Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1C1016T12 Lonicera japonica HOM05D005085 ORTHO05D006135 4.4e-52 207.6 100 100.0
Lju170A22T15 Lonicera japonica HOM05D005085 ORTHO05D006135 2.1e-25 119.0 141 52.5
Actinidia08648 Actinidia chinensis HOM05D005085 ORTHO05D006135 2.9e-19 98.6 137 45.3
Actinidia34217 Actinidia chinensis HOM05D005085 ORTHO05D006135 1.9e-18 95.9 137 44.5
CSS0012677 Camellia sinensis var. sinensis HOM05D005085 ORTHO05D006135 3.2e-18 95.1 137 44.5
Rhsim03G0208500 Rhododendron simsii HOM05D005085 ORTHO05D006135 2.1e-17 92.4 137 43.8
vmacro06534 Vaccinium macrocarpon HOM05D005085 ORTHO05D006135 2.1e-17 92.4 137 43.1
Hma1.2p1_0404F.1_g145430 Hydrangea macrophylla HOM05D005085 ORTHO05D006135 4.6e-17 91.3 137 43.1
CSS0032106 Camellia sinensis var. sinensis HOM05D005085 ORTHO05D006135 1.8e-16 89.4 137 42.3
MSTRG.27029 Avicennia marina HOM05D005085 ORTHO05D006135 6.7e-16 87.4 138 45.7
FAN03G3191 Fragaria x ananassa HOM05D005085 ORTHO05D006135 1.5e-15 86.3 137 41.6
FAN10G0692 Fragaria x ananassa HOM05D005085 ORTHO05D006135 1.5e-15 86.3 137 42.3
FAN10G4178 Fragaria x ananassa HOM05D005085 ORTHO05D006135 1.5e-15 86.3 137 42.3
FAN01G1488 Fragaria x ananassa HOM05D005085 ORTHO05D006135 3.3e-15 85.1 137 41.6
Prupe.2G310400 Prunus persica HOM05D005085 ORTHO05D006135 5.6e-15 84.3 139 43.9
CAN.G968.3 Capsicum annuum HOM05D005085 ORTHO05D006135 9.6e-15 83.6 136 39.7
FvH4_7g31630 Fragaria vesca HOM05D005085 ORTHO05D006135 9.6e-15 83.6 137 41.6
FAN06G1404 Fragaria x ananassa HOM05D005085 ORTHO05D006135 9.6e-15 83.6 137 41.6
FAN06G4927 Fragaria x ananassa HOM05D005085 ORTHO05D006135 9.6e-15 83.6 137 41.6
TAR375G0122 Trochodendron aralioides HOM05D005085 ORTHO05D006135 1.3e-14 83.2 137 43.1
Nn3g18991 Nelumbo nucifera HOM05D005085 ORTHO05D006135 2.1e-14 82.4 133 42.1
arahy.Tifrunner.gnm1.ann1.T9I2S7 Arachis hypogaea HOM05D005085 ORTHO05D006135 3.7e-14 81.6 131 40.5
arahy.Tifrunner.gnm1.ann1.ZR5QI2 Arachis hypogaea HOM05D005085 ORTHO05D006135 3.7e-14 81.6 131 40.5
Lj1g0017393 Lotus japonicus HOM05D005085 ORTHO05D006135 3.7e-14 81.6 131 40.5
QL09p009347 Quercus lobata HOM05D005085 ORTHO05D006135 3.7e-14 81.6 137 40.9
COL.COLO4_16758 Corchorus olitorius HOM05D005085 ORTHO05D006135 4.8e-14 81.3 131 44.3
MD07G1288900 Malus domestica HOM05D005085 ORTHO05D006135 1.1e-13 80.1 132 43.2
Cpa.g.sc3.82 Carica papaya HOM05D005085 ORTHO05D006135 1.4e-13 79.7 139 42.4
Solyc03g083330.3 Solanum lycopersicum HOM05D005085 ORTHO05D006135 1.4e-13 79.7 137 40.1
Sopen03g023080 Solanum pennellii HOM05D005085 ORTHO05D006135 1.8e-13 79.3 137 39.4
Thecc.03G198500 Theobroma cacao HOM05D005085 ORTHO05D006135 1.8e-13 79.3 140 42.9
Potri.015G013400 Populus trichocarpa HOM05D005085 ORTHO05D006135 2.4e-13 79.0 139 41.0
Sabra15G0010900 Salix brachista HOM05D005085 ORTHO05D006135 2.4e-13 79.0 139 41.0
VMungo1309G2271 Vigna mungo HOM05D005085 ORTHO05D006135 3.1e-13 78.6 131 40.5
Ciclev10018947m.g Citrus clementina HOM05D005085 ORTHO05D006135 6.9e-13 77.4 139 43.2
Phvul.009G052800 Phaseolus vulgaris HOM05D005085 ORTHO05D006135 6.9e-13 77.4 131 40.5
