Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A961T78 Lonicera japonica HOM05D004070 ORTHO05D004904 0.0e+00 1511.1 728 100.0
Dinv10587 Davidia involucrata HOM05D004070 ORTHO05D004904 9.3e-309 1063.1 725 69.9
TAR623G0471 Trochodendron aralioides HOM05D004070 ORTHO05D004904 1.8e-288 995.7 730 65.5
vmacro06948 Vaccinium macrocarpon HOM05D004070 ORTHO05D004904 1.8e-280 969.1 735 64.2
Sabra10G0141400 Salix brachista HOM05D004070 ORTHO05D004904 2.9e-278 961.8 723 63.3
Potri.010G184200 Populus trichocarpa HOM05D004070 ORTHO05D004904 2.2e-273 945.7 723 62.2
Lj8A62T48 Lonicera japonica HOM05D004070 ORTHO05D004904 2.8e-273 945.3 670 67.6
DCAR_011846 Daucus carota HOM05D004070 ORTHO05D004904 1.3e-270 936.4 728 62.5
Nitab4.5_0003710g0040 Nicotiana tabacum HOM05D004070 ORTHO05D004904 1.4e-269 932.9 725 60.8
Manes.10G008700 Manihot esculenta HOM05D004070 ORTHO05D004904 9.4e-269 930.2 722 61.1
Prupe.2G256300 Prunus persica HOM05D004070 ORTHO05D004904 7.9e-268 927.2 723 61.7
Peaxi162Scf00284g00526 Petunia axillaris HOM05D004070 ORTHO05D004904 1.0e-267 926.8 722 61.2
Nitab4.5_0000058g0090 Nicotiana tabacum HOM05D004070 ORTHO05D004904 1.4e-267 926.4 725 60.4
Rhsim03G0147100 Rhododendron simsii HOM05D004070 ORTHO05D004904 8.8e-267 923.7 725 61.4
Oeu043174.1 Olea europaea HOM05D004070 ORTHO05D004904 2.8e-265 918.7 754 60.5
MD01G1158000 Malus domestica HOM05D004070 ORTHO05D004904 1.1e-264 916.8 721 60.7
Duzib128G0764 Durio zibethinus HOM05D004070 ORTHO05D004904 2.4e-264 915.6 723 60.2
Sopen06g016660 Solanum pennellii HOM05D004070 ORTHO05D004904 2.4e-264 915.6 727 61.1
Solyc06g050930.3 Solanum lycopersicum HOM05D004070 ORTHO05D004904 3.1e-264 915.2 727 60.8
CAN.G19.7 Capsicum annuum HOM05D004070 ORTHO05D004904 7.0e-264 914.1 726 60.9
RcHm_v2.0_Chr1g0370971 Rosa chinensis HOM05D004070 ORTHO05D004904 2.0e-263 912.5 721 61.3
MD07G1226700 Malus domestica HOM05D004070 ORTHO05D004904 1.1e-261 906.7 720 60.1
ECA238G2061 Erigeron canadensis HOM05D004070 ORTHO05D004904 7.2e-261 904.0 730 60.1
Rhsim03G0146900 Rhododendron simsii HOM05D004070 ORTHO05D004904 7.2e-261 904.0 737 60.4
SalBow3G2100 Salvia bowleyana HOM05D004070 ORTHO05D004904 1.2e-260 903.3 724 60.1
Lsat_1_v5_gn_2_125521 Lactuca sativa HOM05D004070 ORTHO05D004904 1.6e-260 902.9 726 61.0
TWI73G0078 Tripterygium wilfordii HOM05D004070 ORTHO05D004904 2.7e-260 902.1 720 60.0
Migut.F00635 Erythranthe guttata HOM05D004070 ORTHO05D004904 8.0e-260 900.6 731 60.3
SalBow3G0248 Salvia bowleyana HOM05D004070 ORTHO05D004904 2.3e-259 899.0 724 59.9
Aqoxy1G01303 Aquilegia oxysepala HOM05D004070 ORTHO05D004904 1.5e-258 896.3 728 59.2
Thecc.10G010900 Theobroma cacao HOM05D004070 ORTHO05D004904 2.0e-258 896.0 725 60.0
Ciclev10030777m.g Citrus clementina HOM05D004070 ORTHO05D004904 2.6e-258 895.6 724 60.1
QL08p063798 Quercus lobata HOM05D004070 ORTHO05D004904 5.7e-258 894.4 725 59.4
FvH4_7g25120 Fragaria vesca HOM05D004070 ORTHO05D004904 3.7e-257 891.7 718 59.7
