Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A974G32 Lonicera japonica HOM05D003010 ORTHO05D003623 6.6e-82 307.4 161 100.0
Cc02_g04820 Coffea canephora HOM05D003010 ORTHO05D003623 1.3e-29 133.7 153 54.2
Peaxi162Scf00167g01022 Petunia axillaris HOM05D003010 ORTHO05D003623 1.1e-28 130.6 166 48.2
Nitab4.5_0002211g0010 Nicotiana tabacum HOM05D003010 ORTHO05D003623 4.2e-28 128.6 157 50.3
Actinidia31768 Actinidia chinensis HOM05D003010 ORTHO05D003623 1.2e-27 127.1 161 49.7
Nitab4.5_0002236g0070 Nicotiana tabacum HOM05D003010 ORTHO05D003623 6.1e-27 124.8 157 49.0
Actinidia01040 Actinidia chinensis HOM05D000255 ORTHO05D000935 1.0e-26 124.0 134 56.7
Atru.chr1.925 Acer truncatum HOM05D003010 ORTHO05D003623 1.9e-25 119.8 165 42.4
Rhsim09G0189200 Rhododendron simsii HOM05D003010 ORTHO05D003623 7.4e-25 117.9 136 52.2
Solyc05g052080.1 Solanum lycopersicum HOM05D003010 ORTHO05D003623 9.7e-25 117.5 128 56.2
AT5G07490 Arabidopsis thaliana HOM05D003010 ORTHO05D003623 8.2e-24 114.4 156 47.4
Dinv16875 Davidia involucrata HOM05D003010 ORTHO05D003623 2.4e-23 112.8 102 62.7
Thecc.03G147400 Theobroma cacao HOM05D003010 ORTHO05D003623 2.4e-23 112.8 157 47.1
AL6G17794 Arabidopsis lyrata HOM05D003010 ORTHO05D003623 3.1e-23 112.5 156 45.5
CiPaw.07G184100 Carya illinoinensis HOM05D003010 ORTHO05D003623 1.5e-22 110.2 165 47.9
A03p03330 Brassica napus HOM05D003010 ORTHO05D003623 2.0e-22 109.8 153 47.7
BraA03t09685Z Brassica rapa HOM05D003010 ORTHO05D003623 2.0e-22 109.8 153 47.7
vmacro09926 Vaccinium macrocarpon HOM05D003010 ORTHO05D003623 2.0e-22 109.8 136 53.7
Gohir.D09G249800 Gossypium hirsutum HOM05D003010 ORTHO05D003623 3.4e-22 109.0 125 48.0
Gorai.006G274200 Gossypium raimondii HOM05D003010 ORTHO05D003623 3.4e-22 109.0 125 48.0
MD07G1247700 Malus domestica HOM05D003010 ORTHO05D003623 3.4e-22 109.0 155 50.3
Medtr1g090200 Medicago truncatula HOM05D003010 ORTHO05D003623 3.4e-22 109.0 135 51.9
BcaB01g05694 Brassica carinata HOM05D003010 ORTHO05D003623 7.7e-22 107.8 153 47.7
BcaB01g06045 Brassica carinata HOM05D003010 ORTHO05D003623 1.0e-21 107.5 153 47.7
A03p47240 Brassica napus HOM05D003010 ORTHO05D003623 1.0e-21 107.5 163 46.0
BolC3t12913H Brassica oleracea HOM05D003010 ORTHO05D003623 1.0e-21 107.5 153 47.7
BraA03t13851Z Brassica rapa HOM05D003010 ORTHO05D003623 1.0e-21 107.5 163 46.0
Migut.F00533 Erythranthe guttata HOM05D003010 ORTHO05D003623 1.3e-21 107.1 121 53.7
BcaC06g33143 Brassica carinata HOM05D003010 ORTHO05D003623 1.7e-21 106.7 155 47.1
BcaB01g05695 Brassica carinata HOM05D003010 ORTHO05D003623 2.2e-21 106.3 125 52.0
BcaC06g33261 Brassica carinata HOM05D003010 ORTHO05D003623 2.2e-21 106.3 155 47.1
C07p45350 Brassica napus HOM05D003010 ORTHO05D003623 2.2e-21 106.3 155 47.1
