Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1C100T5 Lonicera japonica HOM05D004954 ORTHO05D006267 0.0e+00 1194.1 611 100.0
CSS0025127 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D006267 0.0e+00 1093.2 615 90.7
Dinv10429 Davidia involucrata HOM05D004954 ORTHO05D006267 0.0e+00 1081.2 615 90.6
Duzib211G0600 Durio zibethinus HOM05D004954 ORTHO05D006267 0.0e+00 1079.7 616 89.4
Thecc.01G211600 Theobroma cacao HOM05D004954 ORTHO05D006267 0.0e+00 1075.1 616 89.3
ECA248G3210 Erigeron canadensis HOM05D004954 ORTHO05D006267 1.2e-309 1065.8 613 87.9
Rhsim13G0052400 Rhododendron simsii HOM05D004954 ORTHO05D006267 6.0e-309 1063.5 639 86.2
Gohir.D07G166900 Gossypium hirsutum HOM05D004954 ORTHO05D006267 6.6e-308 1060.1 615 87.5
Actinidia34548 Actinidia chinensis HOM05D004954 ORTHO05D006267 1.1e-307 1059.3 615 88.3
Gorai.N003600 Gossypium raimondii HOM05D004954 ORTHO05D006267 1.1e-307 1059.3 615 87.5
CANSAT01G1324 Cannabis sativa HOM05D004954 ORTHO05D006267 3.3e-307 1057.7 616 87.7
Prupe.8G191000 Prunus persica HOM05D004954 ORTHO05D006267 3.3e-307 1057.7 616 87.7
DCAR_012691 Daucus carota HOM05D004954 ORTHO05D006267 4.7e-306 1053.9 618 87.2
CiPaw.13G054900 Carya illinoinensis HOM05D004954 ORTHO05D006267 2.3e-305 1051.6 616 87.3
Cc01_g16190 Coffea canephora HOM05D004954 ORTHO05D006267 5.2e-305 1050.4 614 87.1
Gohir.A07G159500 Gossypium hirsutum HOM05D004954 ORTHO05D006267 1.2e-304 1049.3 615 86.8
QL09p046153 Quercus lobata HOM05D004954 ORTHO05D006267 5.8e-304 1047.0 616 87.3
Actinidia23789 Actinidia chinensis HOM05D004954 ORTHO05D006267 9.8e-304 1046.2 654 84.3
MD10G1152500 Malus domestica HOM05D004954 ORTHO05D006267 1.3e-303 1045.8 616 86.9
Dinv28815 Davidia involucrata HOM05D004954 ORTHO05D006267 2.9e-303 1044.6 616 87.5
CsaV3_7G026900 Cucumis sativus L. HOM05D004954 ORTHO05D006267 4.9e-303 1043.9 617 86.5
PGR044G2625 Punica granatum HOM05D004954 ORTHO05D006267 4.9e-303 1043.9 615 86.3
HanXRQChr01g0007231 Helianthus annuus HOM05D004954 ORTHO05D006267 6.4e-303 1043.5 616 86.9
MELO3C012723.2 Cucumis melo HOM05D004954 ORTHO05D006267 8.3e-303 1043.1 615 86.8
TWI18G0293 Tripterygium wilfordii HOM05D004954 ORTHO05D006267 8.3e-303 1043.1 616 86.2
Sed0007567 Sechium edule HOM05D004954 ORTHO05D006267 9.2e-302 1039.6 615 86.3
Eucgr.H00730 Eucalyptus grandis HOM05D004954 ORTHO05D006267 2.7e-301 1038.1 616 86.0
RcHm_v2.0_Chr6g0282881 Rosa chinensis HOM05D004954 ORTHO05D006267 3.9e-300 1034.2 616 85.9
Atru.chr5.2285 Acer truncatum HOM05D004954 ORTHO05D006267 1.5e-299 1032.3 617 86.1
FAN27G0710 Fragaria x ananassa HOM05D004954 ORTHO05D006267 1.9e-299 1031.9 626 84.5