TWI23G0498 Tripterygium wilfordii HOM05D005085 ORTHO05D006135 9.0e-13 77.0 142 38.0
Nn1g00241 Nelumbo nucifera HOM05D005085 ORTHO05D006135 1.5e-12 76.3 137 41.6
Lalb_Chr08g0240261 Lupinus albus HOM05D005085 ORTHO05D006135 2.0e-12 75.9 131 39.7
CANSAT21G1132 Cannabis sativa HOM05D005085 ORTHO05D006135 2.6e-12 75.5 136 39.7
PGR142G4232 Punica granatum HOM05D005085 ORTHO05D006135 2.6e-12 75.5 137 40.1
ClCG01G000430 Citrullus lanatus HOM05D005085 ORTHO05D006135 3.4e-12 75.1 138 40.6
Haze_00215 Corylus avellana HOM05D005085 ORTHO05D006135 3.4e-12 75.1 130 40.0
MELO3C005886.2 Cucumis melo HOM05D005085 ORTHO05D006135 4.5e-12 74.7 138 39.1
CsaV3_5G000500 Cucumis sativus L. HOM05D005085 ORTHO05D006135 4.5e-12 74.7 138 39.9
Glyma.06G128600 Glycine max HOM05D005085 ORTHO05D006135 5.8e-12 74.3 131 39.7
Potri.012G014900 Populus trichocarpa HOM05D005085 ORTHO05D006135 1.0e-11 73.6 139 39.6
TPR.G19373 Trifolium pratense HOM05D005085 ORTHO05D006135 1.0e-11 73.6 131 39.7
SGA_v2.0_scaffold192G40551 Striga asiatica HOM05D005085 ORTHO05D006135 1.3e-11 73.2 135 43.0
CiPaw.05G196500 Carya illinoinensis HOM05D005085 ORTHO05D006135 1.7e-11 72.8 133 39.8
RcHm_v2.0_Chr1g0380701 Rosa chinensis HOM05D005085 ORTHO05D006135 1.7e-11 72.8 136 41.2
Eucgr.K00374 Eucalyptus grandis HOM05D005085 ORTHO05D006135 2.2e-11 72.4 138 38.4
Atru.chr12.2188 Acer truncatum HOM05D005085 ORTHO05D006135 2.9e-11 72.0 130 40.8
Gohir.A05G414800 Gossypium hirsutum HOM05D005085 ORTHO05D006135 2.9e-11 72.0 126 44.4
SalBow4G0231 Salvia bowleyana HOM05D005085 ORTHO05D006135 2.9e-11 72.0 138 41.3
Cc02_g01600 Coffea canephora HOM05D005085 ORTHO05D006135 3.8e-11 71.6 116 42.2
Duzib068G1071 Durio zibethinus HOM05D005085 ORTHO05D006135 3.8e-11 71.6 140 40.0
Manes.01G183000 Manihot esculenta HOM05D005085 ORTHO05D006135 4.9e-11 71.2 142 40.1
Migut.F00216 Erythranthe guttata HOM05D005085 ORTHO05D006135 1.1e-10 70.1 116 40.5
Oeu037073.1 Olea europaea HOM05D005085 ORTHO05D006135 1.1e-10 70.1 116 41.4
Cfa016227 Carpinus fangiana HOM05D005085 ORTHO05D006135 1.4e-10 69.7 130 39.2
Oeu060983.2 Olea europaea HOM05D005085 ORTHO05D006135 1.4e-10 69.7 116 40.5
Oeu060984.1 Olea europaea HOM05D005085 ORTHO05D006135 1.4e-10 69.7 116 40.5
GSVIVG01038548001 Vitis vinifera HOM05D005085 ORTHO05D006135 1.4e-10 69.7 116 40.5
MBI06_g46249_MAGBIO Magnolia biondii HOM05D005085 ORTHO05D006135 1.9e-10 69.3 140 37.1
Peaxi162Scf00717g00321 Petunia axillaris HOM05D005085 ORTHO05D006135 2.5e-10 68.9 118 40.7
Sabra12G0017000 Salix brachista HOM05D005085 ORTHO05D006135 2.5e-10 68.9 139 38.1
Lsat_1_v5_gn_2_136081 Lactuca sativa HOM05D005085 ORTHO05D006135 9.3e-10 67.0 82 47.6
Psat5g078640 Pisum sativum HOM05D005085 ORTHO05D006135 9.3e-10 67.0 131 38.2
Gohir.1Z049319 Gossypium hirsutum HOM05D005085 ORTHO05D006135 1.2e-09 66.6 140 40.0
Medtr3g091420 Medicago truncatula HOM05D005085 ORTHO05D006135 1.2e-09 66.6 121 38.8
Ah.07g205630 Amaranthus hybridus HOM05D005085 ORTHO05D006135 2.1e-09 65.9 139 36.7
Nitab4.5_0005599g0010 Nicotiana tabacum HOM05D005085 ORTHO05D006135 2.1e-09 65.9 116 38.8
