Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A979T84 Lonicera japonica HOM05D004547 ORTHO05D005133 0.0e+00 1587.4 836 100.0
Dinv28576 Davidia involucrata HOM05D004547 ORTHO05D005133 0.0e+00 1359.4 839 84.3
CSS0028755 Camellia sinensis var. sinensis HOM05D004547 ORTHO05D005133 0.0e+00 1358.2 837 83.6
Hma1.2p1_0432F.1_g151760 Hydrangea macrophylla HOM05D004547 ORTHO05D005133 0.0e+00 1331.2 840 82.5
QL09p005748 Quercus lobata HOM05D004547 ORTHO05D005133 0.0e+00 1324.7 838 82.5
GSVIVG01018659001 Vitis vinifera HOM05D004547 ORTHO05D005133 0.0e+00 1324.7 838 82.1
Ciclev10004313m.g Citrus clementina HOM05D004547 ORTHO05D005133 0.0e+00 1319.3 837 81.5
Manes.06G134600 Manihot esculenta HOM05D004547 ORTHO05D005133 0.0e+00 1314.7 837 82.4
Duzib205G1908 Durio zibethinus HOM05D004547 ORTHO05D005133 0.0e+00 1313.5 837 81.1
CiPaw.03G093300 Carya illinoinensis HOM05D004547 ORTHO05D005133 0.0e+00 1312.0 839 81.0
Thecc.03G155600 Theobroma cacao HOM05D004547 ORTHO05D005133 0.0e+00 1310.8 837 81.2
Actinidia31780 Actinidia chinensis HOM05D004547 ORTHO05D005133 0.0e+00 1308.5 839 80.8
Cc02_g04280 Coffea canephora HOM05D004547 ORTHO05D005133 0.0e+00 1305.0 845 80.6
Prupe.2G277000 Prunus persica HOM05D004547 ORTHO05D005133 0.0e+00 1303.1 840 79.8
TAR375G0699 Trochodendron aralioides HOM05D004547 ORTHO05D005133 0.0e+00 1302.7 839 81.0
Atru.chr1.728 Acer truncatum HOM05D004547 ORTHO05D005133 0.0e+00 1300.8 837 80.4
Cpa.g.sc3.324 Carica papaya HOM05D004547 ORTHO05D005133 0.0e+00 1295.4 840 80.4
Eucgr.A02893 Eucalyptus grandis HOM05D004547 ORTHO05D005133 0.0e+00 1295.4 838 80.2
Gorai.008G216000 Gossypium raimondii HOM05D004547 ORTHO05D005133 0.0e+00 1291.9 837 80.4
RcHm_v2.0_Chr1g0374281 Rosa chinensis HOM05D004547 ORTHO05D005133 0.0e+00 1288.9 840 79.5
PGR042G2008 Punica granatum HOM05D004547 ORTHO05D005133 0.0e+00 1286.9 837 79.3
Gohir.A12G198300 Gossypium hirsutum HOM05D004547 ORTHO05D005133 0.0e+00 1286.2 837 79.7
Gohir.D12G200900 Gossypium hirsutum HOM05D004547 ORTHO05D005133 0.0e+00 1283.9 837 79.8
FvH4_7g27490 Fragaria vesca HOM05D004547 ORTHO05D005133 0.0e+00 1283.5 840 79.4
Cfa008167 Carpinus fangiana HOM05D004547 ORTHO05D005133 0.0e+00 1283.1 839 80.0
FAN03G1184 Fragaria x ananassa HOM05D004547 ORTHO05D005133 0.0e+00 1282.3 840 79.3
Oeu022486.1 Olea europaea HOM05D004547 ORTHO05D005133 0.0e+00 1280.4 839 79.4
Potri.003G109100 Populus trichocarpa HOM05D004547 ORTHO05D005133 0.0e+00 1278.8 836 79.5
Rhsim03G0167200 Rhododendron simsii HOM05D004547 ORTHO05D005133 0.0e+00 1276.9 840 80.0
FAN01G0567 Fragaria x ananassa HOM05D004547 ORTHO05D005133 0.0e+00 1275.4 840 78.9
CANSAT56G3837 Cannabis sativa HOM05D004547 ORTHO05D005133 0.0e+00 1274.6 838 79.1
Migut.F00479 Erythranthe guttata HOM05D004547 ORTHO05D005133 0.0e+00 1272.7 839 79.0
