Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1C0T8 Lonicera japonica HOM05D004153 ORTHO05D004678 1.0e-105 386.7 192 100.0
Potri.002G206100 Populus trichocarpa HOM05D004153 ORTHO05D004678 6.7e-49 198.0 168 58.9
Hma1.2p1_0209F.1_g088580 Hydrangea macrophylla HOM05D004153 ORTHO05D004678 1.5e-48 196.8 155 63.9
COL.COLO4_23373 Corchorus olitorius HOM05D004153 ORTHO05D004678 2.6e-48 196.1 163 59.5
Manes.04G056100 Manihot esculenta HOM05D004153 ORTHO05D004678 4.4e-48 195.3 163 58.9
Potri.014G131400 Populus trichocarpa HOM05D004153 ORTHO05D004678 5.7e-48 194.9 166 59.6
Sabra02G0153200 Salix brachista HOM05D004153 ORTHO05D004678 1.3e-47 193.7 168 57.7
Peaxi162Scf00067g00254 Petunia axillaris HOM05D004153 ORTHO05D004678 2.2e-47 193.0 156 60.9
PGSC0003DMG400035200 Solanum tuberosum HOM05D004153 ORTHO05D004678 2.8e-47 192.6 151 61.6
Solyc09g074910.1 Solanum lycopersicum HOM05D004153 ORTHO05D004678 4.8e-47 191.8 153 60.8
Duzib138G0244 Durio zibethinus HOM05D004153 ORTHO05D004678 6.3e-47 191.4 163 59.5
Migut.D00197 Erythranthe guttata HOM05D004153 ORTHO05D004678 1.1e-46 190.7 160 58.8
Lj1C32T8 Lonicera japonica HOM05D004153 ORTHO05D004678 1.1e-46 190.7 163 66.3
DCAR_002817 Daucus carota HOM05D004153 ORTHO05D004678 1.4e-46 190.3 158 63.3
Sopen09g029730 Solanum pennellii HOM05D004153 ORTHO05D004678 1.4e-46 190.3 153 60.1
CAN.G339.31 Capsicum annuum HOM05D004153 ORTHO05D004678 4.1e-46 188.7 153 61.4
Cc01_g20660 Coffea canephora HOM05D004153 ORTHO05D004678 2.0e-45 186.4 159 57.9
Nitab4.5_0000619g0070 Nicotiana tabacum HOM05D004153 ORTHO05D004678 2.0e-45 186.4 153 60.8
Nitab4.5_0003901g0020 Nicotiana tabacum HOM05D004153 ORTHO05D004678 2.0e-45 186.4 153 60.8
QL12p027168 Quercus lobata HOM05D004153 ORTHO05D004678 2.0e-45 186.4 162 57.4
Haze_04898 Corylus avellana HOM05D004153 ORTHO05D004678 4.5e-45 185.3 156 59.6
FAN15G0276 Fragaria x ananassa HOM05D004153 ORTHO05D004678 5.9e-45 184.9 163 57.7
Lj1g0005892 Lotus japonicus HOM05D004153 ORTHO05D004678 1.0e-44 184.1 163 54.0
SalBow3G0249 Salvia bowleyana HOM05D004153 ORTHO05D004678 2.9e-44 182.6 161 57.1
FvH4_2g25400 Fragaria vesca HOM05D004153 ORTHO05D004678 3.8e-44 182.2 155 60.0
FAN24G2766 Fragaria x ananassa HOM05D004153 ORTHO05D004678 3.8e-44 182.2 155 60.0
RcHm_v2.0_Chr6g0293581 Rosa chinensis HOM05D004153 ORTHO05D004678 3.8e-44 182.2 155 58.7
Aqoxy2G02983 Aquilegia oxysepala HOM05D004153 ORTHO05D004678 6.5e-44 181.4 154 55.8
TWI23G0022 Tripterygium wilfordii HOM05D004153 ORTHO05D004678 6.5e-44 181.4 162 54.9
Lsat_1_v5_gn_5_190540 Lactuca sativa HOM05D004153 ORTHO05D004678 8.5e-44 181.0 160 55.6
Gohir.A12G010800 Gossypium hirsutum HOM05D004153 ORTHO05D004678 1.1e-43 180.6 163 57.7
Atru.chr5.1180 Acer truncatum HOM05D004153 ORTHO05D004678 1.4e-43 180.3 163 54.6
Gohir.D12G011200 Gossypium hirsutum HOM05D004153 ORTHO05D004678 1.4e-43 180.3 163 57.1