MSTRG.8925 Avicennia marina HOM05D004070 ORTHO05D004904 6.3e-257 891.0 726 58.8
Eucgr.J00174 Eucalyptus grandis HOM05D004070 ORTHO05D004904 1.8e-256 889.4 742 58.2
FAN03G3092 Fragaria x ananassa HOM05D004070 ORTHO05D004904 7.7e-255 884.0 731 59.4
Glyma.11G232700 Glycine max HOM05D004070 ORTHO05D004904 3.8e-254 881.7 722 59.7
Gorai.012G079500 Gossypium raimondii HOM05D004070 ORTHO05D004904 5.0e-254 881.3 740 58.0
Glyma.18G024300 Glycine max HOM05D004070 ORTHO05D004904 6.8e-251 870.9 723 58.8
Lj6g0014816 Lotus japonicus HOM05D004070 ORTHO05D004904 6.8e-251 870.9 724 59.5
Atru.chr12.102 Acer truncatum HOM05D004070 ORTHO05D004904 8.8e-251 870.5 703 60.2
CiPaw.02G195800 Carya illinoinensis HOM05D004070 ORTHO05D004904 3.4e-250 868.6 724 58.1
FAN01G1500 Fragaria x ananassa HOM05D004070 ORTHO05D004904 3.4e-250 868.6 742 57.8
GSVIVG01032751001 Vitis vinifera HOM05D004070 ORTHO05D004904 5.7e-250 867.8 640 65.3
Medtr3g071610 Medicago truncatula HOM05D004070 ORTHO05D004904 7.5e-250 867.5 722 58.6
HanXRQChr17g0536301 Helianthus annuus HOM05D004070 ORTHO05D004904 9.8e-250 867.1 726 56.6
Potri.010G184300 Populus trichocarpa HOM05D004070 ORTHO05D004904 1.7e-249 866.3 725 58.6
AUR62022946 Chenopodium quinoa HOM05D004070 ORTHO05D004904 1.4e-248 863.2 723 58.4
CiPaw.12G018900 Carya illinoinensis HOM05D004070 ORTHO05D004904 1.8e-248 862.8 724 57.7
FAN06G4674 Fragaria x ananassa HOM05D004070 ORTHO05D004904 4.1e-248 861.7 758 56.3
PSO765G0033 Papaver somniferum HOM05D004070 ORTHO05D004904 1.2e-247 860.1 727 57.2
Gorai.011G290600 Gossypium raimondii HOM05D004070 ORTHO05D004904 1.6e-247 859.8 724 58.0
Haze_17281 Corylus avellana HOM05D004070 ORTHO05D004904 2.7e-247 859.0 726 58.7
Phvul.001G245900 Phaseolus vulgaris HOM05D004070 ORTHO05D004904 2.7e-247 859.0 725 58.1
Gohir.D10G250200 Gossypium hirsutum HOM05D004070 ORTHO05D004904 7.7e-247 857.4 724 57.9
EL10Ac2g04896 Beta vulgaris HOM05D004070 ORTHO05D004904 1.3e-246 856.7 724 56.9
SGA_v2.0_scaffold60G20962 Striga asiatica HOM05D004070 ORTHO05D004904 1.3e-246 856.7 723 58.2
Lalb_Chr08g0231511 Lupinus albus HOM05D004070 ORTHO05D004904 1.7e-246 856.3 725 57.5
Gohir.A10G238300 Gossypium hirsutum HOM05D004070 ORTHO05D004904 2.2e-246 855.9 724 57.5
PSO349G0044 Papaver somniferum HOM05D004070 ORTHO05D004904 5.0e-246 854.7 727 56.7
Psat5g130680 Pisum sativum HOM05D004070 ORTHO05D004904 9.5e-245 850.5 722 58.3
AUR62012305 Chenopodium quinoa HOM05D004070 ORTHO05D004904 1.2e-244 850.1 723 57.4
TPR.G27736 Trifolium pratense HOM05D004070 ORTHO05D004904 2.3e-243 845.9 722 58.0
VMungo1383G0354 Vigna mungo HOM05D004070 ORTHO05D004904 2.3e-243 845.9 724 57.0
Ca_15154_v3 Cicer arietinum L. HOM05D004070 ORTHO05D004904 2.0e-242 842.8 725 58.3
CANSAT56G1738 Cannabis sativa HOM05D004070 ORTHO05D004904 3.1e-240 835.5 715 56.5
Glyma.14G056600 Glycine max HOM05D004070 ORTHO05D004904 1.2e-239 833.6 722 56.1
Haze_17272 Corylus avellana HOM05D004070 ORTHO05D004904 1.6e-239 833.2 726 57.3
Glyma.14G056500 Glycine max HOM05D004070 ORTHO05D004904 3.5e-239 832.0 725 56.1