BolC7t45056H Brassica oleracea HOM05D003010 ORTHO05D003623 2.2e-21 106.3 155 47.1
Duzib205G1260 Durio zibethinus HOM05D003010 ORTHO05D003623 2.9e-21 105.9 156 45.5
C03p03770 Brassica napus HOM05D003010 ORTHO05D003623 3.8e-21 105.5 151 45.0
CARHR205640 Cardamine hirsuta HOM05D003010 ORTHO05D003623 5.0e-21 105.1 125 49.6
ClCG07G017110 Citrullus lanatus HOM05D003010 ORTHO05D003623 6.5e-21 104.8 126 50.0
COL.COLO4_37328 Corchorus olitorius HOM05D000255 ORTHO05D000935 8.5e-21 104.4 129 48.8
Sp6g35370 Schrenkiella parvula HOM05D003010 ORTHO05D003623 8.5e-21 104.4 137 48.2
AL8G38370 Arabidopsis lyrata HOM05D003010 ORTHO05D003623 1.1e-20 104.0 155 46.5
AT5G61630 Arabidopsis thaliana HOM05D003010 ORTHO05D003623 1.1e-20 104.0 155 46.5
Lj5g0011838 Lotus japonicus HOM05D003010 ORTHO05D003623 1.1e-20 104.0 153 43.8
Prupe.2G271700 Prunus persica HOM05D003010 ORTHO05D003623 1.4e-20 103.6 142 47.9
Gohir.A09G248900 Gossypium hirsutum HOM05D003010 ORTHO05D003623 1.9e-20 103.2 123 48.0
SGA_v2.0_scaffold60G20833 Striga asiatica HOM05D003010 ORTHO05D003623 1.9e-20 103.2 121 53.7
DCAR_020169 Daucus carota HOM05D003010 ORTHO05D003623 2.5e-20 102.8 106 52.8
Hma1.2p1_1014F.1_g248010 Hydrangea macrophylla HOM05D003010 ORTHO05D003623 2.5e-20 102.8 95 63.2
Hma1.2p1_1305F.1_g274559 Hydrangea macrophylla HOM05D003010 ORTHO05D003623 2.5e-20 102.8 95 63.2
SalBow3G0012 Salvia bowleyana HOM05D003010 ORTHO05D003623 3.2e-20 102.4 122 51.6
SalBow3G1605 Salvia bowleyana HOM05D003010 ORTHO05D003623 3.2e-20 102.4 122 51.6
FvH4_7g26830 Fragaria vesca HOM05D003010 ORTHO05D003623 4.2e-20 102.1 141 46.8
Thhalv10005478m.g Eutrema salsugineum HOM05D003010 ORTHO05D003623 7.2e-20 101.3 143 46.2
Thhalv10015492m.g Eutrema salsugineum HOM05D003010 ORTHO05D003623 7.2e-20 101.3 137 46.7
FAN03G0814 Fragaria x ananassa HOM05D000255 ORTHO05D003623 7.2e-20 101.3 141 46.8
PGR042G0835 Punica granatum HOM05D003010 ORTHO05D003623 7.2e-20 101.3 133 53.4
Carub.0008s2233 Capsella rubella HOM05D003010 ORTHO05D003623 9.4e-20 100.9 143 44.8
Ca_10413_v3 Cicer arietinum L. HOM05D003010 ORTHO05D000523 9.4e-20 100.9 141 44.0
Lj8C48T14 Lonicera japonica HOM05D003010 ORTHO05D003623 1.6e-19 100.1 91 59.3
TAR629G3508 Trochodendron aralioides HOM05D003010 ORTHO05D003623 1.6e-19 100.1 134 51.5
TAR636G0256 Trochodendron aralioides HOM05D003010 ORTHO05D003623 1.6e-19 100.1 129 49.6
Cfa013595 Carpinus fangiana HOM05D000255 ORTHO05D000935 2.1e-19 99.8 125 52.0
ECA238G2786 Erigeron canadensis HOM05D003010 ORTHO05D003623 2.1e-19 99.8 117 47.0
BcaC03g18078 Brassica carinata HOM05D003010 ORTHO05D003623 2.7e-19 99.4 155 43.2
A02p41560 Brassica napus HOM05D003010 ORTHO05D003623 2.7e-19 99.4 155 43.2
C02p61500 Brassica napus HOM05D003010 ORTHO05D003623 2.7e-19 99.4 155 43.2