PGSC0003DMG400017618 Solanum tuberosum HOM05D004547 ORTHO05D005133 0.0e+00 1270.4 837 78.5
HanXRQChr16g0512771 Helianthus annuus HOM05D004547 ORTHO05D005133 0.0e+00 1265.0 838 79.2
FAN06G1879 Fragaria x ananassa HOM05D004547 ORTHO05D005133 0.0e+00 1262.7 860 77.1
Glyma.09G224000 Glycine max HOM05D004547 ORTHO05D005133 0.0e+00 1260.0 839 79.3
Lj3g0004511 Lotus japonicus HOM05D004547 ORTHO05D005133 0.0e+00 1257.3 837 79.3
Glyma.12G013000 Glycine max HOM05D004547 ORTHO05D005133 0.0e+00 1255.4 839 78.9
Sopen05g002910 Solanum pennellii HOM05D004547 ORTHO05D005133 0.0e+00 1255.4 837 77.7
DCAR_020189 Daucus carota HOM05D004547 ORTHO05D005133 0.0e+00 1253.8 838 78.8
Lsat_1_v5_gn_9_52061 Lactuca sativa HOM05D004547 ORTHO05D005133 0.0e+00 1252.3 837 78.3
Peaxi162Scf00023g01214 Petunia axillaris HOM05D004547 ORTHO05D005133 0.0e+00 1250.7 841 78.1
SalBow5G5604 Salvia bowleyana HOM05D004547 ORTHO05D005133 0.0e+00 1248.8 856 77.1
SalBow5G1900 Salvia bowleyana HOM05D004547 ORTHO05D005133 0.0e+00 1248.0 856 77.1
ECA232G2122 Erigeron canadensis HOM05D004547 ORTHO05D005133 0.0e+00 1247.6 839 77.9
arahy.Tifrunner.gnm1.ann1.TL2CDN Arachis hypogaea HOM05D004547 ORTHO05D005133 0.0e+00 1246.1 839 78.7
Ca_19628_v3 Cicer arietinum L. HOM05D004547 ORTHO05D005133 0.0e+00 1243.8 839 79.0
arahy.Tifrunner.gnm1.ann1.J7T2TK Arachis hypogaea HOM05D004547 ORTHO05D005133 0.0e+00 1242.6 839 78.5
Sed0001089 Sechium edule HOM05D004547 ORTHO05D005133 0.0e+00 1242.6 839 77.1
THA.LOC104811522 Tarenaya hassleriana HOM05D004547 ORTHO05D005133 0.0e+00 1242.3 840 76.7
Aqoxy2G03231 Aquilegia oxysepala HOM05D004547 ORTHO05D005133 0.0e+00 1241.1 840 76.9
Medtr0004s0490 Medicago truncatula HOM05D004547 ORTHO05D005133 0.0e+00 1241.1 837 77.8
Nn1g01023 Nelumbo nucifera HOM05D004547 ORTHO05D005133 0.0e+00 1238.4 839 77.1
CsaV3_3G016130 Cucumis sativus L. HOM05D004547 ORTHO05D005133 0.0e+00 1236.1 839 77.4
MELO3C006811.2 Cucumis melo HOM05D004547 ORTHO05D005133 0.0e+00 1234.9 839 77.5
MSTRG.8826 Avicennia marina HOM05D004547 ORTHO05D005133 0.0e+00 1233.0 839 76.8
Lalb_Chr03g0024271 Lupinus albus HOM05D004547 ORTHO05D005133 0.0e+00 1233.0 837 78.1
Carub.0008s1145 Capsella rubella HOM05D004547 ORTHO05D005133 0.0e+00 1232.6 840 76.4
VMungo1127G1242 Vigna mungo HOM05D004547 ORTHO05D005133 0.0e+00 1231.5 837 77.8
Phvul.011G016000 Phaseolus vulgaris HOM05D004547 ORTHO05D005133 0.0e+00 1230.7 839 77.5
Sabra03G0075600 Salix brachista HOM05D004547 ORTHO05D005133 0.0e+00 1230.7 929 71.4
CARHR264160 Cardamine hirsuta HOM05D004547 ORTHO05D005133 0.0e+00 1229.5 840 76.3
Nitab4.5_0004665g0060 Nicotiana tabacum HOM05D004547 ORTHO05D005133 0.0e+00 1229.5 838 76.8
Sc14g0005530 Simmondsia chinensis HOM05D004547 ORTHO05D005133 0.0e+00 1229.5 837 77.4