PGR044G0681 Punica granatum HOM05D004070 ORTHO05D004904 5.9e-239 831.2 714 55.7
Glyma.02G262300 Glycine max HOM05D004070 ORTHO05D004904 5.6e-237 824.7 723 55.6
Nn2g10988 Nelumbo nucifera HOM05D004070 ORTHO05D004904 6.8e-235 817.8 721 56.4
Migut.F01473 Erythranthe guttata HOM05D004070 ORTHO05D004904 8.9e-235 817.4 733 56.3
Duzib106G0498 Durio zibethinus HOM05D004070 ORTHO05D004904 5.7e-234 814.7 725 55.7
Gohir.A05G332000 Gossypium hirsutum HOM05D004070 ORTHO05D004904 8.3e-233 810.8 685 58.2
VMungo0647G1128 Vigna mungo HOM05D004070 ORTHO05D004904 8.3e-233 810.8 723 54.6
Sed0002479 Sechium edule HOM05D004070 ORTHO05D004904 1.8e-232 809.7 725 54.8
Cc02_g06030 Coffea canephora HOM05D004070 ORTHO05D004904 3.2e-232 808.9 643 61.6
Ciclev10031026m.g Citrus clementina HOM05D004070 ORTHO05D004904 5.9e-231 804.7 667 58.8
Sabra10G0141500 Salix brachista HOM05D004070 ORTHO05D004904 2.3e-227 792.7 888 48.3
ClCG07G004560 Citrullus lanatus HOM05D004070 ORTHO05D004904 7.5e-226 787.7 726 53.4
ATR0174G011 Amborella trichopoda HOM05D004070 ORTHO05D004904 6.4e-225 784.6 732 53.0
CsaV3_5G010510 Cucumis sativus L. HOM05D004070 ORTHO05D004904 6.4e-225 784.6 725 53.5
CSS0045603 Camellia sinensis var. sinensis HOM05D004070 ORTHO05D004904 1.4e-219 766.9 535 67.7
Carub.0006s0436 Capsella rubella HOM05D004070 ORTHO05D004904 1.4e-219 766.9 728 52.2
Thhalv10012879m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 2.3e-219 766.1 727 50.9
AL6G15350 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 3.4e-218 762.3 728 51.8
CARHR207790 Cardamine hirsuta HOM05D004070 ORTHO05D004904 9.8e-218 760.8 730 51.6
Sp6g37380 Schrenkiella parvula HOM05D004070 ORTHO05D004904 2.2e-217 759.6 728 50.7
AT5G05460 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 6.4e-217 758.1 728 51.8
Carub.0003s1033 Capsella rubella HOM05D004070 ORTHO05D004904 1.4e-216 756.9 733 51.2
BcaB01g05761 Brassica carinata HOM05D004070 ORTHO05D004904 1.2e-215 753.8 728 51.2
A03p02310 Brassica napus HOM05D004070 ORTHO05D004904 2.7e-215 752.7 721 52.1
BraA03t09594Z Brassica rapa HOM05D004070 ORTHO05D004904 2.7e-215 752.7 719 52.2
THA.LOC104816686 Tarenaya hassleriana HOM05D004070 ORTHO05D004904 6.0e-215 751.5 735 50.7
Gohir.D04G070700 Gossypium hirsutum HOM05D004070 ORTHO05D004904 7.8e-215 751.1 740 51.9
Sp3g09370 Schrenkiella parvula HOM05D004070 ORTHO05D004904 6.6e-214 748.0 736 50.5
CARHR085620 Cardamine hirsuta HOM05D004070 ORTHO05D004904 1.9e-213 746.5 736 50.5
BcaB01g05950 Brassica carinata HOM05D004070 ORTHO05D004904 2.1e-212 743.0 721 51.5
BolC3t12817H Brassica oleracea HOM05D004070 ORTHO05D004904 2.1e-212 743.0 721 51.5
C03p02630 Brassica napus HOM05D004070 ORTHO05D004904 2.8e-212 742.7 721 51.3
ClCG07G004550 Citrullus lanatus HOM05D004070 ORTHO05D004904 2.8e-212 742.7 721 51.5
Aa31LG3G4060 Aethionema arabicum HOM05D004070 ORTHO05D004904 6.2e-212 741.5 734 51.4
FAN10G1680 Fragaria x ananassa HOM05D004070 ORTHO05D004904 1.8e-211 740.0 720 53.6