FAN24G2804 Fragaria x ananassa HOM05D004954 ORTHO05D006267 5.6e-299 1030.4 625 85.0
CSS0003762 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D006267 9.5e-299 1029.6 616 86.9
Potri.014G191100 Populus trichocarpa HOM05D004954 ORTHO05D006267 1.2e-298 1029.2 616 86.0
SalBow6G4493 Salvia bowleyana HOM05D004954 ORTHO05D006267 3.6e-298 1027.7 615 85.2
Ciclev10004559m.g Citrus clementina HOM05D004954 ORTHO05D006267 4.0e-297 1024.2 616 84.7
ClCG09G008140 Citrullus lanatus HOM05D004954 ORTHO05D006267 1.5e-296 1022.3 615 85.5
vmacro21304 Vaccinium macrocarpon HOM05D004954 ORTHO05D006267 9.9e-296 1019.6 751 73.4
THA.LOC104818994 Tarenaya hassleriana HOM05D004954 ORTHO05D006267 6.0e-293 1010.4 616 83.4
MSTRG.21308 Avicennia marina HOM05D004954 ORTHO05D006267 1.3e-292 1009.2 617 84.3
Haze_25215 Corylus avellana HOM05D004954 ORTHO05D006267 7.3e-291 1003.4 679 77.8
Oeu003633.1 Olea europaea HOM05D004954 ORTHO05D006267 8.1e-290 1000.0 615 83.1
Lalb_Chr19g0124251 Lupinus albus HOM05D004954 ORTHO05D006267 1.5e-288 995.7 616 83.1
VMungo0251G2039 Vigna mungo HOM05D004954 ORTHO05D006267 3.4e-288 994.6 616 82.8
DCAR_018627 Daucus carota HOM05D004954 ORTHO05D006267 4.4e-288 994.2 610 82.5
Phvul.003G003500 Phaseolus vulgaris HOM05D004954 ORTHO05D006267 1.3e-287 992.6 616 82.5
Nn8g39913 Nelumbo nucifera HOM05D004954 ORTHO05D006267 1.2e-285 986.1 616 81.5
Hund09467 Selenicereus undatus HOM05D004954 ORTHO05D006267 1.2e-285 986.1 611 82.5
CAN.G874.27 Capsicum annuum HOM05D004954 ORTHO05D006267 1.6e-285 985.7 615 81.6
Glyma.17G145700 Glycine max HOM05D004954 ORTHO05D006267 4.6e-285 984.2 618 82.0
TPR.G29775 Trifolium pratense HOM05D004954 ORTHO05D006267 8.7e-284 979.9 622 81.0
EL10Ac5g10627 Beta vulgaris HOM05D004954 ORTHO05D006267 9.6e-283 976.5 610 81.3
arahy.Tifrunner.gnm1.ann1.4YG7MF Arachis hypogaea HOM05D004954 ORTHO05D006267 3.6e-282 974.5 617 81.7
arahy.Tifrunner.gnm1.ann1.E22JQ7 Arachis hypogaea HOM05D004954 ORTHO05D006267 3.6e-282 974.5 617 81.7
A06p39130 Brassica napus HOM05D004954 ORTHO05D006267 6.2e-282 973.8 615 80.8
PSO170G3087 Papaver somniferum HOM05D004954 ORTHO05D006267 8.1e-282 973.4 615 81.0
Lj2g0006494 Lotus japonicus HOM05D004954 ORTHO05D006267 1.4e-281 972.6 616 81.5
PSO063G7187 Papaver somniferum HOM05D004954 ORTHO05D006267 1.4e-281 972.6 615 80.8
BolC7t44441H Brassica oleracea HOM05D004954 ORTHO05D006267 5.3e-281 970.7 615 80.5
Thhalv10003836m.g Eutrema salsugineum HOM05D004954 ORTHO05D006267 5.3e-281 970.7 615 80.8
Sopen06g034480 Solanum pennellii HOM05D004954 ORTHO05D006267 5.3e-281 970.7 615 80.7
C07p39210 Brassica napus HOM05D004954 ORTHO05D006267 1.2e-280 969.5 615 80.5