AT5G51430 Arabidopsis thaliana HOM05D004547 ORTHO05D005133 0.0e+00 1227.6 840 76.1
AL8G25720 Arabidopsis lyrata HOM05D004547 ORTHO05D005133 0.0e+00 1227.2 840 76.1
Sp6g13590 Schrenkiella parvula HOM05D004547 ORTHO05D005133 0.0e+00 1226.5 840 76.0
TWI39G0203 Tripterygium wilfordii HOM05D004547 ORTHO05D005133 0.0e+00 1226.5 837 77.5
EL10Ac2g04890 Beta vulgaris HOM05D004547 ORTHO05D005133 0.0e+00 1225.3 840 76.4
Sed0008837 Sechium edule HOM05D004547 ORTHO05D005133 0.0e+00 1224.9 839 76.8
BcaB08g35501 Brassica carinata HOM05D004547 ORTHO05D005133 0.0e+00 1223.8 840 75.5
Aa31sc202G10 Aethionema arabicum HOM05D004547 ORTHO05D005133 0.0e+00 1221.5 838 75.3
CAN.G16.15 Capsicum annuum HOM05D004547 ORTHO05D005133 0.0e+00 1221.1 837 75.9
ClCG05G007360 Citrullus lanatus HOM05D004547 ORTHO05D005133 0.0e+00 1215.7 833 77.1
BraA10t43010Z Brassica rapa HOM05D004547 ORTHO05D005133 0.0e+00 1212.2 841 75.7
Thhalv10012691m.g Eutrema salsugineum HOM05D004547 ORTHO05D005133 0.0e+00 1212.2 840 75.5
BcaC04g20676 Brassica carinata HOM05D004547 ORTHO05D005133 0.0e+00 1208.0 840 75.0
A10p09340 Brassica napus HOM05D004547 ORTHO05D005133 0.0e+00 1206.8 841 75.6
PSO266G0090 Papaver somniferum HOM05D004547 ORTHO05D005133 0.0e+00 1206.0 852 75.7
A02p12350 Brassica napus HOM05D004547 ORTHO05D005133 0.0e+00 1205.3 839 75.1
C02p20480 Brassica napus HOM05D004547 ORTHO05D005133 0.0e+00 1204.9 839 74.6
BolC9t56951H Brassica oleracea HOM05D004547 ORTHO05D005133 0.0e+00 1203.7 841 74.9
C09p40720 Brassica napus HOM05D004547 ORTHO05D005133 0.0e+00 1203.3 841 74.9
PSO384G4058 Papaver somniferum HOM05D004547 ORTHO05D005133 0.0e+00 1201.4 852 75.7
Medtr6g005610 Medicago truncatula HOM05D004547 ORTHO05D005133 0.0e+00 1199.5 837 75.9
SGA_v2.0_scaffold44G16547 Striga asiatica HOM05D004547 ORTHO05D005133 0.0e+00 1181.0 998 65.7
Ah.10g036230 Amaranthus hybridus HOM05D004547 ORTHO05D005133 0.0e+00 1173.7 837 73.0
Hund13892 Selenicereus undatus HOM05D004547 ORTHO05D005133 0.0e+00 1158.7 808 75.2
TAR374G0871 Trochodendron aralioides HOM05D004547 ORTHO05D005133 0.0e+00 1158.7 744 80.4
ATR0317G078 Amborella trichopoda HOM05D004547 ORTHO05D005133 0.0e+00 1151.3 841 70.6
vmacro06799 Vaccinium macrocarpon HOM05D004547 ORTHO05D005133 0.0e+00 1149.0 860 73.4
AUR62022938 Chenopodium quinoa HOM05D004547 ORTHO05D005133 0.0e+00 1145.2 854 71.3
MD01G1182800 Malus domestica HOM05D004547 ORTHO05D005133 0.0e+00 1141.7 724 81.1
TPR.G20262 Trifolium pratense HOM05D004547 ORTHO05D005133 0.0e+00 1140.6 839 73.5
AUR62012299 Chenopodium quinoa HOM05D004547 ORTHO05D005133 0.0e+00 1135.2 836 72.1
unitig_37.g11930 Utricularia gibba HOM05D004547 ORTHO05D005133 0.0e+00 1115.1 840 69.6
Medtr6g005670 Medicago truncatula HOM05D004547 ORTHO05D005133 2.4e-300 1035.4 834 68.9
