 594.3 857 49.9
Psat0s2807g0080 Pisum sativum HOM05D003640 ORTHO05D004439 3.7e-165 586.3 846 47.4
Lalb_Chr23g0271841 Lupinus albus HOM05D003640 ORTHO05D004439 2.4e-164 583.6 781 50.2
CiPaw.05G202900 Carya illinoinensis HOM05D003640 ORTHO05D004439 1.7e-162 577.4 765 49.5
SalBow6G0961 Salvia bowleyana HOM05D003640 ORTHO05D004439 1.6e-160 570.9 851 47.2
PGR142G2086 Punica granatum HOM05D003640 ORTHO05D004439 2.8e-157 560.1 834 46.0
SGA_v2.0_scaffold565G52945 Striga asiatica HOM05D003640 ORTHO05D004439 1.1e-156 558.1 823 47.1
Gohir.D09G181300 Gossypium hirsutum HOM05D003640 ORTHO05D004439 5.9e-155 552.4 860 44.3
ECA232G0587 Erigeron canadensis HOM05D003640 ORTHO05D004439 2.9e-154 550.1 800 46.9
COL.COLO4_14351 Corchorus olitorius HOM05D003640 ORTHO05D004439 2.5e-153 547.0 828 45.5
Aqoxy7G00014 Aquilegia oxysepala HOM05D003640 ORTHO05D004439 5.6e-153 545.8 874 42.6
Hund21040 Selenicereus undatus HOM05D003640 ORTHO05D004439 1.6e-152 544.3 830 44.7
SalBow2G2490 Salvia bowleyana HOM05D003640 ORTHO05D004439 2.2e-149 533.9 847 45.8
Sopen03g022220 Solanum pennellii HOM05D003640 ORTHO05D004439 4.1e-148 529.6 705 49.1
Gorai.006G203300 Gossypium raimondii HOM05D003640 ORTHO05D004439 7.0e-148 528.9 860 44.1
MSTRG.8540 Avicennia marina HOM05D003640 ORTHO05D004439 2.1e-144 517.3 843 45.8
Gohir.A09G186400 Gossypium hirsutum HOM05D003640 ORTHO05D004439 2.8e-144 516.9 833 43.2
DCAR_008967 Daucus carota HOM05D003640 ORTHO05D004439 2.3e-143 513.8 845 45.1
CAN.G358.147 Capsicum annuum HOM05D003640 ORTHO05D004439 6.8e-143 512.3 621 51.2
SGA_v2.0_scaffold136G35055 Striga asiatica HOM05D003640 ORTHO05D004439 3.7e-141 506.5 795 45.5
HanXRQChr05g0139301 Helianthus annuus HOM05D003640 ORTHO05D004439 2.1e-136 490.7 821 43.8
HanXRQChr15g0485391 Helianthus annuus HOM05D003640 ORTHO05D004439 8.1e-136 488.8 840 42.9
PSO384G0385 Papaver somniferum HOM05D003640 ORTHO05D004439 2.3e-135 487.3 858 40.4
PSO135G0929 Papaver somniferum HOM05D003640 ORTHO05D004439 4.0e-135 486.5 863 40.6
THA.LOC104825162 Tarenaya hassleriana HOM05D003640 ORTHO05D004439 5.2e-135 486.1 817 42.5
TWI23G0563 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 5.8e-126 456.1 659 46.7
unitig_92.g28243 Utricularia gibba HOM05D003640 ORTHO05D004439 1.3e-125 454.9 827 42.3
Lsat_1_v5_gn_9_50221 Lactuca sativa HOM05D003640 ORTHO05D004439 3.5e-123 446.8 805 42.7
Cpa.g.sc3.144 Carica papaya HOM05D003640 ORTHO05D004439 6.0e-123 446.0 794 42.4
Lsat_1_v5_gn_9_50181 Lactuca sativa HOM05D003640 ORTHO05D004439 6.6e-122 442.6 805 42.4
ATR0580G072 Amborella trichopoda HOM05D003640 ORTHO05D004439 1.2e-118 431.8 892 39.0
PSO063G3729 Papaver somniferum HOM05D003640 ORTHO05D004439 4.4e-118 429.9 809 39.9
Sc19g0000670 Simmondsia chinensis HOM05D003640 ORTHO05D004439 1.3e-117 428.3 689 44.3