Nitab4.5_0010146g0010 Nicotiana tabacum HOM05D005085 ORTHO05D006135 2.7e-09 65.5 116 39.7
Migut.F01031 Erythranthe guttata HOM05D005085 ORTHO05D006135 3.5e-09 65.1 133 37.6
Lj1C1017G3 Lonicera japonica HOM05D005085 ORTHO05D006135 3.5e-09 65.1 69 53.6
Sed0021974 Sechium edule HOM05D005085 ORTHO05D006135 7.9e-09 63.9 116 40.5
PGSC0003DMG400009126 Solanum tuberosum HOM05D005085 ORTHO05D006135 2.3e-08 62.4 63 52.4
Ca_16704_v3 Cicer arietinum L. HOM05D005085 ORTHO05D006135 3.0e-08 62.0 125 35.2
Sc19g0000870 Simmondsia chinensis HOM05D005085 ORTHO05D006135 3.0e-08 62.0 134 39.6
Gohir.D02G140050 Gossypium hirsutum HOM05D003289 ORTHO05D004594 3.9e-08 61.6 53 60.4
AT5G24260 Arabidopsis thaliana HOM05D005085 ORTHO05D006135 5.1e-08 61.2 43 67.4
CARHR189270 Cardamine hirsuta HOM05D005085 ORTHO05D006135 5.1e-08 61.2 43 67.4
Duzib205G0228 Durio zibethinus HOM05D005085 ORTHO05D006135 5.1e-08 61.2 43 69.8
HanXRQChr04g0100521 Helianthus annuus HOM05D005085 ORTHO05D006135 8.7e-08 60.5 132 37.1
MBI06_g41630_MAGBIO Magnolia biondii HOM05D005085 ORTHO05D006135 8.7e-08 60.5 44 63.6
Hund11663 Selenicereus undatus HOM05D005085 ORTHO05D006135 8.7e-08 60.5 139 33.8
TAR629G3137 Trochodendron aralioides HOM05D005085 ORTHO05D006135 8.7e-08 60.5 115 39.1
Ah.03g137970 Amaranthus hybridus HOM05D005085 ORTHO05D006135 1.1e-07 60.1 116 38.8
AL6G35670 Arabidopsis lyrata HOM05D005085 ORTHO05D006135 1.1e-07 60.1 43 65.1
Gorai.005G156700 Gossypium raimondii HOM05D003289 ORTHO05D004594 1.1e-07 60.1 52 59.6
ATR0602G298 Amborella trichopoda HOM05D005085 ORTHO05D006135 1.5e-07 59.7 131 35.1
Dinv35331 Davidia involucrata HOM05D005085 ORTHO05D006135 1.5e-07 59.7 43 65.1
THA.LOC104814927 Tarenaya hassleriana HOM05D005085 ORTHO05D006135 1.5e-07 59.7 43 65.1
ECA238G3029 Erigeron canadensis HOM05D005085 ORTHO05D006135 1.9e-07 59.3 46 65.2
BcaB04g19831 Brassica carinata HOM05D005085 ORTHO05D006135 2.5e-07 58.9 43 65.1
BcaC04g23536 Brassica carinata HOM05D005085 ORTHO05D006135 2.5e-07 58.9 43 65.1
A09p06550 Brassica napus HOM05D005085 ORTHO05D006135 2.5e-07 58.9 43 65.1
C09p07310 Brassica napus HOM05D005085 ORTHO05D006135 2.5e-07 58.9 43 65.1
BolC9t53643H Brassica oleracea HOM05D005085 ORTHO05D006135 2.5e-07 58.9 43 65.1
BraA09t36300Z Brassica rapa HOM05D005085 ORTHO05D006135 2.5e-07 58.9 43 65.1
Carub.0006s2201 Capsella rubella HOM05D005085 ORTHO05D006135 2.5e-07 58.9 43 65.1
Thhalv10003701m.g Eutrema salsugineum HOM05D005085 ORTHO05D006135 2.5e-07 58.9 81 42.0
Sp2g23110 Schrenkiella parvula HOM05D005085 ORTHO05D006135 2.5e-07 58.9 43 65.1
Aa31LG11G3490 Aethionema arabicum HOM05D005085 ORTHO05D006135 3.3e-07 58.5 43 62.8
CDE04G2343 Ceratophyllum demersum HOM05D005085 ORTHO05D006135 4.3e-07 58.2 82 42.7
DCAR_008919 Daucus carota HOM05D005085 ORTHO05D006135 7.4e-07 57.4 40 70.0
PSO135G0649 Papaver somniferum HOM05D005085 ORTHO05D006135 9.6e-07 57.0 44 61.4
PSO384G0679 Papaver somniferum HOM05D005085 ORTHO05D006135 9.6e-07 57.0 44 61.4
EL10Ac3g05287 Beta vulgaris HOM05D005085 ORTHO05D006135 3.7e-06 55.1 138 34.8


User provided reference genes

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