Psat0s2825g0040 Pisum sativum HOM05D004547 ORTHO05D005133 2.2e-298 1028.9 682 79.2
Zm00001eb389950 Zea mays HOM05D004547 ORTHO05D005133 1.1e-289 1000.0 720 71.7
Mapoly0007s0274 Marchantia polymorpha HOM05D004547 ORTHO05D005133 4.1e-252 875.2 856 54.6
Pp3c7_60 Physcomitrium patens HOM05D004547 ORTHO05D005133 3.3e-249 865.5 859 54.8
Hma1.2p1_0432F.1_g151750 Hydrangea macrophylla HOM05D004547 ORTHO05D005133 1.2e-238 830.5 522 82.4
Nitab4.5_0000895g0220 Nicotiana tabacum HOM05D004547 ORTHO05D005133 1.8e-231 806.6 543 76.2
SMO134G0015 Selaginella moellendorffii HOM05D004547 ORTHO05D005133 2.6e-230 802.7 835 52.1
BcaC03g14608 Brassica carinata HOM05D004547 ORTHO05D005133 3.5e-227 792.3 544 74.8
CARHR150020 Cardamine hirsuta HOM05D004547 ORTHO05D005133 6.8e-223 778.1 609 67.2
AagrBONN_evm.TU.Sc2ySwM_117.1032 Anthoceros agrestis HOM05D004547 ORTHO05D005133 3.2e-220 769.2 747 56.1
HPP92_005319 Vanilla planifolia HOM05D004547 ORTHO05D005133 1.0e-210 737.6 616 65.1
FAN06G1216 Fragaria x ananassa HOM05D004547 ORTHO05D005133 9.0e-199 698.0 512 72.5
CBR_g31542 Chara braunii HOM05D004547 ORTHO05D005133 9.3e-196 688.0 900 45.3
COL.COLO4_14121 Corchorus olitorius HOM05D004547 ORTHO05D005133 9.3e-196 688.0 426 84.3
MD07G1253600 Malus domestica HOM05D004547 ORTHO05D005133 1.2e-190 671.0 447 79.4
CDE04G0004 Ceratophyllum demersum HOM05D004547 ORTHO05D005133 7.7e-182 641.7 563 63.1
Solyc05g006950.4 Solanum lycopersicum HOM05D004547 ORTHO05D005133 4.5e-158 562.8 395 73.7
FAN10G1756 Fragaria x ananassa HOM05D004547 ORTHO05D005133 3.2e-156 556.6 440 68.0
COL.COLO4_14122 Corchorus olitorius HOM05D004547 ORTHO05D005133 5.2e-146 522.7 343 77.6
HPP92_005328 Vanilla planifolia HOM05D004547 ORTHO05D005133 2.8e-144 516.9 448 64.7
CDE04G0650 Ceratophyllum demersum HOM05D004547 ORTHO05D005133 1.1e-124 451.8 373 66.8
Oeu042559.1 Olea europaea HOM05D004547 ORTHO05D005133 7.1e-119 432.6 428 58.6
SHI14003 Sapria himalayana HOM05D004547 ORTHO05D000023 2.4e-111 407.5 341 64.2
BraA02t06300Z Brassica rapa HOM05D004547 ORTHO05D005133 3.2e-111 407.1 293 74.4
A10p09160 Brassica napus HOM05D004547 ORTHO05D005133 1.2e-105 388.7 233 82.4
BolC2t08183H Brassica oleracea HOM05D004547 ORTHO05D005133 1.7e-104 384.8 233 81.5
Nitab4.5_0019601g0010 Nicotiana tabacum HOM05D004547 ORTHO05D005133 3.3e-100 370.5 263 75.7
PRCOL_00005609 Prasinoderma coloniale HOM05D004547 ORTHO05D005133 2.6e-97 360.9 861 31.1
SEGI_24302 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 7.1e-79 299.7 210 70.0
Cre02.g086700 Chlamydomonas reinhardtii HOM05D004547 ORTHO05D005133 6.9e-74 283.1 864 28.4
SEGI_05738 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 1.3e-67 262.3 230 63.5
SEGI_08321 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 1.4e-61 242.3 212 62.7