Aa31sc289G20 Aethionema arabicum HOM05D003640 ORTHO05D004439 3.0e-114 417.2 719 41.4
Os08g0543600 Oryza sativa ssp. japonica HOM05D003640 ORTHO05D004439 5.6e-105 386.3 853 36.6
HPP92_020943 Vanilla planifolia HOM05D003640 ORTHO05D008613 3.2e-100 370.5 853 38.2
Carub.0008s1397 Capsella rubella HOM05D003640 ORTHO05D004439 1.2e-99 368.6 727 40.9
CDE04G2417 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 3.5e-99 367.1 829 35.7
Zm00001eb037420 Zea mays HOM05D003640 ORTHO05D004439 4.6e-99 366.7 834 37.2
Zm00001eb198460 Zea mays HOM05D003640 ORTHO05D004439 1.9e-97 361.3 826 37.9
CARHR266770 Cardamine hirsuta HOM05D003640 ORTHO05D004439 1.3e-96 358.6 730 40.1
Carub.0008s1383 Capsella rubella HOM05D003640 ORTHO05D004439 4.8e-96 356.7 736 40.5
RcHm_v2.0_Chr1g0382561 Rosa chinensis HOM05D003640 ORTHO05D004439 4.8e-96 356.7 497 47.7
CARHR266800 Cardamine hirsuta HOM05D003640 ORTHO05D004439 2.6e-94 350.9 736 40.1
AL8G28460 Arabidopsis lyrata HOM05D003640 ORTHO05D004439 1.8e-90 338.2 726 39.3
Thhalv10012857m.g Eutrema salsugineum HOM05D003640 ORTHO05D004439 3.9e-90 337.0 764 38.7
AT5G53620 Arabidopsis thaliana HOM05D003640 ORTHO05D004439 5.3e-87 326.6 727 38.4
Sp6g15760 Schrenkiella parvula HOM05D003640 ORTHO05D004439 3.4e-78 297.4 686 39.9
BolC3t14166H Brassica oleracea HOM05D003640 ORTHO05D004439 9.4e-76 289.3 673 38.8
C03p17530 Brassica napus HOM05D003640 ORTHO05D004439 2.7e-75 287.7 674 38.9
unitig_37.g11993 Utricularia gibba HOM05D003640 ORTHO05D004439 7.9e-75 286.2 680 40.6
Sp6g15750 Schrenkiella parvula HOM05D003640 ORTHO05D004439 6.7e-74 283.1 690 38.6
BraA03t10798Z Brassica rapa HOM05D003640 ORTHO05D004439 1.7e-72 278.5 670 37.3
A03p15040 Brassica napus HOM05D003640 ORTHO05D004439 2.2e-72 278.1 673 37.9
BcaB01g04251 Brassica carinata HOM05D003640 ORTHO05D004439 1.1e-71 275.8 662 38.8
RcHm_v2.0_Chr1g0382611 Rosa chinensis HOM05D003640 ORTHO05D004439 5.0e-69 266.9 275 58.9
QL09p007399 Quercus lobata HOM05D003640 ORTHO05D004439 4.4e-65 253.8 309 48.9
QL93p0214_0021 Quercus lobata HOM05D003640 ORTHO05D004439 4.4e-65 253.8 309 48.9
BcaB05g22060 Brassica carinata HOM05D003640 ORTHO05D004439 8.5e-61 239.6 650 36.9
BcaB01g04247 Brassica carinata HOM05D003640 ORTHO05D004439 7.0e-55 219.9 575 36.9
SHI02298 Sapria himalayana HOM05D003640 ORTHO05D004439 2.2e-53 214.9 408 38.0
RcHm_v2.0_Chr1g0382631 Rosa chinensis HOM05D003640 ORTHO05D004439 3.4e-49 201.1 366 40.4
arahy.Tifrunner.gnm1.ann1.3V8RAA Arachis hypogaea HOM05D003640 ORTHO05D004439 2.4e-47 194.9 402 36.8
BcaC01g06262 Brassica carinata HOM05D003640 ORTHO05D004439 3.1e-47 194.5 643 33.1
PSO782G5739 Papaver somniferum HOM05D003640 ORTHO05D004439 1.5e-41 175.6 156 58.3
CDE07G0792 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 3.4e-41 174.5 608 30.4