Gorai.008G011200 Gossypium raimondii HOM05D004153 ORTHO05D004678 1.4e-43 180.3 163 57.1
Manes.05G063900 Manihot esculenta HOM05D004153 ORTHO05D004678 1.4e-43 180.3 163 56.4
FAN15G2246 Fragaria x ananassa HOM05D000802 ORTHO05D001074 2.5e-43 179.5 165 56.4
Oeu030970.1 Olea europaea HOM05D004153 ORTHO05D004678 2.5e-43 179.5 161 56.5
CiPaw.07G106600 Carya illinoinensis HOM05D004153 ORTHO05D004678 5.5e-43 178.3 160 53.8
Prupe.8G258500 Prunus persica HOM05D004153 ORTHO05D004678 1.6e-42 176.8 153 57.5
Lalb_Chr15g0078571 Lupinus albus HOM05D004153 ORTHO05D004678 8.0e-42 174.5 168 54.2
FAN20G2301 Fragaria x ananassa HOM05D004153 ORTHO05D004678 1.0e-41 174.1 167 55.7
PSO017G2667 Papaver somniferum HOM05D004153 ORTHO05D004678 1.0e-41 174.1 155 52.9
Ciclev10007035m.g Citrus clementina HOM05D004153 ORTHO05D004678 1.8e-41 173.3 156 53.8
Cfa005949 Carpinus fangiana HOM05D004153 ORTHO05D004678 3.0e-41 172.6 130 61.5
PGR119G1654 Punica granatum HOM05D004153 ORTHO05D004678 3.9e-41 172.2 166 54.2
PGR119G2063 Punica granatum HOM05D004153 ORTHO05D004678 3.9e-41 172.2 166 54.2
CANSAT78G0904 Cannabis sativa HOM05D004153 ORTHO05D004678 5.2e-41 171.8 163 54.0
Lj3P816T18 Lonicera japonica HOM05D004153 ORTHO05D004678 5.2e-41 171.8 155 53.5
PSO675G8366 Papaver somniferum HOM05D004153 ORTHO05D004678 6.7e-41 171.4 155 51.6
FAN27G1399 Fragaria x ananassa HOM05D004153 ORTHO05D004678 8.8e-41 171.0 162 54.3
MD03G1285300 Malus domestica HOM05D004153 ORTHO05D004678 8.8e-41 171.0 153 56.9
TAR365G1014 Trochodendron aralioides HOM05D004153 ORTHO05D004678 1.1e-40 170.6 141 57.4
Glyma.03G213300 Glycine max HOM05D004153 ORTHO05D004678 7.4e-40 167.9 155 51.0
HanXRQChr10g0284631 Helianthus annuus HOM05D004153 ORTHO05D004678 7.4e-40 167.9 159 50.9
Phvul.001G205900 Phaseolus vulgaris HOM05D004153 ORTHO05D004678 2.8e-39 166.0 164 51.8
THA.LOC104802169 Tarenaya hassleriana HOM05D004153 ORTHO05D004678 2.8e-39 166.0 152 53.3
arahy.Tifrunner.gnm1.ann1.3INE6D Arachis hypogaea HOM05D004153 ORTHO05D004678 3.7e-39 165.6 148 55.4
Psat3g022920 Pisum sativum HOM05D004153 ORTHO05D004678 3.7e-39 165.6 169 53.3
unitig_0.g1178 Utricularia gibba HOM05D004153 ORTHO05D004678 3.7e-39 165.6 160 49.4
Carub.0004s3048 Capsella rubella HOM05D004153 ORTHO05D004678 4.8e-39 165.2 158 53.2
SGA_v2.0_scaffold2G01404 Striga asiatica HOM05D004153 ORTHO05D004678 1.8e-38 163.3 163 50.9
AL4G47340 Arabidopsis lyrata HOM05D004153 ORTHO05D004678 3.1e-38 162.5 158 51.9
AT2G47770 Arabidopsis thaliana HOM05D004153 ORTHO05D004678 3.1e-38 162.5 158 51.9
Cpa.g.sc9.210 Carica papaya HOM05D004153 ORTHO05D004678 3.1e-38 162.5 156 52.6
Lsat_1_v5_gn_9_1141 Lactuca sativa HOM05D004153 ORTHO05D004678 3.1e-38 162.5 160 49.4
Lalb_Chr18g0047121 Lupinus albus HOM05D004153 ORTHO05D004678 3.1e-38 162.5 175 49.7