BolC2t12200H Brassica oleracea HOM05D003010 ORTHO05D003623 2.7e-19 99.4 155 43.2
BraA02t09098Z Brassica rapa HOM05D003010 ORTHO05D003623 2.7e-19 99.4 155 43.2
CARHR275430 Cardamine hirsuta HOM05D003010 ORTHO05D003623 2.7e-19 99.4 144 47.9
Haze_22213 Corylus avellana HOM05D000255 ORTHO05D000935 2.7e-19 99.4 134 49.3
THA.LOC104801625 Tarenaya hassleriana HOM05D003010 ORTHO05D003623 2.7e-19 99.4 125 49.6
FAN06G5032 Fragaria x ananassa HOM05D000255 ORTHO05D000935 3.6e-19 99.0 141 46.1
Sp2g24840 Schrenkiella parvula HOM05D003010 ORTHO05D003623 3.6e-19 99.0 153 43.1
Phvul.007G138100 Phaseolus vulgaris HOM05D003010 ORTHO05D003623 4.7e-19 98.6 124 46.8
Aa31LG3G18910 Aethionema arabicum HOM05D003010 ORTHO05D003623 6.1e-19 98.2 139 47.5
Glyma.10G193700 Glycine max HOM05D003010 ORTHO05D003623 6.1e-19 98.2 124 50.0
Glyma.20G196700 Glycine max HOM05D003010 ORTHO05D003623 7.9e-19 97.8 124 50.0
Lalb_Chr06g0169801 Lupinus albus HOM05D003010 ORTHO05D003623 1.0e-18 97.4 126 49.2
GSVIVG01013867001 Vitis vinifera HOM05D003010 ORTHO05D003623 1.4e-18 97.1 115 50.4
FAN01G3086 Fragaria x ananassa HOM05D003010 ORTHO05D003623 1.8e-18 96.7 141 46.8
Carub.0006s0648 Capsella rubella HOM05D003010 ORTHO05D003623 5.1e-18 95.1 151 44.4
Cpa.g.sc13.241 Carica papaya HOM05D003010 ORTHO05D003623 5.1e-18 95.1 163 44.8
Lsat_1_v5_gn_2_127061 Lactuca sativa HOM05D003010 ORTHO05D003623 5.1e-18 95.1 108 49.1
Nn6g33810 Nelumbo nucifera HOM05D003010 ORTHO05D003623 5.1e-18 95.1 123 46.3
Eucgr.A02926 Eucalyptus grandis HOM05D003010 ORTHO05D003623 6.7e-18 94.7 131 46.6
Potri.001G080500 Populus trichocarpa HOM05D003010 ORTHO05D003623 8.8e-18 94.4 140 45.0
RcHm_v2.0_Chr1g0373521 Rosa chinensis HOM05D003010 ORTHO05D003623 8.8e-18 94.4 139 46.0
arahy.Tifrunner.gnm1.ann1.I909QJ Arachis hypogaea HOM05D003010 ORTHO05D003623 1.1e-17 94.0 126 47.6
QL09p027705 Quercus lobata HOM05D003010 ORTHO05D003623 3.3e-17 92.4 125 46.4
HanXRQChr14g0461131 Helianthus annuus HOM05D003010 ORTHO05D003623 4.4e-17 92.0 113 45.1
CANSAT56G3417 Cannabis sativa HOM05D003010 ORTHO05D003623 7.4e-17 91.3 126 48.4
Sabra01G0057700 Salix brachista HOM05D000255 ORTHO05D000935 1.7e-16 90.1 131 45.0
MELO3C017634.2 Cucumis melo HOM05D003010 ORTHO05D003623 3.7e-16 89.0 118 44.1
FAN10G3636 Fragaria x ananassa HOM05D003010 ORTHO05D003623 3.7e-16 89.0 102 51.0
Sed0025535 Sechium edule HOM05D003010 ORTHO05D003623 4.8e-16 88.6 123 43.1
Sc01g0008150 Simmondsia chinensis HOM05D003010 ORTHO05D003623 4.8e-16 88.6 142 44.4
Sopen05g030630 Solanum pennellii HOM05D003010 ORTHO05D003623 1.1e-15 87.4 83 56.6
TWI39G0461 Tripterygium wilfordii HOM05D003010 ORTHO05D003623 1.1e-15 87.4 132 47.0
Manes.14G039600 Manihot esculenta HOM05D003010 ORTHO05D003623 1.8e-15 86.7 109 49.5