Mapoly0021s0043 Marchantia polymorpha HOM05D003640 ORTHO05D004439 9.8e-41 172.9 988 26.5
Pp3c17_17470 Physcomitrium patens HOM05D003640 ORTHO05D004439 1.4e-39 169.1 757 27.9
Pp3c14_13150 Physcomitrium patens HOM05D003640 ORTHO05D004439 9.2e-39 166.4 913 28.6
HanXRQChr03g0061701 Helianthus annuus HOM05D003640 ORTHO05D004439 1.2e-35 156.0 173 51.4
RcHm_v2.0_Chr1g0382641 Rosa chinensis HOM05D003640 ORTHO05D004439 2.8e-35 154.8 143 64.3
Dinv35373 Davidia involucrata HOM05D003640 ORTHO05D004439 5.2e-34 150.6 95 83.2
A03p14940 Brassica napus HOM05D003640 ORTHO05D004439 6.8e-34 150.2 165 58.8
BraA03t10789Z Brassica rapa HOM05D003640 ORTHO05D004439 6.8e-34 150.2 162 58.0
Dinv06471 Davidia involucrata HOM05D003640 ORTHO05D004439 3.7e-32 144.4 119 66.4
CAN.G1387.1 Capsicum annuum HOM05D003640 ORTHO05D004439 1.5e-28 132.5 205 43.4
SEGI_36158 Sequoiadendron giganteum HOM05D003640 ORTHO05D004439 9.8e-25 119.8 191 44.0
CDE04G2700 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 2.2e-24 118.6 113 55.8
HanXRQChr15g0479781 Helianthus annuus HOM05D003640 ORTHO05D004439 1.9e-23 115.5 127 50.4
HanXRQChr06g0170111 Helianthus annuus HOM05D003640 ORTHO05D004439 3.2e-23 114.8 125 50.4
CAN.G598.13 Capsicum annuum HOM05D003640 ORTHO05D004439 2.1e-22 112.1 196 40.3
Potri.016G069900 Populus trichocarpa HOM05D003640 ORTHO05D034990 2.5e-20 105.1 77 67.5
CAN.G732.35 Capsicum annuum HOM05D003640 ORTHO05D004439 2.1e-19 102.1 186 39.8
COL.COLO4_06022 Corchorus olitorius HOM05D003057 ORTHO05D003904 6.2e-19 100.5 130 53.1
C09p43560 Brassica napus HOM05D003640 ORTHO05D004439 1.6e-14 85.9 86 61.6
BolC9t57239H Brassica oleracea HOM05D003640 ORTHO05D004439 6.0e-14 84.0 86 60.5
COL.COLO4_24960 Corchorus olitorius HOM05D003640 ORTHO05D004439 1.3e-13 82.8 100 56.0
AL8G28750 Arabidopsis lyrata HOM05D003640 ORTHO05D004439 5.6e-12 77.4 200 35.5
C09p43570 Brassica napus HOM05D003640 ORTHO05D004439 1.2e-11 76.3 139 38.1
PSO017G5262 Papaver somniferum HOM05D003640 ORTHO05D004439 1.6e-11 75.9 181 34.3
CAN.G358.52 Capsicum annuum HOM05D003640 ORTHO05D004439 2.1e-11 75.5 95 46.3
PGR042G3558 Punica granatum HOM05D000045 ORTHO05D000611 6.8e-10 70.5 137 38.7
MELO3C010660.2 Cucumis melo HOM05D003640 ORTHO05D004439 2.0e-09 68.9 45 71.1
CAN.G300.4 Capsicum annuum HOM05D000541 ORTHO05D000137 9.9e-09 66.6 85 48.2
ECA232G0388 Erigeron canadensis HOM05D003640 ORTHO05D004439 3.8e-08 64.7 77 42.9
ECA233G3458 Erigeron canadensis HOM05D000153 ORTHO05D002648 3.8e-08 64.7 76 43.4
PSO170G6851 Papaver somniferum HOM05D003640 ORTHO05D004439 1.1e-07 63.2 163 33.1
CAN.G1307.1 Capsicum annuum HOM05D001472 ORTHO05D004439 2.1e-06 58.9 66 51.5


User provided reference genes

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