CsaV3_5G010500 Cucumis sativus L. HOM05D004070 ORTHO05D004904 4.0e-211 738.8 723 50.6
Thhalv10020200m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 5.2e-211 738.4 735 50.3
Ah.16g103890 Amaranthus hybridus HOM05D004070 ORTHO05D004904 1.5e-210 736.9 719 52.4
PGR142G0892 Punica granatum HOM05D004070 ORTHO05D004904 2.6e-210 736.1 727 53.1
BcaB04g21158 Brassica carinata HOM05D004070 ORTHO05D004904 5.8e-210 734.9 739 50.6
AT3G11040 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 9.9e-210 734.2 736 48.8
BolC1t05338H Brassica oleracea HOM05D004070 ORTHO05D004904 2.4e-208 729.6 753 49.3
AL3G22590 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 2.7e-207 726.1 736 49.2
arahy.Tifrunner.gnm1.ann1.PDR9Z8 Arachis hypogaea HOM05D004070 ORTHO05D004904 1.7e-206 723.4 764 49.6
Aa31LG11G6530 Aethionema arabicum HOM05D004070 ORTHO05D004904 3.9e-206 722.2 726 49.3
arahy.Tifrunner.gnm1.ann1.T4ULTV Arachis hypogaea HOM05D004070 ORTHO05D004904 3.8e-201 705.7 722 51.0
arahy.Tifrunner.gnm1.ann1.DADU25 Arachis hypogaea HOM05D004070 ORTHO05D004904 4.9e-201 705.3 769 48.4
MELO3C018386.2 Cucumis melo HOM05D004070 ORTHO05D004904 1.7e-198 696.8 726 49.4
SEGI_36115 Sequoiadendron giganteum HOM05D004070 ORTHO05D004904 2.3e-198 696.4 774 45.7
arahy.Tifrunner.gnm1.ann1.L3EDXB Arachis hypogaea HOM05D004070 ORTHO05D004904 4.8e-196 688.7 722 50.0
Os05g0346500 Oryza sativa ssp. japonica HOM05D004070 ORTHO05D004904 1.1e-195 687.6 724 48.1
CDE06G0669 Ceratophyllum demersum HOM05D004070 ORTHO05D004904 7.6e-194 681.4 695 50.8
CANSAT56G2024 Cannabis sativa HOM05D004070 ORTHO05D004904 6.4e-193 678.3 724 50.0
BcaC09g48150 Brassica carinata HOM05D004070 ORTHO05D004904 1.4e-192 677.2 731 47.5
Sc11g0005320 Simmondsia chinensis HOM05D004070 ORTHO05D004904 4.6e-191 672.2 536 60.1
Manes.10G008500 Manihot esculenta HOM05D004070 ORTHO05D004904 1.4e-187 660.6 562 57.1
MELO3C018385.2 Cucumis melo HOM05D004070 ORTHO05D004904 3.5e-183 646.0 733 45.8
AL467U10010 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 1.0e-177 627.9 736 44.2
unitig_32.g11775 Utricularia gibba HOM05D004070 ORTHO05D004904 1.3e-174 617.5 722 45.8
HPP92_006774 Vanilla planifolia HOM05D004070 ORTHO05D004904 7.4e-165 585.1 725 44.7
COL.COLO4_25787 Corchorus olitorius HOM05D004070 ORTHO05D004904 6.3e-164 582.0 722 44.7
Zm00001eb347620 Zea mays HOM05D004070 ORTHO05D004904 1.0e-150 538.1 547 50.3
BcaC09g48154 Brassica carinata HOM05D004070 ORTHO05D004904 1.7e-129 467.6 372 59.4
SMO351G0021 Selaginella moellendorffii HOM05D004070 ORTHO05D004904 3.4e-125 453.4 476 46.0
SGA_v2.0_scaffold395G50725 Striga asiatica HOM05D004070 ORTHO05D004904 4.1e-123 446.4 406 53.2
Cpa.g.sc19.130 Carica papaya HOM05D004070 ORTHO05D004904 3.8e-121 439.9 425 51.5
PSO478G2175 Papaver somniferum HOM05D004070 ORTHO05D004904 9.5e-120 435.3 286 68.2
Glyma.02G262251 Glycine max HOM05D004070 ORTHO05D004904 1.3e-113 414.8 407 51.1
Dinv21779 Davidia involucrata HOM05D004070 ORTHO05D004904 3.2e-107 393.7 224 80.4