HPP92_005318 Vanilla planifolia HOM05D004547 ORTHO05D005133 9.7e-60 236.1 288 47.9
CDE04G2539 Ceratophyllum demersum HOM05D004547 ORTHO05D005133 4.1e-58 230.7 269 51.7
Os06g0669600 Oryza sativa ssp. japonica HOM05D004547 ORTHO05D005133 2.1e-54 218.4 181 65.2
QL10p003704 Quercus lobata HOM05D004547 ORTHO05D005133 2.4e-50 204.9 210 60.5
Actinidia24695 Actinidia chinensis HOM05D004547 ORTHO05D005133 1.0e-48 199.5 130 75.4
A10p09220 Brassica napus HOM05D004547 ORTHO05D005133 1.1e-47 196.1 121 76.9
TPR.G196 Trifolium pratense HOM05D004547 ORTHO05D005133 5.7e-44 183.7 128 75.8
BraA10t43007Z Brassica rapa HOM05D004547 ORTHO05D005133 1.0e-40 172.9 103 82.5
BraA10t42999Z Brassica rapa HOM05D004547 ORTHO05D005133 6.5e-40 170.2 103 81.6
MD07G1253700 Malus domestica HOM05D004547 ORTHO05D005133 2.5e-39 168.3 105 84.8
BraA10t43002Z Brassica rapa HOM05D004547 ORTHO05D005133 3.0e-37 161.4 95 77.9
A10p09300 Brassica napus HOM05D004547 ORTHO05D005133 4.0e-37 161.0 95 80.0
TAR082G0001 Trochodendron aralioides HOM05D004547 ORTHO05D005133 2.6e-36 158.3 97 82.5
CAN.G74.49 Capsicum annuum HOM05D004547 ORTHO05D005133 3.1e-34 151.4 231 43.3
Sc14g0005510 Simmondsia chinensis HOM05D004547 ORTHO05D005133 1.3e-32 146.0 95 78.9
Psat7g163200 Pisum sativum HOM05D004547 ORTHO05D005133 3.0e-29 134.8 139 53.2
SEGI_13446 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 1.2e-28 132.9 95 72.6
Actinidia01052 Actinidia chinensis HOM05D004547 ORTHO05D005133 1.7e-27 129.0 95 70.5
Nitab4.5_0004558g0010 Nicotiana tabacum HOM05D004547 ORTHO05D016189 4.9e-27 127.5 214 40.7
CAN.G903.1 Capsicum annuum HOM05D004547 ORTHO05D005133 1.1e-26 126.3 234 38.9
CAN.G280.11 Capsicum annuum HOM05D004547 ORTHO05D005133 3.5e-25 121.3 214 40.7
GSVIVG01036042001 Vitis vinifera HOM05D004547 ORTHO05D005133 7.8e-25 120.2 140 50.0
CAN.G689.6 Capsicum annuum HOM05D004547 ORTHO05D005133 9.5e-23 113.2 82 74.4
FvH4_7g19100 Fragaria vesca HOM05D004547 ORTHO05D005133 2.6e-20 105.1 87 69.0
SEGI_29591 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 1.4e-18 99.4 94 53.2
Duzib147G0620 Durio zibethinus HOM05D004547 ORTHO05D005133 5.9e-17 94.0 70 68.6
FAN06G3837 Fragaria x ananassa HOM05D004547 ORTHO05D005133 5.2e-13 80.9 72 62.5
CAN.G118.7 Capsicum annuum HOM05D004547 ORTHO05D005133 1.2e-12 79.7 61 67.2
Haze_23095 Corylus avellana HOM05D001506 ORTHO05D000455 1.2e-12 79.7 132 43.9
Nitab4.5_0011021g0010 Nicotiana tabacum HOM05D001522 ORTHO05D016189 4.4e-12 77.8 147 36.7
CAN.G689.5 Capsicum annuum HOM05D004547 ORTHO05D005133 1.0e-08 66.6 61 59.0
Pp3c11_26770 Physcomitrium patens HOM05D004547 ORTHO05D005133 1.7e-08 65.9 64 53.1
Nitab4.5_0008254g0010 Nicotiana tabacum HOM05D017975 ORTHO05D016189 3.9e-08 64.7 164 32.9


User provided reference genes

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