Nn4g25841 Nelumbo nucifera HOM05D004153 ORTHO05D004678 4.1e-38 162.2 163 51.5
RcHm_v2.0_Chr4g0422241 Rosa chinensis HOM05D004153 ORTHO05D004678 4.1e-38 162.2 152 53.3
Thecc.01G297300 Theobroma cacao HOM05D004153 ORTHO05D004678 7.0e-38 161.4 163 52.1
CANSAT01G1893 Cannabis sativa HOM05D004153 ORTHO05D004678 9.1e-38 161.0 163 52.8
VMungo1383G3271 Vigna mungo HOM05D004153 ORTHO05D004678 1.2e-37 160.6 164 48.2
Lj3P819T20 Lonicera japonica HOM05D004153 ORTHO05D004678 1.6e-37 160.2 142 53.5
TWI53G1241 Tripterygium wilfordii HOM05D004153 ORTHO05D004678 1.6e-37 160.2 155 49.7
CARHR143140 Cardamine hirsuta HOM05D004153 ORTHO05D004678 2.0e-37 159.8 158 50.6
Ciclev10022120m.g Citrus clementina HOM05D004153 ORTHO05D004678 2.0e-37 159.8 159 54.7
Nn5g27910 Nelumbo nucifera HOM05D004153 ORTHO05D004678 2.6e-37 159.5 161 47.8
Atru.chr4.2837 Acer truncatum HOM05D004153 ORTHO05D004678 2.2e-36 156.4 164 47.6
HanXRQChr01g0001291 Helianthus annuus HOM05D004153 ORTHO05D004678 5.0e-36 155.2 132 56.1
Thecc.04G284700 Theobroma cacao HOM05D004153 ORTHO05D004678 1.1e-35 154.1 163 48.5
Aa31LG1G29110 Aethionema arabicum HOM05D004153 ORTHO05D004678 1.5e-35 153.7 161 49.1
Thhalv10001647m.g Eutrema salsugineum HOM05D004153 ORTHO05D004678 3.2e-35 152.5 159 50.9
Medtr7g108650 Medicago truncatula HOM05D004153 ORTHO05D004678 5.5e-35 151.8 169 47.9
Prupe.1G136800 Prunus persica HOM05D004153 ORTHO05D004678 5.5e-35 151.8 147 49.7
A04p35060 Brassica napus HOM05D004153 ORTHO05D004678 7.2e-35 151.4 158 50.0
BraA04t18942Z Brassica rapa HOM05D004153 ORTHO05D004678 7.2e-35 151.4 158 50.6
Glyma.09G044900 Glycine max HOM05D004153 ORTHO05D004678 7.2e-35 151.4 157 48.4
Duzib052G0234 Durio zibethinus HOM05D004153 ORTHO05D004678 9.4e-35 151.0 163 47.9
Haze_01203 Corylus avellana HOM05D004153 ORTHO05D004678 1.6e-34 150.2 164 47.6
Eucgr.B01312 Eucalyptus grandis HOM05D004153 ORTHO05D004678 1.6e-34 150.2 159 47.2
EL10Ac6g15659 Beta vulgaris HOM05D004153 ORTHO05D004678 2.1e-34 149.8 160 46.9
BcaC02g06991 Brassica carinata HOM05D004153 ORTHO05D004678 3.6e-34 149.1 158 49.4
BolC4t28778H Brassica oleracea HOM05D004153 ORTHO05D004678 3.6e-34 149.1 158 49.4
Glyma.15G147800 Glycine max HOM05D004153 ORTHO05D004678 4.7e-34 148.7 157 46.5
C04p72970 Brassica napus HOM05D004153 ORTHO05D004678 1.0e-33 147.5 158 48.7
Lalb_Chr18g0051691 Lupinus albus HOM05D004153 ORTHO05D004678 1.0e-33 147.5 157 48.4
MBI18_g21824_MAGBIO Magnolia biondii HOM05D004153 ORTHO05D004678 1.8e-33 146.7 152 48.7
BcaB06g29494 Brassica carinata HOM05D004153 ORTHO05D004678 6.7e-33 144.8 158 48.7
BcaB06g29497 Brassica carinata HOM05D004153 ORTHO05D004678 6.7e-33 144.8 158 48.7
CSS0027100 Camellia sinensis var. sinensis HOM05D004153 ORTHO05D004678 6.7e-33 144.8 158 46.8
BcaB06g29496 Brassica carinata HOM05D004153 ORTHO05D004678 1.2e-32 144.1 151 49.0