BraA01t04204Z Brassica rapa HOM05D004070 ORTHO05D004904 1.1e-102 378.6 470 43.8
Pp3c4_19160 Physcomitrium patens HOM05D004070 ORTHO05D004904 5.1e-97 359.8 563 36.9
PGSC0003DMG400023947 Solanum tuberosum HOM05D004070 ORTHO05D004904 1.9e-96 357.8 333 53.2
CBR_g6382 Chara braunii HOM05D004070 ORTHO05D004904 1.9e-91 341.3 455 39.3
Mapoly0073s0082 Marchantia polymorpha HOM05D004070 ORTHO05D004904 1.5e-85 321.6 578 34.4
AagrBONN_evm.TU.Sc2ySwM_362.570 Anthoceros agrestis HOM05D004070 ORTHO05D004904 2.9e-84 317.4 553 33.1
Cre13.g582250 Chlamydomonas reinhardtii HOM05D004070 ORTHO05D004904 6.9e-78 296.2 361 42.4
SGA_v2.0_scaffold395G50724 Striga asiatica HOM05D004070 ORTHO05D004904 3.7e-55 220.7 139 73.4
Cpa.g.sc19.132 Carica papaya HOM05D004070 ORTHO05D004904 1.4e-54 218.8 256 45.7
Glyma.02G262200 Glycine max HOM05D004070 ORTHO05D004904 1.0e-52 212.6 192 55.2
BraA01t04205Z Brassica rapa HOM05D004070 ORTHO05D004904 6.5e-52 209.9 204 52.9
AT3G61010 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 7.4e-48 196.4 398 32.2
Sopen01g021300 Solanum pennellii HOM05D004070 ORTHO05D004904 8.2e-47 193.0 218 45.9
Atru.chr12.101 Acer truncatum HOM05D004070 ORTHO05D004904 1.3e-44 185.7 183 49.7
Dinv21778 Davidia involucrata HOM05D004070 ORTHO05D004904 1.4e-43 182.2 287 40.1
Potri.008G073001 Populus trichocarpa HOM05D004070 ORTHO05D004904 4.2e-43 180.6 260 40.0
MELO3C034437.2 Cucumis melo HOM05D004070 ORTHO05D004904 1.2e-42 179.1 129 60.5
SGA_v2.0_scaffold395G50723 Striga asiatica HOM05D004070 ORTHO05D004904 3.0e-41 174.5 110 67.3
BcaB07g33013 Brassica carinata HOM05D004070 ORTHO05D004904 6.7e-41 173.3 272 39.3
arahy.Tifrunner.gnm1.ann1.0XTL3F Arachis hypogaea HOM05D004070 ORTHO05D004904 2.1e-34 151.8 135 54.1
BcaB04g21152 Brassica carinata HOM05D004070 ORTHO05D004904 2.4e-30 138.3 148 50.0
BcaB04g21155 Brassica carinata HOM05D004070 ORTHO05D004904 2.4e-30 138.3 148 50.0
BcaB04g21156 Brassica carinata HOM05D004070 ORTHO05D004904 2.4e-30 138.3 148 50.0
BraA01t04203Z Brassica rapa HOM05D000053 ORTHO05D000035 2.7e-26 124.8 263 32.3
BolC1t05337H Brassica oleracea HOM05D000053 ORTHO05D000035 2.6e-24 118.2 265 29.4
Potri.008G072901 Populus trichocarpa HOM05D004070 ORTHO05D004904 2.0e-21 108.6 121 45.5
arahy.Tifrunner.gnm1.ann1.JYP4ZT Arachis hypogaea HOM05D004070 ORTHO05D004904 1.9e-19 102.1 147 36.1
Sabra08G0054200 Salix brachista HOM05D004070 ORTHO05D004904 2.5e-19 101.7 243 30.0
CsaV3_5G010480 Cucumis sativus L. HOM05D004070 ORTHO05D004904 1.6e-18 99.0 205 32.2
arahy.Tifrunner.gnm1.ann1.N2R911 Arachis hypogaea HOM05D004070 ORTHO05D004904 1.2e-16 92.8 69 63.8
BcaB03g16457 Brassica carinata HOM05D004070 ORTHO05D032257 3.4e-16 91.3 59 67.8
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 4.5e-13 80.9 48 70.8
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 4.5e-13 80.9 48 70.8
BcaC06g31359 Brassica carinata HOM05D004070 ORTHO05D000295 5.9e-13 80.5 72 59.7


User provided reference genes

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