Actinidia25899 Actinidia chinensis HOM05D003010 ORTHO05D003623 2.4e-15 86.3 124 45.2
arahy.Tifrunner.gnm1.ann1.Y5VFEC Arachis hypogaea HOM05D003010 ORTHO05D003623 3.1e-15 85.9 126 46.0
CsaV3_4G004320 Cucumis sativus L. HOM05D003010 ORTHO05D003623 9.1e-15 84.3 126 42.9
GSVIVG01007344001 Vitis vinifera HOM05D003010 ORTHO05D003623 1.2e-14 84.0 123 43.1
Manes.06G130601 Manihot esculenta HOM05D003010 ORTHO05D003623 1.0e-13 80.9 106 48.1
PSO782G2859 Papaver somniferum HOM05D003010 ORTHO05D003623 1.7e-13 80.1 140 36.4
CDE01G0248 Ceratophyllum demersum HOM05D003010 ORTHO05D003623 2.2e-13 79.7 118 42.4
MBI04_g29855_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 2.9e-13 79.3 127 40.9
EL10Ac5g12296 Beta vulgaris HOM05D003010 ORTHO05D003623 6.5e-13 78.2 124 42.7
Sc07g0009120 Simmondsia chinensis HOM05D003010 ORTHO05D003623 5.5e-12 75.1 130 41.5
PSO339G5114 Papaver somniferum HOM05D003010 ORTHO05D010439 7.2e-12 74.7 153 36.6
PSO801G0586 Papaver somniferum HOM05D003010 ORTHO05D003623 9.4e-12 74.3 150 36.7
Hund11331 Selenicereus undatus HOM05D003010 ORTHO05D003623 9.4e-12 74.3 142 40.8
Hund14501 Selenicereus undatus HOM05D003010 ORTHO05D003623 9.4e-12 74.3 124 39.5
HPP92_023172 Vanilla planifolia HOM05D003010 ORTHO05D003623 9.4e-12 74.3 121 40.5
Aqoxy3G02705 Aquilegia oxysepala HOM05D003010 ORTHO05D003623 1.6e-11 73.6 81 48.1
Nitab4.5_0000500g0010 Nicotiana tabacum HOM05D003010 ORTHO05D003623 3.6e-11 72.4 126 38.9
Migut.F01206 Erythranthe guttata HOM05D003010 ORTHO05D003623 4.7e-11 72.0 94 48.9
Solyc08g078060.3 Solanum lycopersicum HOM05D003010 ORTHO05D003623 4.7e-11 72.0 126 38.9
TPR.G13393 Trifolium pratense HOM05D003010 ORTHO05D003623 6.1e-11 71.6 100 45.0
Nitab4.5_0009955g0020 Nicotiana tabacum HOM05D003010 ORTHO05D003623 8.0e-11 71.2 117 41.0
TAR625G0712 Trochodendron aralioides HOM05D003010 ORTHO05D010439 8.0e-11 71.2 128 39.1
VMungo0720G1826 Vigna mungo HOM05D002495 ORTHO05D003623 8.0e-11 71.2 95 42.1
Sopen08g026560 Solanum pennellii HOM05D003010 ORTHO05D003623 1.8e-10 70.1 126 38.1
Ciclev10007152m.g Citrus clementina HOM05D003010 ORTHO05D003623 2.3e-10 69.7 91 48.4
Gohir.D08G184800 Gossypium hirsutum HOM05D003010 ORTHO05D003623 2.3e-10 69.7 91 46.2
Nn8g39368 Nelumbo nucifera HOM05D003010 ORTHO05D010439 2.3e-10 69.7 130 36.9
PGSC0003DMG400026255 Solanum tuberosum HOM05D003010 ORTHO05D003623 2.3e-10 69.7 126 38.1
Gorai.004G194100 Gossypium raimondii HOM05D003010 ORTHO05D003623 3.0e-10 69.3 91 46.2
vmacro00038 Vaccinium macrocarpon HOM05D003010 ORTHO05D003623 3.0e-10 69.3 123 39.8
CAN.G761.23 Capsicum annuum HOM05D003010 ORTHO05D003623 3.9e-10 68.9 107 43.9
Nn1g00825 Nelumbo nucifera HOM05D003010 ORTHO05D003623 3.9e-10 68.9 93 49.5