Sed0026977 Sechium edule HOM05D004153 ORTHO05D004678 1.2e-32 144.1 155 48.4
Sp4g29700 Schrenkiella parvula HOM05D004153 ORTHO05D004678 1.5e-32 143.7 158 48.7
TPR.G13834 Trifolium pratense HOM05D004153 ORTHO05D004678 4.4e-32 142.1 157 47.1
Phvul.009G248000 Phaseolus vulgaris HOM05D004153 ORTHO05D004678 5.7e-32 141.7 157 48.4
Lj6g0000547 Lotus japonicus HOM05D004153 ORTHO05D004678 7.5e-32 141.4 163 44.8
AUR62033157 Chenopodium quinoa HOM05D004153 ORTHO05D004678 9.7e-32 141.0 159 42.8
AUR62033169 Chenopodium quinoa HOM05D004153 ORTHO05D004678 9.7e-32 141.0 159 42.8
ClCG09G006030 Citrullus lanatus HOM05D004153 ORTHO05D004678 9.7e-32 141.0 164 44.5
FAN07G0961 Fragaria x ananassa HOM05D004153 ORTHO05D004678 9.7e-32 141.0 147 49.7
VMungo1309G0390 Vigna mungo HOM05D004153 ORTHO05D004678 1.3e-31 140.6 157 47.1
Ah.08g213200 Amaranthus hybridus HOM05D004153 ORTHO05D004678 2.8e-31 139.4 159 40.9
Psat1g153880 Pisum sativum HOM05D004153 ORTHO05D004678 2.8e-31 139.4 157 46.5
EL10Ac3g06596 Beta vulgaris HOM05D004153 ORTHO05D004678 6.3e-31 138.3 163 42.3
Gohir.D10G170400 Gossypium hirsutum HOM05D004153 ORTHO05D004678 6.3e-31 138.3 153 45.1
HPP92_016940 Vanilla planifolia HOM05D004153 ORTHO05D004678 6.3e-31 138.3 156 47.4
MELO3C006663.2 Cucumis melo HOM05D004153 ORTHO05D004678 8.2e-31 137.9 165 44.2
Sed0018454 Sechium edule HOM05D004153 ORTHO05D004678 8.2e-31 137.9 163 45.4
Gohir.A10G164100 Gossypium hirsutum HOM05D004153 ORTHO05D004678 1.1e-30 137.5 153 45.1
Gorai.011G190200 Gossypium raimondii HOM05D004153 ORTHO05D004678 2.4e-30 136.3 153 44.4
BcaC02g12543 Brassica carinata HOM05D004153 ORTHO05D004678 3.1e-30 136.0 158 49.4
C04p00110 Brassica napus HOM05D004153 ORTHO05D004678 4.1e-30 135.6 158 49.4
CsaV3_3G014620 Cucumis sativus L. HOM05D004153 ORTHO05D004678 5.3e-30 135.2 160 43.1
Potri.010G025200 Populus trichocarpa HOM05D004153 ORTHO05D004678 5.3e-30 135.2 160 45.6
PGR031G1230 Punica granatum HOM05D004153 ORTHO05D004678 9.1e-30 134.4 165 43.0
BolC4t21658H Brassica oleracea HOM05D004153 ORTHO05D004678 1.2e-29 134.0 158 48.7
AUR62008617 Chenopodium quinoa HOM05D004153 ORTHO05D004678 2.0e-29 133.3 159 42.1
TWI73G1192 Tripterygium wilfordii HOM05D004153 ORTHO05D004678 4.5e-29 132.1 144 45.1
Rhsim01G0283900 Rhododendron simsii HOM05D004153 ORTHO05D004678 1.0e-28 131.0 161 48.4
Manes.03G195100 Manihot esculenta HOM05D004153 ORTHO05D004678 6.5e-28 128.3 146 46.6
BraA05t19015Z Brassica rapa HOM05D004153 ORTHO05D004678 1.2e-26 124.0 158 47.5
Rhsim04G0221600 Rhododendron simsii HOM05D004153 ORTHO05D004678 1.2e-26 124.0 157 46.5
Sc13g0003480 Simmondsia chinensis HOM05D004153 ORTHO05D004678 2.7e-26 122.9 156 41.0
MD11G1304700 Malus domestica HOM05D004153 ORTHO05D004678 4.7e-26 122.1 101 55.4
ATR0796G004 Amborella trichopoda HOM05D004153 ORTHO05D004678 6.1e-26 121.7 155 37.4