Solyc06g083090.4 Solanum lycopersicum HOM05D004954 ORTHO05D006267 2.0e-280 968.8 615 80.3
AT5G48520 Arabidopsis thaliana HOM05D004954 ORTHO05D006267 7.6e-280 966.8 615 80.3
Ah.11g051040 Amaranthus hybridus HOM05D004954 ORTHO05D006267 3.8e-279 964.5 642 77.7
MBI18_g30537_MAGBIO Magnolia biondii HOM05D004954 ORTHO05D006267 1.9e-278 962.2 630 78.1
Migut.D00727 Erythranthe guttata HOM05D004954 ORTHO05D006267 4.2e-278 961.1 615 81.5
Sp2g18880 Schrenkiella parvula HOM05D004954 ORTHO05D006267 7.1e-278 960.3 615 80.0
Carub.0008s0810 Capsella rubella HOM05D004954 ORTHO05D006267 9.3e-278 959.9 615 79.8
unitig_37.g12142 Utricularia gibba HOM05D004954 ORTHO05D006267 9.3e-278 959.9 615 79.8
Nitab4.5_0011983g0020 Nicotiana tabacum HOM05D004954 ORTHO05D006267 1.6e-277 959.1 611 80.4
Peaxi162Scf01242g00120 Petunia axillaris HOM05D004954 ORTHO05D006267 1.3e-276 956.1 611 79.9
Medtr1g038570 Medicago truncatula HOM05D004954 ORTHO05D006267 5.1e-276 954.1 622 78.6
BraA06t26827Z Brassica rapa HOM05D004954 ORTHO05D006267 6.7e-276 953.7 648 76.7
Nitab4.5_0002463g0060 Nicotiana tabacum HOM05D004954 ORTHO05D006267 7.4e-275 950.3 611 79.9
BcaC06g30786 Brassica carinata HOM05D004954 ORTHO05D006267 2.6e-272 941.8 615 78.5
Aqoxy7G02924 Aquilegia oxysepala HOM05D004954 ORTHO05D006267 1.1e-270 936.4 616 78.9
SGA_v2.0_scaffold29G12103 Striga asiatica HOM05D004954 ORTHO05D006267 1.1e-270 936.4 575 83.7
Manes.13G054100 Manihot esculenta HOM05D004954 ORTHO05D006267 1.8e-268 929.1 542 87.8
Sopen06g034490 Solanum pennellii HOM05D004954 ORTHO05D006267 1.6e-266 922.5 600 79.2
ATR0824G007 Amborella trichopoda HOM05D004954 ORTHO05D006267 8.2e-266 920.2 617 75.7
AUR62008123 Chenopodium quinoa HOM05D004954 ORTHO05D006267 8.4e-263 910.2 630 75.9
Solyc06g083100.2 Solanum lycopersicum HOM05D004954 ORTHO05D006267 2.5e-262 908.7 602 78.1
Aa31sc420G20 Aethionema arabicum HOM05D004954 ORTHO05D006267 5.5e-262 907.5 583 80.1
TAR375G0531 Trochodendron aralioides HOM05D004954 ORTHO05D006267 1.8e-260 902.5 639 74.6
AUR62028702 Chenopodium quinoa HOM05D004954 ORTHO05D006267 6.3e-258 894.0 615 76.3
HPP92_017515 Vanilla planifolia HOM05D004954 ORTHO05D006267 8.5e-255 883.6 615 72.8
Ca_12404_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 1.5e-251 872.8 618 74.6
FvH4_2g17860 Fragaria vesca HOM05D004954 ORTHO05D006267 1.5e-251 872.8 517 85.9
Psat6g025280 Pisum sativum HOM05D004954 ORTHO05D006267 3.7e-250 868.2 576 79.2
Cfa002884 Carpinus fangiana HOM05D004954 ORTHO05D006267 8.2e-250 867.1 517 85.3
CDE04G1241 Ceratophyllum demersum HOM05D004954 ORTHO05D006267 7.7e-248 860.5 613 73.4