Thecc.03G243800 Theobroma cacao HOM05D003010 ORTHO05D003623 5.2e-10 68.6 91 46.2
Gohir.A08G165900 Gossypium hirsutum HOM05D003010 ORTHO05D003623 6.7e-10 68.2 91 46.2
Peaxi162Scf00446g00412 Petunia axillaris HOM05D003010 ORTHO05D003623 6.7e-10 68.2 151 39.1
Duzib205G1418 Durio zibethinus HOM05D003010 ORTHO05D003623 8.8e-10 67.8 91 47.3
Ah.12g054120 Amaranthus hybridus HOM05D003010 ORTHO05D003623 2.0e-09 66.6 122 41.8
COL.COLO4_21678 Corchorus olitorius HOM05D003010 ORTHO05D003623 2.0e-09 66.6 94 46.8
PSO063G3783 Papaver somniferum HOM05D003010 ORTHO05D003623 4.4e-09 65.5 108 38.9
Cfa003337 Carpinus fangiana HOM05D003010 ORTHO05D010439 1.3e-08 63.9 95 41.1
Migut.A01045 Erythranthe guttata HOM05D003010 ORTHO05D003623 6.3e-08 61.6 107 38.3
DCAR_009212 Daucus carota HOM05D000639 ORTHO05D005966 1.4e-07 60.5 93 40.9
Dinv28854 Davidia involucrata HOM05D003010 ORTHO05D003623 1.8e-07 60.1 92 40.2
Lj4g0006068 Lotus japonicus HOM05D003010 ORTHO05D010439 4.1e-07 58.9 97 43.3
Lj4g0025656 Lotus japonicus HOM05D003010 ORTHO05D010439 4.1e-07 58.9 97 43.3
Oeu017218.3 Olea europaea HOM05D003010 ORTHO05D003623 4.1e-07 58.9 91 40.7
Atru.chr7.1234 Acer truncatum HOM05D009305 ORTHO05D010439 5.3e-07 58.5 94 42.6
TWI81G0439 Tripterygium wilfordii HOM05D003010 ORTHO05D003623 5.3e-07 58.5 91 42.9
Actinidia02185 Actinidia chinensis HOM05D003010 ORTHO05D003623 7.0e-07 58.2 91 41.8
Ciclev10023073m.g Citrus clementina HOM05D003010 ORTHO05D003623 7.0e-07 58.2 91 39.6
Rhsim01G0078400 Rhododendron simsii HOM05D003010 ORTHO05D010439 7.0e-07 58.2 91 42.9
Haze_25626 Corylus avellana HOM05D003010 ORTHO05D010439 9.1e-07 57.8 92 40.2
MD06G1049300 Malus domestica HOM05D003010 ORTHO05D003623 9.1e-07 57.8 96 40.6
Aqoxy7G02055 Aquilegia oxysepala HOM05D003010 ORTHO05D003623 1.2e-06 57.4 113 33.6
Dinv21689 Davidia involucrata HOM05D003010 ORTHO05D003623 1.2e-06 57.4 91 46.2
BraA08t33266Z Brassica rapa HOM05D003010 ORTHO05D003623 2.0e-06 56.6 102 41.2
CDE04G1477 Ceratophyllum demersum HOM05D003010 ORTHO05D003623 2.0e-06 56.6 114 38.6
Potri.003G081900 Populus trichocarpa HOM05D003010 ORTHO05D003623 2.0e-06 56.6 91 38.5
Cc06_g08930 Coffea canephora HOM05D018231 ORTHO05D010439 2.6e-06 56.2 98 38.8
Rhsim04G0160200 Rhododendron simsii HOM05D003010 ORTHO05D003623 2.6e-06 56.2 95 42.1
Sabra03G0052800 Salix brachista HOM05D003010 ORTHO05D003623 2.6e-06 56.2 91 39.6
BcaC07g38027 Brassica carinata HOM05D001429 ORTHO05D001420 4.5e-06 55.5 102 40.2
A08p12780 Brassica napus HOM05D003010 ORTHO05D003623 4.5e-06 55.5 94 40.4
Cc08_g11590 Coffea canephora HOM05D003010 ORTHO05D003623 5.9e-06 55.1 163 32.5
QL02p087437 Quercus lobata HOM05D009305 ORTHO05D010439 5.9e-06 55.1 89 38.2


User provided reference genes

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