Sed0010104 Sechium edule HOM05D004153 ORTHO05D004678 1.0e-25 120.9 165 40.6
A05p00190 Brassica napus HOM05D004153 ORTHO05D004678 1.4e-25 120.6 158 46.8
Actinidia24837 Actinidia chinensis HOM05D004153 ORTHO05D004678 1.8e-25 120.2 124 48.4
MELO3C016017.2 Cucumis melo HOM05D004153 ORTHO05D004678 2.3e-25 119.8 164 40.9
Medtr2g436790 Medicago truncatula HOM05D004153 ORTHO05D004678 4.0e-25 119.0 157 41.4
CDE02G0764 Ceratophyllum demersum HOM05D004153 ORTHO05D004678 1.7e-23 113.6 128 45.3
CsaV3_7G029110 Cucumis sativus L. HOM05D004153 ORTHO05D004678 3.7e-23 112.5 122 45.9
SEGI_18828 Sequoiadendron giganteum HOM05D004153 ORTHO05D004678 3.8e-20 102.4 156 39.1
AagrBONN_evm.TU.Sc2ySwM_362.296 Anthoceros agrestis HOM05D004153 ORTHO05D004678 8.6e-20 101.3 148 36.5
Sabra10G0013900 Salix brachista HOM05D004153 ORTHO05D004678 1.9e-19 100.1 119 50.4
Ca_01937_v3 Cicer arietinum L. HOM05D000639 ORTHO05D004019 6.1e-18 95.1 99 47.5
Os05g0151200 Oryza sativa ssp. japonica HOM05D004153 ORTHO05D004678 8.0e-18 94.7 164 36.0
Dinv19716 Davidia involucrata HOM05D004153 ORTHO05D004678 1.0e-17 94.4 163 41.1
BcaB02g08747 Brassica carinata HOM05D004153 ORTHO05D004678 1.8e-17 93.6 158 39.2
Mapoly0050s0023 Marchantia polymorpha HOM05D004153 ORTHO05D004678 1.8e-17 93.6 153 38.6
Pp3c24_14170 Physcomitrium patens HOM05D004153 ORTHO05D004678 8.9e-17 91.3 156 39.7
CBR_g30074 Chara braunii HOM05D004153 ORTHO05D004678 1.5e-16 90.5 147 35.4
Zm00001eb354150 Zea mays HOM05D004153 ORTHO05D004678 5.7e-16 88.6 103 44.7
Actinidia21057 Actinidia chinensis HOM05D004153 ORTHO05D004678 3.7e-15 85.9 94 51.1
SMO115G0169 Selaginella moellendorffii HOM05D004153 ORTHO05D004678 1.6e-13 80.5 134 34.3
ECA248G0131 Erigeron canadensis HOM05D004153 ORTHO05D004678 4.5e-13 79.0 72 52.8
Pp3c4_22190 Physcomitrium patens HOM05D004153 ORTHO05D004678 5.6e-11 72.0 143 30.8
Pp3c10_6760 Physcomitrium patens HOM05D004153 ORTHO05D004678 7.3e-11 71.6 149 30.9
Mapoly0003s0268 Marchantia polymorpha HOM05D004153 ORTHO05D004678 9.5e-11 71.2 148 31.1
AagrBONN_evm.TU.Sc2ySwM_117.3397 Anthoceros agrestis HOM05D004153 ORTHO05D004678 1.6e-10 70.5 136 32.4
SMO144G0096 Selaginella moellendorffii HOM05D004153 ORTHO05D004678 2.1e-10 70.1 144 30.6
Pp3c26_2060 Physcomitrium patens HOM05D004153 ORTHO05D004678 6.1e-10 68.6 145 31.0
Pp3c2_17540 Physcomitrium patens HOM05D004153 ORTHO05D004678 1.4e-09 67.4 149 28.9
Rhsim07G0194500 Rhododendron simsii HOM05D035787 ORTHO05D004678 1.4e-09 67.4 152 31.6
BcaB01g03159 Brassica carinata HOM05D004153 ORTHO05D004678 3.7e-07 59.3 151 29.8
Rhsim07G0178900 Rhododendron simsii HOM05D035787 ORTHO05D004678 6.4e-07 58.5 165 29.7
RhsimUnG0080000 Rhododendron simsii HOM05D035787 ORTHO05D004678 6.4e-07 58.5 165 29.7
SMO340G0010 Selaginella moellendorffii HOM05D004153 ORTHO05D004678 4.1e-06 55.8 117 28.2


User provided reference genes

Program Settings