Sabra14G0144200 Salix brachista HOM05D004954 ORTHO05D006267 6.7e-244 847.4 511 85.9
Os06g0186500 Oryza sativa ssp. japonica HOM05D004954 ORTHO05D006267 1.0e-239 833.6 616 68.5
Lsat_1_v5_gn_5_178381 Lactuca sativa HOM05D004954 ORTHO05D006267 3.2e-230 802.0 553 78.5
Sc17g0001680 Simmondsia chinensis HOM05D004954 ORTHO05D006267 1.9e-222 776.2 466 84.1
Atru.chr12.963 Acer truncatum HOM05D004954 ORTHO05D006267 7.2e-222 774.2 445 88.5
Pp3c20_5680 Physcomitrium patens HOM05D004954 ORTHO05D006267 1.7e-218 763.1 617 61.4
FAN15G2379 Fragaria x ananassa HOM05D004954 ORTHO05D006267 5.5e-214 748.0 558 72.8
SMO367G0402 Selaginella moellendorffii HOM05D004954 ORTHO05D006267 4.7e-213 745.0 622 60.9
Mapoly0098s0023 Marchantia polymorpha HOM05D004954 ORTHO05D006267 2.0e-200 703.0 615 59.0
AagrBONN_evm.TU.Sc2ySwM_344.252 Anthoceros agrestis HOM05D004954 ORTHO05D006267 2.2e-186 656.4 646 52.6
Cpa.g.sc8.76 Carica papaya HOM05D004954 ORTHO05D006267 1.7e-178 630.2 360 90.6
COL.COLO4_03294 Corchorus olitorius HOM05D004954 ORTHO05D006267 1.7e-170 603.6 336 92.0
GSVIVG01006234001 Vitis vinifera HOM05D004954 ORTHO05D006267 1.0e-167 594.3 482 68.5
CARHR183510 Cardamine hirsuta HOM05D004954 ORTHO05D006267 2.4e-161 573.2 358 83.0
Os07g0185700 Oryza sativa ssp. japonica HOM05D004954 ORTHO05D006267 5.4e-161 572.0 617 50.1
Zm00001eb301770 Zea mays HOM05D004954 ORTHO05D006267 1.3e-151 540.8 617 47.2
arahy.Tifrunner.gnm1.ann1.R4R8P3 Arachis hypogaea HOM05D004954 ORTHO05D006267 1.3e-149 534.3 390 74.1
Zm00001eb278340 Zea mays HOM05D004954 ORTHO05D006267 4.3e-142 509.2 364 69.8
SMO302G0009 Selaginella moellendorffii HOM05D004954 ORTHO05D006267 2.5e-129 466.8 594 47.5
CBR_g32699 Chara braunii HOM05D004954 ORTHO05D006267 4.4e-126 456.1 511 46.0
vmacro21300 Vaccinium macrocarpon HOM05D004954 ORTHO05D006267 7.4e-118 428.7 279 81.7
MD05G1162300 Malus domestica HOM05D004954 ORTHO05D006267 5.3e-116 422.5 380 65.0
MD05G1161600 Malus domestica HOM05D004954 ORTHO05D006267 1.0e-106 391.7 453 53.9
GSVIVG01002254001 Vitis vinifera HOM05D004954 ORTHO05D006267 4.1e-76 290.0 175 83.4
COL.COLO4_03295 Corchorus olitorius HOM05D004954 ORTHO05D006267 3.9e-74 283.5 171 83.6
SEGI_36119 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 4.4e-70 270.0 188 68.1
FAN15G2003 Fragaria x ananassa HOM05D004954 ORTHO05D006267 3.1e-63 247.3 148 85.8
Sc17g0001690 Simmondsia chinensis HOM05D004954 ORTHO05D006267 5.2e-63 246.5 142 87.3
FAN15G2507 Fragaria x ananassa HOM05D004954 ORTHO05D006267 4.2e-60 236.9 134 88.8
Cpa.g.sc8.77 Carica papaya HOM05D004954 ORTHO05D006267 6.6e-50 203.0 116 84.5
MD05G1161700 Malus domestica HOM05D004954 ORTHO05D006267 7.3e-49 199.5 122 82.0
Atru.chr12.964 Acer truncatum HOM05D004954 ORTHO05D006267 2.1e-48 198.0 151 69.5
MBI18_g37244_MAGBIO Magnolia biondii HOM05D004954 ORTHO05D006267 3.8e-45 187.2 105 83.8
Sabra14G0144300 Salix brachista HOM05D004954 ORTHO05D006267 2.7e-43 181.0 106 83.0
SEGI_30399 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 6.0e-43 179.9 135 68.9
VMungo0647G2582 Vigna mungo HOM05D004954 ORTHO05D006267 4.3e-41 173.7 103 85.4
Ca_12408_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 1.2e-38 165.6 178 52.8
MD05G1160200 Malus domestica HOM05D004954 ORTHO05D006267 2.5e-33 147.9 94 80.9
VMungo0647G1109 Vigna mungo HOM05D004954 ORTHO05D006267 1.7e-29 135.2 96 77.1
CBR_g49514 Chara braunii HOM05D000019 ORTHO05D001702 1.6e-27 128.6 105 56.2
Ca_12409_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 1.6e-27 128.6 72 86.1
SEGI_32998 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 4.3e-25 120.6 86 73.3
QL09p053445 Quercus lobata HOM05D004954 ORTHO05D030058 2.9e-21 107.8 117 60.7
PGSC0003DMG400008807 Solanum tuberosum HOM05D004954 ORTHO05D006267 1.4e-20 105.5 59 78.0
PGSC0003DMG400020114 Solanum tuberosum HOM05D004954 ORTHO05D006267 1.4e-20 105.5 59 78.0
MD05G1162200 Malus domestica HOM05D004954 ORTHO05D006267 1.9e-20 105.1 58 84.5
Ciclev10018232m.g Citrus clementina HOM05D004954 ORTHO05D006267 1.6e-19 102.1 76 69.7
Cfa002883 Carpinus fangiana HOM05D020463 ORTHO05D022255 2.3e-18 98.2 54 85.2
VMungo0464G0043 Vigna mungo HOM05D004954 ORTHO05D006267 2.0e-17 95.1 59 72.9
VMungo0720G1677 Vigna mungo HOM05D002055 ORTHO05D002120 2.0e-17 95.1 59 72.9
Glyma.09G284100 Glycine max HOM05D004954 ORTHO05D006267 4.1e-15 87.4 50 78.0
Hma1.2p1_0066F.1_g035760 Hydrangea macrophylla HOM05D004954 ORTHO05D006267 3.4e-14 84.3 56 67.9
MD05G1162500 Malus domestica HOM05D004954 ORTHO05D006267 1.2e-11 75.9 80 52.5
TAR375G0464 Trochodendron aralioides HOM05D004954 ORTHO05D006267 4.7e-11 73.9 44 75.0
CSS0000571 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D014145 8.8e-10 69.7 48 77.1
Medtr3g114845 Medicago truncatula HOM05D004954 ORTHO05D006267 9.7e-09 66.2 51 52.9
SEGI_31941 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 9.7e-09 66.2 38 76.3
QL09p053081 Quercus lobata HOM05D002786 ORTHO05D030058 1.4e-07 62.4 43 76.7
Hma1.2p1_0717F.1_g208260 Hydrangea macrophylla HOM05D007286 ORTHO05D008955 5.3e-07 60.5 34 85.3
Hma1.2p1_2056F.1_g312790 Hydrangea macrophylla HOM05D007286 ORTHO05D008955 9.1e-07 59.7 33 87.9
Hma1.2p1_0484F.1_g162800 Hydrangea macrophylla HOM05D004954 ORTHO05D008776 7.7e-06 56.6 33 81.8


User provided reference genes

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